Miyakogusa Predicted Gene
- Lj3g3v3069020.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v3069020.1 tr|Q9ARC5|Q9ARC5_LOTJA Membrane transporter
OS=Lotus japonicus GN=nrt2 PE=2 SV=1,99.02,0,seg,NULL; no
description,NULL; MFS general substrate transporter,Major facilitator
superfamily domai,CUFF.49570.1
(311 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G08090.1 | Symbols: ATNRT2:1, NRT2, NRT2;1AT, ACH1, LIN1, ATN... 500 e-142
AT5G60770.1 | Symbols: ATNRT2.4, NRT2.4 | nitrate transporter 2.... 495 e-140
AT1G08100.1 | Symbols: ATNRT2.2, ACH2, NRT2;2AT, NRT2.2 | nitrat... 478 e-135
AT5G60780.1 | Symbols: ATNRT2.3, NRT2.3 | nitrate transporter 2.... 423 e-119
AT3G45060.1 | Symbols: ATNRT2.6, NRT2.6 | high affinity nitrate ... 422 e-118
AT1G12940.1 | Symbols: ATNRT2.5, NRT2.5 | nitrate transporter2.5... 315 3e-86
AT5G14570.1 | Symbols: ATNRT2.7, NRT2.7 | high affinity nitrate ... 251 6e-67
AT4G14358.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 49 4e-06
>AT1G08090.1 | Symbols: ATNRT2:1, NRT2, NRT2;1AT, ACH1, LIN1,
ATNRT2.1, NRT2.1, NRT2:1 | nitrate transporter 2:1 |
chr1:2524139-2525920 FORWARD LENGTH=530
Length = 530
Score = 500 bits (1287), Expect = e-142, Method: Compositional matrix adjust.
Identities = 238/306 (77%), Positives = 262/306 (85%)
Query: 1 MVEIEGSPGTSMHGVTGREQTFISSVSSPMVPTDTTAKFDLPVDSQHKAKVFKLFSLANP 60
M + G PG+SMHGVTGREQ+F SV SP+V TD TAKFDLPVD++HKA VFKLFS A P
Sbjct: 1 MGDSTGEPGSSMHGVTGREQSFAFSVQSPIVHTDKTAKFDLPVDTEHKATVFKLFSFAKP 60
Query: 61 HMTTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKSDIGNAGVASVSGSIFSRLTMGV 120
HM TFHLSWISF TCFVSTFAAAPLVPIIR+NLNLTK DIGNAGVASVSGSIFSRL MG
Sbjct: 61 HMRTFHLSWISFSTCFVSTFAAAPLVPIIRENLNLTKQDIGNAGVASVSGSIFSRLVMGA 120
Query: 121 ICDLLGPRYGCAFLIMLSAPTVFCMSFVNDAAGYIVVRFMIGFSLATFVSCQYWMSTMFN 180
+CDLLGPRYGCAFL+MLSAPTVF MSFV+DAAG+I VRFMIGF LATFVSCQYWMSTMFN
Sbjct: 121 VCDLLGPRYGCAFLVMLSAPTVFSMSFVSDAAGFITVRFMIGFCLATFVSCQYWMSTMFN 180
Query: 181 SKIIGLVXXXXXXXXXXXXXXXQLIMPIVYELIRRAGSTGFTAWRIAFFIPGFMHVFMGI 240
S+IIGLV QL+MPIVYE+IRR GST FTAWRIAFF+PG++H+ MGI
Sbjct: 181 SQIIGLVNGTAAGWGNMGGGITQLLMPIVYEIIRRCGSTAFTAWRIAFFVPGWLHIIMGI 240
Query: 241 LVLTLGQDLPDGNLSALQKKGDVAKDKFSKVLWYAITNYRTWIFALLYGYSMGVELTTDN 300
LVL LGQDLPDGN + L+K G+VAKDKF K+LWYA+TNYRTWIF LLYGYSMGVEL+TDN
Sbjct: 241 LVLNLGQDLPDGNRATLEKAGEVAKDKFGKILWYAVTNYRTWIFVLLYGYSMGVELSTDN 300
Query: 301 VIAEYF 306
VIAEYF
Sbjct: 301 VIAEYF 306
>AT5G60770.1 | Symbols: ATNRT2.4, NRT2.4 | nitrate transporter 2.4 |
chr5:24444396-24447026 FORWARD LENGTH=527
Length = 527
Score = 495 bits (1275), Expect = e-140, Method: Compositional matrix adjust.
