Miyakogusa Predicted Gene

Lj3g3v3043330.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3043330.2 CUFF.45186.2
         (494 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G28130.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   381   e-106

>AT2G28130.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 25 plant
           structures; EXPRESSED DURING: 13 growth stages; Has
           35333 Blast hits to 34131 proteins in 2444 species:
           Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi -
           991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610
           (source: NCBI BLink). | chr2:11988823-11991397 FORWARD
           LENGTH=458
          Length = 458

 Score =  381 bits (979), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 204/452 (45%), Positives = 282/452 (62%), Gaps = 7/452 (1%)

Query: 43  MNMDDPLDFEVEDELLKPLPINKKRKKAIGLDDLLQDHYNEQDKLLEXXXXXXXXXXXXX 102
           M++D PLDFE ED L+ P  I +KRKK IGLDDLL D Y E+ K+++             
Sbjct: 1   MDLDGPLDFENEDPLVNPPTIIEKRKKVIGLDDLLSDFYKEKSKVIDKVNKKRKVSKVY- 59

Query: 103 XXSSYDDEDRQEALVTRLVEKCHNQLQAFGDEPEIPVWGVTVFGEKKAFPPLDFPDLGSC 162
              S DDE  Q   +++ V +C NQ+    DE E   WG+++FG++K   P    DL SC
Sbjct: 60  --HSDDDEQGQVDKLSQCVVECQNQMNEIADEEENQEWGLSMFGDQKTPIPSLLVDLDSC 117

Query: 163 NIFQSFLNNKLNSVVELAADKGDIFFEGLLVNGWLSRLAFLCGHIEKPVAIWAFNTMLYS 222
            + + F+NN+LN VV L  D+G  F EGLLVNGWL+RL   CG +EK +  W  N +LYS
Sbjct: 118 CLLKEFMNNQLNLVVGLTVDEGTTFIEGLLVNGWLTRLIMTCGRVEKFICKWTLNILLYS 177

Query: 223 SKVELLNSSCDFWCAILSSGKEVDQFPVKIDWFPQFTDLRRALDIYGFLFKFSSSAEDII 282
           SK +L +S+CDFWC+IL S  +V+   V+I W P + +L+ AL+ YGF    S S +D+ 
Sbjct: 178 SKEDLRSSACDFWCSILLSQNKVNGASVEIYWLPNYQELKEALESYGFRISLSHS-QDVE 236

Query: 283 L---DSEMGGPPQNIRAWIRFVTACCLIRTKRAIFSTXXXXXXXXXXXCLLLDRQFQGLL 339
           L   DSE  GPPQNIRAW+  VT CC  R K+ IF+T            LLLDR   GL 
Sbjct: 237 LAEADSECQGPPQNIRAWLTLVTTCCQFRCKKPIFTTSQVEQIAEILVSLLLDRSLLGLS 296

Query: 340 VLLNDCMQAIVNYFTDQEWHSSCENIAKFIACRVSKDLNCIQAVECISEASSRCKQLRCA 399
           +LL +C+ +++  F ++EW SSC+ IA  +A RV +D+NC++ VE +S   +R K LR +
Sbjct: 297 ILLQECLISVIGSFKEEEWISSCKKIANSLASRVPQDINCLRVVESVSGVDARSKHLRSS 356

Query: 400 VAYQSLLSCFDEANCGEEVLESLTMINFKAKSCDFFKMYIHLVLTENWVLSTSLVGDNPV 459
           +A+Q L+   D  +  E +L SL  IN K +SC+ FKMYI LVL ENW+ S++LV   PV
Sbjct: 357 IAHQMLVVLLDHKDSDENLLSSLMSINVKERSCNLFKMYIFLVLAENWLFSSTLVEAKPV 416

Query: 460 IDERFCQFLKHCSSLISATDLRSYAAKVNARA 491
           + + +  FL++CS  I++TDLRSYA+KV  RA
Sbjct: 417 LRDMWAVFLRNCSCQINSTDLRSYASKVRTRA 448