Miyakogusa Predicted Gene

Lj3g3v3053420.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3053420.2 Non Chatacterized Hit- tr|C6TGZ1|C6TGZ1_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.56817
PE,93.96,0,coiled-coil,NULL; Snf7,Snf7; CHARGED MULTIVESICULAR BODY
PROTEIN 3,NULL; CHARGED MULTIVESICULAR BODY,CUFF.45199.2
         (150 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G22950.1 | Symbols: VPS24.1 | SNF7 family protein | chr5:7681...   272   5e-74
AT3G45000.1 | Symbols: VPS24.2, VPS24 | SNF7 family protein | ch...   172   1e-43
AT3G45000.2 | Symbols: VPS24.2, VPS24 | SNF7 family protein | ch...   100   5e-22
AT1G03950.1 | Symbols: VPS2.3 | vacuolar protein sorting-associa...    79   1e-15
AT2G06530.1 | Symbols: VPS2.1 | SNF7 family protein | chr2:25887...    75   2e-14
AT5G44560.1 | Symbols: VPS2.2 | SNF7 family protein | chr5:17946...    66   7e-12
AT5G44560.2 | Symbols: VPS2.2 | SNF7 family protein | chr5:17946...    52   2e-07

>AT5G22950.1 | Symbols: VPS24.1 | SNF7 family protein |
           chr5:7681380-7682720 FORWARD LENGTH=229
          Length = 229

 Score =  272 bits (696), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 129/150 (86%), Positives = 146/150 (97%)

Query: 1   MEKVINILKPKPNPQQLLRDWQRKLRQECRNVERQIRDIQREEKSVQKAIREAAKRNDMG 60
           ME+V+NI+KPKP+P+QLLRDWQRKLRQECRN+ERQIRDIQ+EE++VQKAI+EAAKRNDM 
Sbjct: 1   MERVMNIIKPKPDPKQLLRDWQRKLRQECRNIERQIRDIQKEERNVQKAIKEAAKRNDMV 60

Query: 61  SAKALAKELVRSRKTVNRLHENKAQLNSISMHLGESVAIARTVGHLSKSAEVMKLVNDLM 120
           SAKALAKE+V SR+TVNRL+ENKAQ+NSISMHLGESVAIARTVGHLSKSAEVMKLVN+LM
Sbjct: 61  SAKALAKEIVSSRRTVNRLYENKAQMNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLM 120

Query: 121 KAPQMAVTMQEFSKEMTKAGVIEEMVNDAV 150
           KAPQMA TMQEFSKEMTKAGVIEE VN+A+
Sbjct: 121 KAPQMAATMQEFSKEMTKAGVIEEFVNEAI 150


>AT3G45000.1 | Symbols: VPS24.2, VPS24 | SNF7 family protein |
           chr3:16460348-16461407 FORWARD LENGTH=200
          Length = 200

 Score =  172 bits (435), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 83/115 (72%), Positives = 102/115 (88%)

Query: 36  IRDIQREEKSVQKAIREAAKRNDMGSAKALAKELVRSRKTVNRLHENKAQLNSISMHLGE 95
           + DI+REE++V KAI+++ KRND+ +AKALA+E+V SR+TV RL+ENKAQ+NSISMHLGE
Sbjct: 7   LSDIEREERNVHKAIKDSVKRNDLVTAKALAREIVSSRRTVKRLYENKAQVNSISMHLGE 66

Query: 96  SVAIARTVGHLSKSAEVMKLVNDLMKAPQMAVTMQEFSKEMTKAGVIEEMVNDAV 150
           S+A A TVG+LSKS EVMKLVN LMKAP++AVTMQ FSKEMTK GVIEE V+DAV
Sbjct: 67  SIATAVTVGNLSKSGEVMKLVNSLMKAPEIAVTMQAFSKEMTKTGVIEEFVSDAV 121


>AT3G45000.2 | Symbols: VPS24.2, VPS24 | SNF7 family protein |
           chr3:16460707-16461407 FORWARD LENGTH=139
          Length = 139

 Score =  100 bits (248), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 48/60 (80%), Positives = 53/60 (88%)

Query: 91  MHLGESVAIARTVGHLSKSAEVMKLVNDLMKAPQMAVTMQEFSKEMTKAGVIEEMVNDAV 150
           MHLGES+A A TVG+LSKS EVMKLVN LMKAP++AVTMQ FSKEMTK GVIEE V+DAV
Sbjct: 1   MHLGESIATAVTVGNLSKSGEVMKLVNSLMKAPEIAVTMQAFSKEMTKTGVIEEFVSDAV 60


>AT1G03950.1 | Symbols: VPS2.3 | vacuolar protein sorting-associated
           protein 2.3 | chr1:1011388-1013212 REVERSE LENGTH=210
          Length = 210

