Miyakogusa Predicted Gene
- Lj3g3v3085550.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v3085550.1 Non Chatacterized Hit- tr|A5BNI8|A5BNI8_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,38.06,1e-18,dsRNA-binding domain-like,NULL; seg,NULL;
dsrm,Double-stranded RNA-binding; no
description,Double-st,CUFF.45252.1
(401 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G28380.1 | Symbols: DRB2 | dsRNA-binding protein 2 | chr2:121... 456 e-128
AT5G41070.1 | Symbols: DRB5 | dsRNA-binding protein 5 | chr5:164... 273 1e-73
AT3G26932.2 | Symbols: DRB3 | dsRNA-binding protein 3 | chr3:993... 266 2e-71
AT3G26932.1 | Symbols: DRB3 | dsRNA-binding protein 3 | chr3:993... 266 2e-71
AT3G62800.2 | Symbols: DRB4 | double-stranded-RNA-binding protei... 131 7e-31
AT3G62800.1 | Symbols: DRB4 | double-stranded-RNA-binding protei... 131 7e-31
AT3G62800.3 | Symbols: | double-stranded-RNA-binding protein 4 ... 131 1e-30
AT1G09700.1 | Symbols: HYL1, DRB1 | dsRNA-binding domain-like su... 94 1e-19
>AT2G28380.1 | Symbols: DRB2 | dsRNA-binding protein 2 |
chr2:12134098-12135915 REVERSE LENGTH=434
Length = 434
Score = 456 bits (1173), Expect = e-128, Method: Compositional matrix adjust.
Identities = 244/366 (66%), Positives = 275/366 (75%), Gaps = 32/366 (8%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCLREGPDHAPRFKATVNFNGETFETPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCFNLPSYTC+REGPDHAPRFKATVNFNGE FE+P YCSTLRQAEHSA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60
Query: 61 AEVALNSLSHRGPSHSLAAKILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
AEVALN+LS+RGPSHSLAA+ILDETGVYKNLLQEIAQRVGAPLP+YTTFRSGLGH PVFT
Sbjct: 61 AEVALNALSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFT 120
Query: 121 GTVELAGITFTGEPAKSKKQAEKNAAMAAWSTLKQLAKXXXXXXXXPENNDELEQITIAR 180
GTVELAGITFTG+PAK+KKQAEKNAAMAAWS+LKQLAK PEN DELEQ+ IAR
Sbjct: 121 GTVELAGITFTGDPAKNKKQAEKNAAMAAWSSLKQLAKETSSSMPEPENIDELEQVIIAR 180
Query: 181 ALLNFRLKEKM-TMSNPNAPIPFPKKFQFQNPRPTSPQPLPAATSKILPLFSQKTAPRSR 239
AL+N+R+KE + T S+ +AP+PF KKF QN RPTSPQP PA TS+ILP K P
Sbjct: 181 ALINYRIKENIGTGSSSSAPVPFAKKFFMQNLRPTSPQPSPATTSRILPFICPKQ-PSRS 239
Query: 240 HLVTAAASSG------NSATQRYYSTPESRGPCRPNFPAVGAAPYVPIRQMRSPCQGIAP 293
+ AA+SG + R Y P+ R PYVP+RQ RS C G+AP
Sbjct: 240 SRSSLAATSGIDRIMAAALESRSYQRPQQR---------FANPPYVPMRQFRSQCHGMAP 290
Query: 294 PVTIRTAVPVFSPP-------------PATVSHHQVMQ-ASSIRVAPPVNIRQAVPVYA- 338
PVTIRTAVPVFS P P++V +M+ A +R+APPV IR AVPV+A
Sbjct: 291 PVTIRTAVPVFSAPPMPPPPCTNNTQLPSSVYVPSLMRTAPPVRIAPPVTIRTAVPVFAS 350
Query: 339 APPARI 344
APP RI
Sbjct: 351 APPVRI 356
>AT5G41070.1 | Symbols: DRB5 | dsRNA-binding protein 5 |
chr5:16438547-16439916 FORWARD LENGTH=393
Length = 393
Score = 273 bits (699), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 131/189 (69%), Positives = 150/189 (79%), Gaps = 7/189 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCLREGPDHAPRFKATVNFNGETFETPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCFNLPSYTC+REGPDHAPRFKA+VNFNGE FE+P YCSTLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60
