Miyakogusa Predicted Gene

Lj3g3v3085860.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3085860.3 Non Chatacterized Hit- tr|K3Y7Q4|K3Y7Q4_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si009962,62.86,7e-19,seg,NULL; PREDICTED PROTEIN (FRAGMENT),NULL;
MEMBRANE ASSOCIATED RING FINGER,NULL,CUFF.45283.3
         (139 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G60580.3 | Symbols:  | RING/U-box superfamily protein | chr5:...   157   2e-39
AT5G60580.1 | Symbols:  | RING/U-box superfamily protein | chr5:...   157   2e-39
AT5G60580.4 | Symbols:  | RING/U-box superfamily protein | chr5:...   147   2e-36
AT5G60580.2 | Symbols:  | RING/U-box superfamily protein | chr5:...   147   2e-36
AT3G09760.1 | Symbols:  | RING/U-box superfamily protein | chr3:...   145   6e-36
AT5G03180.2 | Symbols:  | RING/U-box superfamily protein | chr5:...   124   2e-29
AT5G03180.1 | Symbols:  | RING/U-box superfamily protein | chr5:...   124   2e-29
AT3G06330.1 | Symbols:  | RING/U-box superfamily protein | chr3:...    86   1e-17
AT3G06330.2 | Symbols:  | RING/U-box superfamily protein | chr3:...    85   1e-17
AT5G18760.1 | Symbols:  | RING/U-box superfamily protein | chr5:...    55   2e-08

>AT5G60580.3 | Symbols:  | RING/U-box superfamily protein |
           chr5:24354298-24356706 FORWARD LENGTH=487
          Length = 487

 Score =  157 bits (398), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 85/124 (68%), Positives = 97/124 (78%)

Query: 1   MLAYFCFLEQLLVSKMGTGAIAISLPFSCVLGXXXXXXXXXXVKSRFIWIYASVQFALVV 60
           MLAYFCFLEQLLV  MGTGAIAISLPFSC+LG          V  RF+WIYASVQFALVV
Sbjct: 348 MLAYFCFLEQLLVENMGTGAIAISLPFSCILGLLASMTASTMVMRRFVWIYASVQFALVV 407

Query: 61  LFAHIFYSVVHVQAVLSILLATFAGFGVVMCGSSILVEVFRWRRRWQALSEQQQLHGPQT 120
           LFAHIFYSVV +Q VLS+LL+TFAGFGV +CGSS++VE  RWRRRW+A   +QQL+   T
Sbjct: 408 LFAHIFYSVVKLQPVLSVLLSTFAGFGVCICGSSVMVEFVRWRRRWRARRLEQQLNHALT 467

Query: 121 ANTP 124
            + P
Sbjct: 468 LSQP 471


>AT5G60580.1 | Symbols:  | RING/U-box superfamily protein |
           chr5:24354298-24356706 FORWARD LENGTH=487
          Length = 487

 Score =  157 bits (398), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 85/124 (68%), Positives = 97/124 (78%)

Query: 1   MLAYFCFLEQLLVSKMGTGAIAISLPFSCVLGXXXXXXXXXXVKSRFIWIYASVQFALVV 60
           MLAYFCFLEQLLV  MGTGAIAISLPFSC+LG          V  RF+WIYASVQFALVV
Sbjct: 348 MLAYFCFLEQLLVENMGTGAIAISLPFSCILGLLASMTASTMVMRRFVWIYASVQFALVV 407

Query: 61  LFAHIFYSVVHVQAVLSILLATFAGFGVVMCGSSILVEVFRWRRRWQALSEQQQLHGPQT 120
           LFAHIFYSVV +Q VLS+LL+TFAGFGV +CGSS++VE  RWRRRW+A   +QQL+   T
Sbjct: 408 LFAHIFYSVVKLQPVLSVLLSTFAGFGVCICGSSVMVEFVRWRRRWRARRLEQQLNHALT 467

Query: 121 ANTP 124
            + P
Sbjct: 468 LSQP 471


>AT5G60580.4 | Symbols:  | RING/U-box superfamily protein |
           chr5:24354298-24356706 FORWARD LENGTH=494
          Length = 494

 Score =  147 bits (371), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 85/131 (64%), Positives = 97/131 (74%), Gaps = 7/131 (5%)

