Miyakogusa Predicted Gene

Lj3g3v3085850.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3085850.1 Non Chatacterized Hit- tr|A5BSH1|A5BSH1_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,71.43,0.0000007,SUA5,NULL; no description,DHBP synthase RibB-like
alpha/beta domain; YrdC/RibB,DHBP synthase RibB-li,CUFF.45278.1
         (278 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G60590.2 | Symbols:  | DHBP synthase RibB-like alpha/beta dom...   345   2e-95
AT5G60590.1 | Symbols:  | DHBP synthase RibB-like alpha/beta dom...   178   4e-45
AT3G01920.1 | Symbols:  | DHBP synthase RibB-like alpha/beta dom...    64   1e-10

>AT5G60590.2 | Symbols:  | DHBP synthase RibB-like alpha/beta domain
           | chr5:24357066-24358443 FORWARD LENGTH=288
          Length = 288

 Score =  345 bits (886), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 170/243 (69%), Positives = 197/243 (81%)

Query: 24  GVRRLALVPRLPQSQGLRRVLPKNVDWRMDSGDLGLEFKAGVVHPARDDYAAEAVEALKA 83
           GV  L       QS+ LR  L K + W ++  +  +  K+ +VHPA + YA EA+EA+K+
Sbjct: 26  GVSELRCFSIANQSRRLRWGLQKKMVWSLERAETCVVSKSCLVHPATEAYAQEAIEAIKS 85

Query: 84  GKVIAVPTDTLYGFACDACSLEAVNRIYEIKGRKHTSPLAICVGDVSDINRFAVTDHLPH 143
            KVIAVPTDTLYGFACDACSLEAV+RIYEIKGRK TSPLAICVGDV DI R A T HLPH
Sbjct: 86  EKVIAVPTDTLYGFACDACSLEAVSRIYEIKGRKLTSPLAICVGDVLDIKRVATTSHLPH 145

Query: 144 GLLDSLLPGPVTVVLKRGESSILEQSLNPGFDSIGVRVPDSNFIRVIARGSGTALALTSA 203
           GLLDSLLPGPVT+VL+RGESSILE+SLNPG  +IGVRVPD  FIR ++RGSG+ LALTSA
Sbjct: 146 GLLDSLLPGPVTLVLQRGESSILEKSLNPGIGTIGVRVPDCEFIREVSRGSGSVLALTSA 205

Query: 204 NLSGQPSSVCIKDFEKLWEHCAFVFDGGLLPSGRAGSTVVDLTTPHKYKILRPGSAKEET 263
           NLSG  SSVC+KDFE LW+HCA+V+DGGLLPSGRAGST+VDLT   KYKI+RPGSAK+ T
Sbjct: 206 NLSGDRSSVCVKDFENLWQHCAYVYDGGLLPSGRAGSTIVDLTKVGKYKIIRPGSAKQAT 265

Query: 264 VAI 266
           VAI
Sbjct: 266 VAI 268


>AT5G60590.1 | Symbols:  | DHBP synthase RibB-like alpha/beta domain
           | chr5:24357066-24357952 FORWARD LENGTH=164
          Length = 164

 Score =  178 bits (451), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 86/125 (68%), Positives = 101/125 (80%)

Query: 36  QSQGLRRVLPKNVDWRMDSGDLGLEFKAGVVHPARDDYAAEAVEALKAGKVIAVPTDTLY 95
           QS+ LR  L K + W ++  +  +  K+ +VHPA + YA EA+EA+K+ KVIAVPTDTLY
Sbjct: 38  QSRRLRWGLQKKMVWSLERAETCVVSKSCLVHPATEAYAQEAIEAIKSEKVIAVPTDTLY 97

Query: 96  GFACDACSLEAVNRIYEIKGRKHTSPLAICVGDVSDINRFAVTDHLPHGLLDSLLPGPVT 155
           GFACDACSLEAV+RIYEIKGRK TSPLAICVGDV DI R A T HLPHGLLDSLLPGPVT
Sbjct: 98  GFACDACSLEAVSRIYEIKGRKLTSPLAICVGDVLDIKRVATTSHLPHGLLDSLLPGPVT 157

Query: 156 VVLKR 160
           +VL+R
Sbjct: 158 LVLQR 162


>AT3G01920.1 | Symbols:  | DHBP synthase RibB-like alpha/beta domain
           | chr3:317449-319001 FORWARD LENGTH=307
          Length = 307

 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 91/203 (44%), Gaps = 31/203 (15%)

Query: 78  VEALKAGKVIAVPTDTLYGFACDACSLEAVNRIYEIKGRKHTSPLAICVGDVSDINRFAV 137
           ++ LK G V  +PTDT+Y  ACD  +  AV R+  IK  + + PL+I    + DI+ F  
Sbjct: 87  IDLLKQGAVGVIPTDTVYAIACDCKNHSAVERLRRIKKIESSKPLSILCRSLRDIDTF-- 144

Query: 138 TDHLPHG----------LLDSLLPGPVTVVLKRGESSILEQSLNPGFDS--------IGV 179
           T   P G           +   LPGP T +L      + +Q +  G  S        +GV
Sbjct: 145 TMGFPRGDGHGHANVFRAVKQCLPGPYTFILT-ASKELPKQCVGYGTTSVKYASRKNVGV 203

Query: 180 RVPDSNFIRVIARGSGTALALTSANLSGQPSSVCIKDFEKLW-----EHCAFVFDGGLLP 234
           R+ D    + I +     L  TS  + G   +  + D   +      E   FV DGG+  
Sbjct: 204 RISDDALCQAILQQMDAPLICTS--VKGPKENEWMIDPTAIGDIYGPEGLDFVVDGGIRV 261

Query: 235 SGRAGSTVVDLTTPHKYKILRPG 257
           +    ST+VD+T P+  K++R G
Sbjct: 262 A--EPSTIVDMTGPYP-KVIREG 281