Identities = 234/306 (76%), Positives = 259/306 (84%)
Query: 1 MVEIEGSPGTSMHGVTGREQTFISSVSSPMVPTDTTAKFDLPVDSQHKAKVFKLFSLANP 60
M + G PG+SMHGVTGREQ++ SV SP VP+D++AKF LPVD++HKAKVFKL S P
Sbjct: 1 MADGFGEPGSSMHGVTGREQSYAFSVESPAVPSDSSAKFSLPVDTEHKAKVFKLLSFEAP 60
Query: 61 HMTTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKSDIGNAGVASVSGSIFSRLTMGV 120
HM TFHL+WISFFTCF+STFAAAPLVPIIRDNLNLT+ D+GNAGVASVSGSIFSRL MG
Sbjct: 61 HMRTFHLAWISFFTCFISTFAAAPLVPIIRDNLNLTRQDVGNAGVASVSGSIFSRLVMGA 120
Query: 121 ICDLLGPRYGCAFLIMLSAPTVFCMSFVNDAAGYIVVRFMIGFSLATFVSCQYWMSTMFN 180
+CDLLGPRYGCAFL+MLSAPTVF MSFV A GYI VRFMIGF LATFVSCQYWMSTMFN
Sbjct: 121 VCDLLGPRYGCAFLVMLSAPTVFSMSFVGGAGGYITVRFMIGFCLATFVSCQYWMSTMFN 180
Query: 181 SKIIGLVXXXXXXXXXXXXXXXQLIMPIVYELIRRAGSTGFTAWRIAFFIPGFMHVFMGI 240
+IIGLV QL+MP+VYE+IRR GST FTAWR+AFF+PG+MH+ MGI
Sbjct: 181 GQIIGLVNGTAAGWGNMGGGVTQLLMPMVYEIIRRLGSTSFTAWRMAFFVPGWMHIIMGI 240
Query: 241 LVLTLGQDLPDGNLSALQKKGDVAKDKFSKVLWYAITNYRTWIFALLYGYSMGVELTTDN 300
LVLTLGQDLPDGN S L+KKG V KDKFSKVLWYAITNYRTW+F LLYGYSMGVELTTDN
Sbjct: 241 LVLTLGQDLPDGNRSTLEKKGAVTKDKFSKVLWYAITNYRTWVFVLLYGYSMGVELTTDN 300
Query: 301 VIAEYF 306
VIAEYF
Sbjct: 301 VIAEYF 306
>AT1G08100.1 | Symbols: ATNRT2.2, ACH2, NRT2;2AT, NRT2.2 | nitrate
transporter 2.2 | chr1:2527268-2529078 REVERSE
LENGTH=522
Length = 522
Score = 478 bits (1229), Expect = e-135, Method: Compositional matrix adjust.