Query: 1   MLAYFCFLEQLLVSKMGTGAIAISLPFSCVLGXXXXXXXXX-------XVKSRFIWIYAS 53
           MLAYFCFLEQLLV  MGTGAIAISLPFSC+LG                 V  RF+WIYAS
Sbjct: 348 MLAYFCFLEQLLVENMGTGAIAISLPFSCILGLLASMTASTMVLEYSYAVMRRFVWIYAS 407

Query: 54  VQFALVVLFAHIFYSVVHVQAVLSILLATFAGFGVVMCGSSILVEVFRWRRRWQALSEQQ 113
           VQFALVVLFAHIFYSVV +Q VLS+LL+TFAGFGV +CGSS++VE  RWRRRW+A   +Q
Sbjct: 408 VQFALVVLFAHIFYSVVKLQPVLSVLLSTFAGFGVCICGSSVMVEFVRWRRRWRARRLEQ 467

Query: 114 QLHGPQTANTP 124
           QL+   T + P
Sbjct: 468 QLNHALTLSQP 478


>AT5G60580.2 | Symbols:  | RING/U-box superfamily protein |
           chr5:24354298-24356706 FORWARD LENGTH=494
          Length = 494

 Score =  147 bits (371), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 85/131 (64%), Positives = 97/131 (74%), Gaps = 7/131 (5%)

Query: 1   MLAYFCFLEQLLVSKMGTGAIAISLPFSCVLGXXXXXXXXX-------XVKSRFIWIYAS 53
           MLAYFCFLEQLLV  MGTGAIAISLPFSC+LG                 V  RF+WIYAS
Sbjct: 348 MLAYFCFLEQLLVENMGTGAIAISLPFSCILGLLASMTASTMVLEYSYAVMRRFVWIYAS 407

Query: 54  VQFALVVLFAHIFYSVVHVQAVLSILLATFAGFGVVMCGSSILVEVFRWRRRWQALSEQQ 113
           VQFALVVLFAHIFYSVV +Q VLS+LL+TFAGFGV +CGSS++VE  RWRRRW+A   +Q
Sbjct: 408 VQFALVVLFAHIFYSVVKLQPVLSVLLSTFAGFGVCICGSSVMVEFVRWRRRWRARRLEQ 467

Query: 114 QLHGPQTANTP 124
           QL+   T + P
Sbjct: 468 QLNHALTLSQP 478


>AT3G09760.1 | Symbols:  | RING/U-box superfamily protein |
           chr3:2992975-2995451 REVERSE LENGTH=491
          Length = 491

 Score =  145 bits (367), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 68/135 (50%), Positives = 90/135 (66%), Gaps = 12/135 (8%)

Query: 1   MLAYFCFLEQLLVSKMGTGAIAISLPFSCVLGXXXXXXXXXXVKSRFIWIYASVQFALVV 60
           MLAYFCFLEQLL++KM +GAIA+SLPFSCVLG          V  R++WIYA+ QF LVV
Sbjct: 358 MLAYFCFLEQLLLTKMQSGAIAVSLPFSCVLGLFASMTATTMVPKRYVWIYATTQFGLVV 417

Query: 61  LFAHIFYSVVHVQAVLSILLATFAGFGVVMCGSSILVEVFRWRRRWQALSEQQQLHGPQT 120
            F+HIF+++V +Q V++ILLAT  GFG+ M G++ +VE  +WRR              +T
Sbjct: 418 FFSHIFFTLVRMQPVVAILLATIVGFGLTMSGTTGIVEFSKWRR------------SNRT 465

Query: 121 ANTPRSGSVTQPVVQ 135
           A  P S  V QP+V+
Sbjct: 466 AELPSSSQVDQPLVE 480


>AT5G03180.2 | Symbols:  | RING/U-box superfamily protein |
           chr5:754201-756411 REVERSE LENGTH=466
          Length = 466

 Score =  124 bits (311), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 57/115 (49%), Positives = 75/115 (65%), Gaps = 3/115 (2%)

Query: 1   MLAYFCFLEQLLVSKMGTGAIAISLPFSCVLGXXXXXXXXXXVKSRFIWIYASVQFALVV 60
           MLAYFCFLEQLL+  M + A+AI+LPFSC++G          VK  ++WIYA+VQF  VV
Sbjct: 345 MLAYFCFLEQLLIIDMKSSAVAIALPFSCIIGLLASMISTTMVKKNYVWIYATVQFGFVV 404

