Miyakogusa Predicted Gene

Lj3g3v3043320.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3043320.1 Non Chatacterized Hit- tr|Q94LR7|Q94LR7_ORYSJ
Putative uncharacterized protein OSJNBb0011A08.17
OS=O,32.71,3e-18,seg,NULL; Shugoshin_C,Shugoshin, C-terminal;
coiled-coil,NULL,CUFF.45185.1
         (288 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G04320.2 | Symbols:  | Shugoshin C terminus | chr5:1209613-12...    82   6e-16
AT5G04320.1 | Symbols:  | Shugoshin C terminus | chr5:1209929-12...    79   3e-15
AT3G10440.1 | Symbols:  | Shugoshin C terminus | chr3:3245376-32...    65   5e-11

>AT5G04320.2 | Symbols:  | Shugoshin C terminus |
           chr5:1209613-1212376 FORWARD LENGTH=470
          Length = 470

 Score = 81.6 bits (200), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 41/79 (51%), Positives = 58/79 (73%)

Query: 45  QLLKEREALIQLLAERNKVMETNGAEVKKLRADIKKLQLQNWSLAQSNSHMLAELNLGRE 104
           +L KE   L++ LA RNK++E +G E++KLR +++ +Q +N  LAQ+NS MLAELN  R+
Sbjct: 46  KLQKENMTLMKALAHRNKLVELSGIEIQKLRINLRSVQEKNLQLAQANSQMLAELNTNRD 105

Query: 105 RIKTLQHELLWRAALLKGK 123
           R+K LQHEL  + ALLK K
Sbjct: 106 RLKDLQHELGCKNALLKVK 124


>AT5G04320.1 | Symbols:  | Shugoshin C terminus |
           chr5:1209929-1212376 FORWARD LENGTH=419
          Length = 419

 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/72 (52%), Positives = 54/72 (75%)

Query: 52  ALIQLLAERNKVMETNGAEVKKLRADIKKLQLQNWSLAQSNSHMLAELNLGRERIKTLQH 111
            L++ LA RNK++E +G E++KLR +++ +Q +N  LAQ+NS MLAELN  R+R+K LQH
Sbjct: 2   TLMKALAHRNKLVELSGIEIQKLRINLRSVQEKNLQLAQANSQMLAELNTNRDRLKDLQH 61

Query: 112 ELLWRAALLKGK 123
           EL  + ALLK K
Sbjct: 62  ELGCKNALLKVK 73


>AT3G10440.1 | Symbols:  | Shugoshin C terminus |
           chr3:3245376-3248987 FORWARD LENGTH=572
          Length = 572

 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 79/145 (54%), Gaps = 17/145 (11%)

Query: 9   IGSLMRKKLSDITNSDHHHHLPPLDSFPSDQDCTI------QQLLKEREALIQLLAERNK 62
           + S  R+KL DITN  +  +L    +    Q   I      + L KE   L++++ ER+ 
Sbjct: 33  MNSAQRRKLGDITNLQNQKNLMNQGAKHQQQAILISSKENAENLQKENTKLMKVVMERDG 92

Query: 63  VMETNGAEVKKLRADIKKLQLQNWSLAQSNSHMLAELNLGRERIKTLQHEL-------LW 115
           +     +++KKLR + +K+Q QN  LAQ+N+ +LAE N  ++++K LQHEL       + 
Sbjct: 93  IK----SDLKKLRIEFQKVQEQNLLLAQANTRILAEFNTSKDQLKVLQHELGCKNGLVMA 148

Query: 116 RAALLKGKTMEDVQEKVEIDAQKSA 140
           R  LLK +T+   +   ++ AQ +A
Sbjct: 149 RKMLLKEQTLPCTRHASKVKAQANA 173