Identities = 227/300 (75%), Positives = 255/300 (85%), Gaps = 1/300 (0%)
Query: 7 SPGTSMHGVTGREQTFISSVSSPMVPTDTTAKFDLPVDSQHKAKVFKLFSLANPHMTTFH 66
PG+SMHGVTGREQ++ SV PT+T K++LPVD++ KA VFKLFS A PHM TFH
Sbjct: 6 EPGSSMHGVTGREQSYAFSVDGSE-PTNTKKKYNLPVDAEDKATVFKLFSFAKPHMRTFH 64
Query: 67 LSWISFFTCFVSTFAAAPLVPIIRDNLNLTKSDIGNAGVASVSGSIFSRLTMGVICDLLG 126
LSWISF TCFVSTFAAAPL+PIIR+NLNLTK DIGNAGVASVSGSIFSRL MG +CDLLG
Sbjct: 65 LSWISFSTCFVSTFAAAPLIPIIRENLNLTKHDIGNAGVASVSGSIFSRLVMGAVCDLLG 124
Query: 127 PRYGCAFLIMLSAPTVFCMSFVNDAAGYIVVRFMIGFSLATFVSCQYWMSTMFNSKIIGL 186
PRYGCAFL+MLSAPTVF MSFV+DAAG+I VRFMIGF LATFVSCQYWMSTMFNS+IIGL
Sbjct: 125 PRYGCAFLVMLSAPTVFSMSFVSDAAGFITVRFMIGFCLATFVSCQYWMSTMFNSQIIGL 184
Query: 187 VXXXXXXXXXXXXXXXQLIMPIVYELIRRAGSTGFTAWRIAFFIPGFMHVFMGILVLTLG 246
V QL+MPIVYE+IRR GST FTAWRIAFF+PG++H+ MGILVLTLG
Sbjct: 185 VNGTAAGWGNMGGGITQLLMPIVYEIIRRCGSTAFTAWRIAFFVPGWLHIIMGILVLTLG 244
Query: 247 QDLPDGNLSALQKKGDVAKDKFSKVLWYAITNYRTWIFALLYGYSMGVELTTDNVIAEYF 306
QDLP GN +A++K G+VAKDKF K+LWYA+TNYRTWIF LLYGYSMGVEL+TDNVIAEYF
Sbjct: 245 QDLPGGNRAAMEKAGEVAKDKFGKILWYAVTNYRTWIFVLLYGYSMGVELSTDNVIAEYF 304
>AT5G60780.1 | Symbols: ATNRT2.3, NRT2.3 | nitrate transporter 2.3 |
chr5:24450839-24452756 FORWARD LENGTH=539
Length = 539
Score = 423 bits (1087), Expect = e-119, Method: Compositional matrix adjust.
Identities = 207/305 (67%), Positives = 237/305 (77%), Gaps = 3/305 (0%)
Query: 5 EGSPGTSMHGVTGREQTFISSV---SSPMVPTDTTAKFDLPVDSQHKAKVFKLFSLANPH 61
EGS GTS+HGVT REQ F SV S + D TAKF LPVDS+H+AKVF S A PH
Sbjct: 9 EGSIGTSLHGVTAREQVFSFSVDASSQTVQSDDPTAKFALPVDSEHRAKVFNPLSFAKPH 68
Query: 62 MTTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKSDIGNAGVASVSGSIFSRLTMGVI 121
M FHL W+SFFTCF+STFAAAPLVPIIRDNL+LTK+DIGNAGVASVSG+IFSRL MG +
Sbjct: 69 MRAFHLGWLSFFTCFISTFAAAPLVPIIRDNLDLTKTDIGNAGVASVSGAIFSRLAMGAV 128
Query: 122 CDLLGPRYGCAFLIMLSAPTVFCMSFVNDAAGYIVVRFMIGFSLATFVSCQYWMSTMFNS 181
CDLLG RYG AF +ML+APTVF MSFV +GY+ VRFMIGF LATFVSCQYW S MFN
Sbjct: 129 CDLLGARYGTAFSLMLTAPTVFSMSFVGGPSGYLGVRFMIGFCLATFVSCQYWTSVMFNG 188
Query: 182 KIIGLVXXXXXXXXXXXXXXXQLIMPIVYELIRRAGSTGFTAWRIAFFIPGFMHVFMGIL 241
KIIGLV QL+MP+V+ +I+ AG+T F AWRIAFF+PGF+ V MGIL
Sbjct: 189 KIIGLVNGCAGGWGDMGGGVTQLLMPMVFHVIKLAGATPFMAWRIAFFVPGFLQVVMGIL 248
Query: 242 VLTLGQDLPDGNLSALQKKGDVAKDKFSKVLWYAITNYRTWIFALLYGYSMGVELTTDNV 301
VL+LGQDLPDGNLS LQK G V+KDKFSKV W+A+ NYRTWI +LYG SMG+ELT +NV
Sbjct: 249 VLSLGQDLPDGNLSTLQKSGQVSKDKFSKVFWFAVKNYRTWILFVLYGSSMGIELTINNV 308
Query: 302 IAEYF 306
I+ YF
Sbjct: 309 ISGYF 313
>AT3G45060.1 | Symbols: ATNRT2.6, NRT2.6 | high affinity nitrate
transporter 2.6 | chr3:16477671-16479386 REVERSE
LENGTH=542
Length = 542
Score = 422 bits (1085), Expect = e-118, Method: Compositional matrix adjust.