Query: 61  LFAHIFYSVVHV---QAVLSILLATFAGFGVVMCGSSILVEVFRWRRRWQALSEQ 112
           LFA +FY VV     Q V+ I+LAT  GFG+ M G++ + E  +WRR    L E+
Sbjct: 405 LFAQLFYRVVRFDVKQPVMCIVLATMIGFGLTMTGTTAINEYLKWRRSNSHLPEE 459


>AT5G03180.1 | Symbols:  | RING/U-box superfamily protein |
           chr5:754201-756411 REVERSE LENGTH=462
          Length = 462

 Score =  124 bits (311), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 57/115 (49%), Positives = 75/115 (65%), Gaps = 3/115 (2%)

Query: 1   MLAYFCFLEQLLVSKMGTGAIAISLPFSCVLGXXXXXXXXXXVKSRFIWIYASVQFALVV 60
           MLAYFCFLEQLL+  M + A+AI+LPFSC++G          VK  ++WIYA+VQF  VV
Sbjct: 341 MLAYFCFLEQLLIIDMKSSAVAIALPFSCIIGLLASMISTTMVKKNYVWIYATVQFGFVV 400

Query: 61  LFAHIFYSVVHV---QAVLSILLATFAGFGVVMCGSSILVEVFRWRRRWQALSEQ 112
           LFA +FY VV     Q V+ I+LAT  GFG+ M G++ + E  +WRR    L E+
Sbjct: 401 LFAQLFYRVVRFDVKQPVMCIVLATMIGFGLTMTGTTAINEYLKWRRSNSHLPEE 455


>AT3G06330.1 | Symbols:  | RING/U-box superfamily protein |
           chr3:1917334-1919709 FORWARD LENGTH=426
          Length = 426

 Score = 85.5 bits (210), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/102 (42%), Positives = 58/102 (56%)

Query: 4   YFCFLEQLLVSKMGTGAIAISLPFSCVLGXXXXXXXXXXVKSRFIWIYASVQFALVVLFA 63
           YF FLEQLL+  +   AI I+ PFS  LG              +IW YA+++FALV +  
Sbjct: 317 YFFFLEQLLIRDLNKQAIYIAAPFSLTLGLLASIFAIVLAIREYIWTYAALEFALVGMLV 376

Query: 64  HIFYSVVHVQAVLSILLATFAGFGVVMCGSSILVEVFRWRRR 105
           HIFY+ V + A  SIL A   GFG+ +C +S+ +  F WR R
Sbjct: 377 HIFYATVRLSATYSILFAGILGFGIAVCLNSLYLHYFAWRVR 418


>AT3G06330.2 | Symbols:  | RING/U-box superfamily protein |
           chr3:1918512-1919709 FORWARD LENGTH=257
          Length = 257

 Score = 85.1 bits (209), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 59/104 (56%)

Query: 2   LAYFCFLEQLLVSKMGTGAIAISLPFSCVLGXXXXXXXXXXVKSRFIWIYASVQFALVVL 61
           + YF FLEQLL+  +   AI I+ PFS  LG              +IW YA+++FALV +
Sbjct: 146 VCYFFFLEQLLIRDLNKQAIYIAAPFSLTLGLLASIFAIVLAIREYIWTYAALEFALVGM 205

Query: 62  FAHIFYSVVHVQAVLSILLATFAGFGVVMCGSSILVEVFRWRRR 105
             HIFY+ V + A  SIL A   GFG+ +C +S+ +  F WR R
Sbjct: 206 LVHIFYATVRLSATYSILFAGILGFGIAVCLNSLYLHYFAWRVR 249


>AT5G18760.1 | Symbols:  | RING/U-box superfamily protein |
           chr5:6258508-6260828 REVERSE LENGTH=411
          Length = 411

 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 49/90 (54%)

Query: 2   LAYFCFLEQLLVSKMGTGAIAISLPFSCVLGXXXXXXXXXXVKSRFIWIYASVQFALVVL 61
           + YF FLE LL+  + + AI ++ PFS  L               +IW YA+++FALV L
Sbjct: 300 VCYFFFLEHLLIRDLNSQAIFVAAPFSFTLALLASTFAVILAIREYIWTYAALEFALVAL 359

Query: 62  FAHIFYSVVHVQAVLSILLATFAGFGVVMC 91
             H+ Y+ + V  + ++L A   GFG+ MC
Sbjct: 360 LVHLLYATLRVPVIYAMLFAGILGFGMAMC 389