 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 82/146 (56%)

Query: 5   INILKPKPNPQQLLRDWQRKLRQECRNVERQIRDIQREEKSVQKAIREAAKRNDMGSAKA 64
           +NI   KPNP+++LR+ +R++ Q  R +E++I  +Q EEK +   I+  AK  + G+ K 
Sbjct: 1   MNIFTKKPNPREVLRESKREMTQATRGIEKEIGSLQSEEKKLVLEIKRTAKSGNEGATKI 60

Query: 65  LAKELVRSRKTVNRLHENKAQLNSISMHLGESVAIARTVGHLSKSAEVMKLVNDLMKAPQ 124
           LA++L+R R+ +  L  ++AQ+  I+ H     A       +  + + M  ++  M   +
Sbjct: 61  LARQLIRLRQQIANLQGSRAQMRGIATHTQAMHAHTSVAAGMQGATKAMAAMSKNMDPAK 120

Query: 125 MAVTMQEFSKEMTKAGVIEEMVNDAV 150
            A  M+EF K+  +  +  EM++D++
Sbjct: 121 QAKVMREFQKQSAQMDMTTEMMSDSI 146


>AT2G06530.1 | Symbols: VPS2.1 | SNF7 family protein |
           chr2:2588740-2590285 REVERSE LENGTH=225
          Length = 225

 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 85/146 (58%), Gaps = 2/146 (1%)

Query: 6   NILKPKPNPQQLLRDWQRKLRQECRNVERQIRDIQREEKSVQKAIREAAKRNDMGSAKAL 65
           +I   +  P +LLR+ +R L +  R +ER+ + +Q +EK +   I++ AK+  MG+ K +
Sbjct: 4   SIFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLINEIKKTAKQGQMGAVKVM 63

Query: 66  AKELVRSRKTVNRLHENKAQLNSISMHLGESVAIARTVGHLSKS-AEVMKLVNDLMKAPQ 124
           AK+L+R+R  + + ++ K+QL  +S+ + +++   + +G   K   + M  +N  M  P 
Sbjct: 64  AKDLIRTRHQIEKFYKLKSQLQGVSLRI-QTLKSTQAMGEAMKGVTKAMGQMNRQMNLPS 122

Query: 125 MAVTMQEFSKEMTKAGVIEEMVNDAV 150
           +   MQEF ++  K  ++ E++ DA+
Sbjct: 123 LQKIMQEFERQNEKMEMVSEVMGDAI 148


>AT5G44560.1 | Symbols: VPS2.2 | SNF7 family protein |
           chr5:17946081-17948222 FORWARD LENGTH=222
          Length = 222

 Score = 66.2 bits (160), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 77/146 (52%)

Query: 5   INILKPKPNPQQLLRDWQRKLRQECRNVERQIRDIQREEKSVQKAIREAAKRNDMGSAKA 64
           +NI K K  P+  LR  +R++    R +ER+I  +Q EEK +   I++ AK  +  + K 
Sbjct: 1   MNIFKKKTTPKDALRTSKREMAVATRGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKI 60

Query: 65  LAKELVRSRKTVNRLHENKAQLNSISMHLGESVAIARTVGHLSKSAEVMKLVNDLMKAPQ 124
           LA++LVR R+ +  L  ++AQ+  ++ H     A       +  + + M  +N  M   +
Sbjct: 61  LARQLVRLRQQITNLQGSRAQIRGVTTHTQALYASTSISSGMKGATKAMVAMNKQMAPTK 120

Query: 125 MAVTMQEFSKEMTKAGVIEEMVNDAV 150
            A  +++F K+  +  +  EM+++A+
Sbjct: 121 QAKVIKDFQKQSAQLDMTIEMMSEAI 146


>AT5G44560.2 | Symbols: VPS2.2 | SNF7 family protein |
           chr5:17946516-17948222 FORWARD LENGTH=202
          Length = 202

 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 64/122 (52%)

Query: 29  CRNVERQIRDIQREEKSVQKAIREAAKRNDMGSAKALAKELVRSRKTVNRLHENKAQLNS 88
            R +ER+I  +Q EEK +   I++ AK  +  + K LA++LVR R+ +  L  ++AQ+  
Sbjct: 5   TRGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKILARQLVRLRQQITNLQGSRAQIRG 64

Query: 89  ISMHLGESVAIARTVGHLSKSAEVMKLVNDLMKAPQMAVTMQEFSKEMTKAGVIEEMVND 148
           ++ H     A       +  + + M  +N  M   + A  +++F K+  +  +  EM+++
Sbjct: 65  VTTHTQALYASTSISSGMKGATKAMVAMNKQMAPTKQAKVIKDFQKQSAQLDMTIEMMSE 124

Query: 149 AV 150
           A+
Sbjct: 125 AI 126