Query: 61 AEVALNSLSHRGPSHSLAAKILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
AEV+LN LS R PS SL AKILDETG+YKNLLQE A R G LP YT+ RSG H P F+
Sbjct: 61 AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFS 120
Query: 121 GTVELAGITFTGEPAKSKKQAEKNAAMAAWSTLKQLAKXXXXXXXXPENNDELEQITIAR 180
TVELAG+TFTGE AK+KKQAEKNAA+AAWS+LK+++ ++E EQ +AR
Sbjct: 121 CTVELAGMTFTGESAKTKKQAEKNAAIAAWSSLKKMS-------SLDSQDEEKEQEAVAR 173
Query: 181 ALLNFRLKE 189
L F+ KE
Sbjct: 174 VLSRFKPKE 182
>AT3G26932.2 | Symbols: DRB3 | dsRNA-binding protein 3 |
chr3:9930460-9931714 REVERSE LENGTH=359
Length = 359
Score = 266 bits (679), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 128/189 (67%), Positives = 151/189 (79%), Gaps = 6/189 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCLREGPDHAPRFKATVNFNGETFETPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCF+LPSYTC REGPDHAPRFKA+VNFNGE FE+P YCSTLRQAEHSA
Sbjct: 1 MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60
Query: 61 AEVALNSLSHRGPSHSLAAKILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
AEVAL++LS +GPS SL A++LDETG+YKNLLQE A R G LP YT+ RSG GH+P F+
Sbjct: 61 AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120
Query: 121 GTVELAGITFTGEPAKSKKQAEKNAAMAAWSTLKQLAKXXXXXXXXPENNDELEQITIAR 180
TVELAG++F GE AK+KKQAEKNAA+AAW +L+++ + P +E EQ +AR
Sbjct: 121 CTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRKMPR------LDPLRGEEKEQEIVAR 174
Query: 181 ALLNFRLKE 189
L FR KE
Sbjct: 175 VLSRFRPKE 183
>AT3G26932.1 | Symbols: DRB3 | dsRNA-binding protein 3 |
chr3:9930460-9931714 REVERSE LENGTH=359
Length = 359
Score = 266 bits (679), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 128/189 (67%), Positives = 151/189 (79%), Gaps = 6/189 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCLREGPDHAPRFKATVNFNGETFETPHYCSTLRQAEHSA 60
MYKNQLQELAQRSCF+LPSYTC REGPDHAPRFKA+VNFNGE FE+P YCSTLRQAEHSA
Sbjct: 1 MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60
Query: 61 AEVALNSLSHRGPSHSLAAKILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
AEVAL++LS +GPS SL A++LDETG+YKNLLQE A R G LP YT+ RSG GH+P F+
Sbjct: 61 AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120
Query: 121 GTVELAGITFTGEPAKSKKQAEKNAAMAAWSTLKQLAKXXXXXXXXPENNDELEQITIAR 180
TVELAG++F GE AK+KKQAEKNAA+AAW +L+++ + P +E EQ +AR
Sbjct: 121 CTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRKMPR------LDPLRGEEKEQEIVAR 174
Query: 181 ALLNFRLKE 189
L FR KE
Sbjct: 175 VLSRFRPKE 183
>AT3G62800.2 | Symbols: DRB4 | double-stranded-RNA-binding protein 4
| chr3:23225749-23227163 REVERSE LENGTH=355
Length = 355
Score = 131 bits (330), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 95/155 (61%), Gaps = 8/155 (5%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCLREGPDHAPRFKATVNFNGETFETPHYCSTLRQAEHSA 60
