Miyakogusa Predicted Gene

Lj3g3v3033290.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3033290.1 tr|Q2PEZ1|Q2PEZ1_TRIPR DNA ligase (Fragment)
OS=Trifolium pratense PE=2 SV=1,82.68,0,coiled-coil,NULL;
DNA_LIGASE_A3,DNA ligase, ATP-dependent, central; DNA_ligase_A_M,DNA
ligase, ATP-d,CUFF.45181.1
         (776 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G08130.1 | Symbols: ATLIG1, LIG1 | DNA ligase 1 | chr1:254291...   990   0.0  
AT1G49250.1 | Symbols:  | ATP-dependent DNA ligase | chr1:182205...   797   0.0  
AT1G66730.1 | Symbols: AtLIG6, LIG6 | DNA LIGASE 6 | chr1:248849...   481   e-135
AT5G57160.1 | Symbols: ATLIG4, LIG4 | DNA ligase IV | chr5:23155...   113   6e-25

>AT1G08130.1 | Symbols: ATLIG1, LIG1 | DNA ligase 1 |
           chr1:2542913-2547815 REVERSE LENGTH=790
          Length = 790

 Score =  990 bits (2560), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/633 (73%), Positives = 542/633 (85%)

Query: 132 ELKELAPRLKKKPSEFDPSTVVCWEKGKPVPFLFLCLAFDMIDKESGRIVITDIACNLLR 191
           E+K     LKKKP++FDP  + CWEKG+ VPFLF+ LAFD+I  ESGRIVITDI CN+LR
Sbjct: 146 EMKSKIGLLKKKPNDFDPEKMSCWEKGERVPFLFVALAFDLISNESGRIVITDILCNMLR 205

Query: 192 TVIHATPEDLVPVVYFLANRIAPAHEGLELGIGDASIIKALAESCGRTESQIRKLNKDRG 251
           TVI  TPEDLV  VY  AN IAPAHEG+ELGIG+++IIKA++E+ GRTE  ++K N + G
Sbjct: 206 TVIATTPEDLVATVYLSANEIAPAHEGVELGIGESTIIKAISEAFGRTEDHVKKQNTELG 265

Query: 252 DLGLVAKECRSSQSMMRKPDALTIRKVFTIFRLIAKESGKDSQEKKKNHIKSLLVAATDC 311
           DLGLVAK  RS+Q+MM KP+ LT+ KVF  FR IAKESGKDS EKKKN +K+LLVA TDC
Sbjct: 266 DLGLVAKGSRSTQTMMFKPEPLTVVKVFDTFRQIAKESGKDSNEKKKNRMKALLVATTDC 325

Query: 312 EPIYLIRLLQTKLRIGLAEQTLLASLGQAAVYTEEHSKPPPEIQSPLEEAAKIVKQVYSV 371
           EP+YL RLLQ KLR+G + QT+LA+LGQAAVY EEHSKPPP  +SPLEEAAKIVKQV++V
Sbjct: 326 EPLYLTRLLQAKLRLGFSGQTVLAALGQAAVYNEEHSKPPPNTKSPLEEAAKIVKQVFTV 385

Query: 372 LPDYDKVLSSLLKDGVWKLPKTCKFTLGVPVGPMLSKPTKGVSEILNKFQDVEFTCEYKY 431
           LP YD ++ +LL  GVW LPKTC FTLGVP+GPML+KPTKGV+EILNKFQD+ FTCEYKY
Sbjct: 386 LPVYDIIVPALLSGGVWNLPKTCNFTLGVPIGPMLAKPTKGVAEILNKFQDIVFTCEYKY 445

Query: 432 DGERAQIHYMENGSVEVYSRNAEWNTGKFPDVVAAVSRLKKTSVSSFVLDCEVVAYDRAK 491
           DGERAQIH+ME+G+ E+YSRNAE NTGK+PDV  A+SRLKK SV SF+LDCEVVA+DR K
Sbjct: 446 DGERAQIHFMEDGTFEIYSRNAERNTGKYPDVALALSRLKKPSVKSFILDCEVVAFDREK 505