Identities = 209/308 (67%), Positives = 237/308 (76%), Gaps = 6/308 (1%)
Query: 5 EGSPGTSMHGVTGREQTFISSV-----SSPMVPT-DTTAKFDLPVDSQHKAKVFKLFSLA 58
+GS GTS+HGVT REQ F SV SS V T D TAKF LPVDS+H+AKVFK S A
Sbjct: 9 DGSIGTSLHGVTAREQVFSFSVQEDVPSSQAVRTNDPTAKFALPVDSEHRAKVFKPLSFA 68
Query: 59 NPHMTTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKSDIGNAGVASVSGSIFSRLTM 118
PHM FHL WISFFTCF+STFAAAPLVP+IRDNL+LTK+DIGNAGVASVSG+IFSRL M
Sbjct: 69 KPHMRAFHLGWISFFTCFISTFAAAPLVPVIRDNLDLTKTDIGNAGVASVSGAIFSRLAM 128
Query: 119 GVICDLLGPRYGCAFLIMLSAPTVFCMSFVNDAAGYIVVRFMIGFSLATFVSCQYWMSTM 178
G +CDLLG RYG AF +ML+AP VF MSFV DA Y+ VRFMIGF LATFVSCQYW S M
Sbjct: 129 GAVCDLLGARYGTAFSLMLTAPAVFSMSFVADAGSYLAVRFMIGFCLATFVSCQYWTSVM 188
Query: 179 FNSKIIGLVXXXXXXXXXXXXXXXQLIMPIVYELIRRAGSTGFTAWRIAFFIPGFMHVFM 238
F KIIGLV QL+MP+V+ +I+ G+T FTAWR AFFIPG + + M
Sbjct: 189 FTGKIIGLVNGCAGGWGDMGGGVTQLLMPMVFHVIKLTGATPFTAWRFAFFIPGILQIVM 248
Query: 239 GILVLTLGQDLPDGNLSALQKKGDVAKDKFSKVLWYAITNYRTWIFALLYGYSMGVELTT 298
GILVLTLGQDLPDGNLS LQK G V+KDKFSKV W+A+ NYRTWI +LYG+SMGVELT
Sbjct: 249 GILVLTLGQDLPDGNLSTLQKSGQVSKDKFSKVFWFAVKNYRTWILFMLYGFSMGVELTI 308
Query: 299 DNVIAEYF 306
+NVI+ YF
Sbjct: 309 NNVISGYF 316
>AT1G12940.1 | Symbols: ATNRT2.5, NRT2.5 | nitrate transporter2.5 |
chr1:4416405-4418337 FORWARD LENGTH=502
Length = 502
Score = 315 bits (807), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 150/269 (55%), Positives = 184/269 (68%)
Query: 38 KFDLPVDSQHKAKVFKLFSLANPHMTTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTK 97
+F LPVD+++KA F+LFS+A PHM FHLSW FF CFVSTFAA PL+P+IR+NLNLT
Sbjct: 20 RFALPVDAENKATTFRLFSVAKPHMRAFHLSWFQFFCCFVSTFAAPPLLPVIRENLNLTA 79
Query: 98 SDIGNAGVASVSGSIFSRLTMGVICDLLGPRYGCAFLIMLSAPTVFCMSFVNDAAGYIVV 157
+DIGNAG+ASVSG++F+R+ MG CDL GPR A L + +AP V+ + + G+I+V
Sbjct: 80 TDIGNAGIASVSGAVFARIVMGTACDLFGPRLASAALTLSTAPAVYFTAGIKSPIGFIMV 139
Query: 158 RFMIGFSLATFVSCQYWMSTMFNSKIIGLVXXXXXXXXXXXXXXXQLIMPIVYELIRRAG 217
RF GFSLATFVS Q+WMS+MF+ ++G QLIMPIV+ LIR G
Sbjct: 140 RFFAGFSLATFVSTQFWMSSMFSGPVVGSANGIAAGWGNLGGGATQLIMPIVFSLIRNMG 199