+YK QLQ A + LP Y REGP HAPRF+ V F G+TF++ + TL+ AEH+A
Sbjct: 4 VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63
Query: 61 AEVALNSLSHRGPSHSLAAKILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
A++A+ SL+ + P A YKNLLQEIAQ+ + LP Y T SG H P FT
Sbjct: 64 AKIAVASLTPQSPEGIDVA--------YKNLLQEIAQKESSLLPFYATATSGPSHAPTFT 115
Query: 121 GTVELAGITFTGEPAKSKKQAEKNAAMAAWSTLKQ 155
TVE AG F+GE AK+KK AE +AA A+ ++K
Sbjct: 116 STVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIKN 150
>AT3G62800.1 | Symbols: DRB4 | double-stranded-RNA-binding protein 4
| chr3:23225749-23227163 REVERSE LENGTH=355
Length = 355
Score = 131 bits (330), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 95/155 (61%), Gaps = 8/155 (5%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCLREGPDHAPRFKATVNFNGETFETPHYCSTLRQAEHSA 60
+YK QLQ A + LP Y REGP HAPRF+ V F G+TF++ + TL+ AEH+A
Sbjct: 4 VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63
Query: 61 AEVALNSLSHRGPSHSLAAKILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
A++A+ SL+ + P A YKNLLQEIAQ+ + LP Y T SG H P FT
Sbjct: 64 AKIAVASLTPQSPEGIDVA--------YKNLLQEIAQKESSLLPFYATATSGPSHAPTFT 115
Query: 121 GTVELAGITFTGEPAKSKKQAEKNAAMAAWSTLKQ 155
TVE AG F+GE AK+KK AE +AA A+ ++K
Sbjct: 116 STVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIKN 150
>AT3G62800.3 | Symbols: | double-stranded-RNA-binding protein 4 |
chr3:23225749-23227163 REVERSE LENGTH=329
Length = 329
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/154 (47%), Positives = 95/154 (61%), Gaps = 8/154 (5%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCLREGPDHAPRFKATVNFNGETFETPHYCSTLRQAEHSA 60
+YK QLQ A + LP Y REGP HAPRF+ V F G+TF++ + TL+ AEH+A
Sbjct: 4 VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63
Query: 61 AEVALNSLSHRGPSHSLAAKILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
A++A+ SL+ + P A YKNLLQEIAQ+ + LP Y T SG H P FT
Sbjct: 64 AKIAVASLTPQSPEGIDVA--------YKNLLQEIAQKESSLLPFYATATSGPSHAPTFT 115
Query: 121 GTVELAGITFTGEPAKSKKQAEKNAAMAAWSTLK 154
TVE AG F+GE AK+KK AE +AA A+ ++K
Sbjct: 116 STVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIK 149
>AT1G09700.1 | Symbols: HYL1, DRB1 | dsRNA-binding domain-like
superfamily protein | chr1:3137960-3140118 REVERSE
LENGTH=419
Length = 419
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 84/151 (55%), Gaps = 1/151 (0%)
Query: 1 MYKNQLQELAQRSCFNLPSYTCLREGPDHAPRFKATVNFNGETFETPHYCSTLRQAEHSA 60
++K++LQE AQ+ P Y ++EGP H F++TV +G + + + AE SA
Sbjct: 15 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 74
Query: 61 AEVALNSLSHRGPSHSLAAKILDETGVYKNLLQEIAQRVGAPLPQYTTFR-SGLGHLPVF 119
AEVAL L+ ++ + ETG+ KNLLQE AQ++ +P Y + LG + F
Sbjct: 75 AEVALRELAKSSELSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQF 134
Query: 120 TGTVELAGITFTGEPAKSKKQAEKNAAMAAW 150
T TVE+ GI +TG ++KK AE +A A
Sbjct: 135 TCTVEIGGIKYTGAATRTKKDAEISAGRTAL 165