Miyakogusa Predicted Gene

Lj3g3v3084430.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3084430.1 Non Chatacterized Hit- tr|G3VL28|G3VL28_SARHA
Uncharacterized protein (Fragment) OS=Sarcophilus harr,51.85,1e-17,no
description,Anticodon-binding; GLYCYL-TRNA SYNTHETASE,NULL;
GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE,gene.g50285.t1.1
         (99 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G29880.1 | Symbols:  | glycyl-tRNA synthetase / glycine--tRNA...   134   2e-32

>AT1G29880.1 | Symbols:  | glycyl-tRNA synthetase / glycine--tRNA
           ligase | chr1:10459662-10462781 REVERSE LENGTH=729
          Length = 729

 Score =  134 bits (336), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 66/87 (75%), Positives = 72/87 (82%)

Query: 2   RPSKDGDKQLRVFRFPALVAPIKCTVLPLVQNHKLEEVAKLISNSLTLDGILHKIDITDT 61
           RPSK GD+QL +FRFP LVAPIKCTV PLVQN + EEVAK+IS  L   GI HKIDIT T
Sbjct: 595 RPSKAGDEQLNLFRFPPLVAPIKCTVFPLVQNQQFEEVAKVISKELASVGISHKIDITGT 654

Query: 62  SIGKQYARTDELRVLFAITVDSDSSVT 88
           SIGK+YARTDEL V FAITVDSD+SVT
Sbjct: 655 SIGKRYARTDELGVPFAITVDSDTSVT 681