Query: 218 STGFTAWRIAFFIPGFMHVFMGILVLTLGQDLPDGNLSALQKKGDVAKDKFSKVLWYAIT 277
+T FTAWRIAFFIPG VL GQDLPDG+ A+ K G+ KD KV+ I
Sbjct: 200 ATKFTAWRIAFFIPGLFQTLSAFAVLLFGQDLPDGDYWAMHKSGEREKDDVGKVISNGIK 259
Query: 278 NYRTWIFALLYGYSMGVELTTDNVIAEYF 306
NYR WI AL YGY GVELT DN+IAEYF
Sbjct: 260 NYRGWITALAYGYCFGVELTIDNIIAEYF 288
>AT5G14570.1 | Symbols: ATNRT2.7, NRT2.7 | high affinity nitrate
transporter 2.7 | chr5:4695331-4696890 REVERSE
LENGTH=493
Length = 493
Score = 251 bits (640), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 131/283 (46%), Positives = 172/283 (60%), Gaps = 22/283 (7%)
Query: 41 LPVDSQHKAKVFKLFSLANPHMTTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKSDI 100
+PVDS +A VF+ FSL++PH FHL+W+S F+CF STF+ PLVP+I +LNL+ S +
Sbjct: 18 IPVDSDGRATVFRPFSLSSPHSRAFHLAWLSLFSCFFSTFSIPPLVPVISSDLNLSASTV 77
Query: 101 GNAGVASVSGSIFSRLTMGVICDLLGPRYGCAFLIMLSAPTVFCMSFVNDAAGYIVVRFM 160
AG+AS +GSIFSRL MG +CDL+GPR A L L+AP + S V+ +I+VRF
Sbjct: 78 SAAGIASFAGSIFSRLAMGPLCDLIGPRTSSAILSFLTAPVILSASLVSSPTSFILVRFF 137
Query: 161 IGFSLATFVSCQYWMSTMFNSKIIGLVXXXXXXXXXXXXXXXQLIMPIVY----ELIRRA 216
+GFSLA FV+ QYWMS+MF+ +IGL QL+MP++Y E + RA
Sbjct: 138 VGFSLANFVANQYWMSSMFSGNVIGLANGVSAGWANVGAGISQLLMPLIYSTIAEFLPRA 197
Query: 217 GSTGFTAWRIAFFIPGFMHVFMGILVLTLGQDLPDGNL-SALQKKGDV------------ 263
AWR++F P V +LVL GQD P GN ++ Q K +
Sbjct: 198 -----VAWRVSFVFPAIFQVTTAVLVLLYGQDTPHGNRKNSNQNKLTIPEEEEVLVVEED 252
Query: 264 AKDKFSKVLWYAITNYRTWIFALLYGYSMGVELTTDNVIAEYF 306
+ F ++L + NYR WI ALLYGYS GVELTTDNVIA YF
Sbjct: 253 ERSSFVEILIGGLGNYRAWILALLYGYSYGVELTTDNVIAGYF 295
>AT4G14358.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; BEST
Arabidopsis thaliana protein match is: nitrate
transporter2.5 (TAIR:AT1G12940.1); Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr4:8267496-8267759 FORWARD LENGTH=87
Length = 87
Score = 48.9 bits (115), Expect = 4e-06, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 38 KFDLPVDSQHKAKVFKLFSLANPHMTTFHLSWISFFT 74
+F LPV++++KA +LFS+A PHM FH+SW F +
Sbjct: 20 RFALPVNAENKATPVRLFSVAKPHMRDFHVSWFQFLS 56