Query: 492 QRILPFQVLSTRARKNVAVSDIKVDVCIFAFDLLYLNGQILLQENLKTRREHLYASFEEE 551
           ++ILPFQ+LSTRARKNV V+DIKV VCIFAFD+LYLNGQ L+QENLK RRE LY SFEE+
Sbjct: 506 KKILPFQILSTRARKNVNVNDIKVGVCIFAFDMLYLNGQQLIQENLKIRREKLYESFEED 565

Query: 552 SGYFQFATAITSNDVEEIQKFLDKAIGASSEGLIIKTLNEDATYEPSKRSLNWLKLKKDY 611
            GYFQFATA+TSND++EIQKFLD ++    EGLIIKTL+ DATYEP+KRS NWLKLKKDY
Sbjct: 566 PGYFQFATAVTSNDIDEIQKFLDASVDVGCEGLIIKTLDSDATYEPAKRSNNWLKLKKDY 625

Query: 612 MDNIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNSNEEFQSICKIGTGFSEDVLIERS 671
           MD+IGDS+DLVPIAAFHGRGKRTGVYGAFLLACYD   EEFQSICKIGTGFS+ +L ERS
Sbjct: 626 MDSIGDSVDLVPIAAFHGRGKRTGVYGAFLLACYDVDKEEFQSICKIGTGFSDAMLDERS 685

Query: 672 KGLQTKVIPKPKAYYRYAETINPDVWFEASEVWEVKAADLTISPVYRAAVGIVDSNKGIS 731
             L+++VI  PK YYR  +++NPDVWFE +EVWEVKAADLTISPV+RAA GIVD +KGIS
Sbjct: 686 SSLRSQVIATPKQYYRVGDSLNPDVWFEPTEVWEVKAADLTISPVHRAATGIVDPDKGIS 745

Query: 732 LRFPRLLRVRPDKDPEQATSSEQVAEMYNAQKH 764
           LRFPRLLRVR DK PE+ATSSEQ+A++Y AQKH
Sbjct: 746 LRFPRLLRVREDKKPEEATSSEQIADLYQAQKH 778


>AT1G49250.1 | Symbols:  | ATP-dependent DNA ligase |
           chr1:18220533-18224256 FORWARD LENGTH=657
          Length = 657

 Score =  797 bits (2059), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/590 (66%), Positives = 474/590 (80%), Gaps = 3/590 (0%)

Query: 176 ESGRIVITDIACNLLRTVIHATPEDLVPVVYFLANRIAPAHEGLELGIGDAS-IIKALAE 234
           ESGRIVIT I CN+LRTVI  TP+DL+P VY  AN IAPAHEG++LG+G  S IIKA++E
Sbjct: 58  ESGRIVITHILCNMLRTVIATTPDDLLPTVYLAANEIAPAHEGIKLGMGKGSYIIKAISE 117

Query: 235 SCGRTESQIRKLNKDRGDLGLVAKECRSSQSMMRKPDALTIRKVFTIFRLIAKESGKDSQ 294
           + GRTES + +     GDLGLVA   RSSQ+M+  P  LT+ KV    RLIAKESGK S+
Sbjct: 118 AFGRTESHVEQQYTQLGDLGLVANGSRSSQTMIFMPKPLTVVKVADTLRLIAKESGKGSK 177

Query: 295 EKKKNHIKSLLVAATDCEPIYLIRLLQTKLRIGLAEQTLLASLGQAAVYTEEHSKPPPEI 354
           +KKK+ +K+LLVA TDCEP+YL RLLQ  LR+G + QT+LA+LGQAAVY EEHSKPPP I
Sbjct: 178 DKKKDLMKALLVATTDCEPLYLTRLLQDNLRLGFSRQTVLAALGQAAVYNEEHSKPPPNI 237

Query: 355 QSPLEEAAKIVKQVYSVLPDYDKVLSSLLKDGVWKLPKTCKFTLGVPVGPMLSKPTKGVS 414
           ++PL+EAA IVK+V+S+LP YD ++ +LL  GVW LPKTC  TLGVPV PML+K T  V 
Sbjct: 238 KNPLDEAATIVKEVFSMLPVYDIIVGALLTSGVWNLPKTCNLTLGVPVRPMLAKATTRVD 297

Query: 415 EILNKFQDVEFTCEYKYDGERAQIHYMENGSVEVYSRNAEWNTGKFPDVVAAVSRLKKTS 474
            IL KF+D  FT EYKYDGERAQI+YME+G+VE++SR+AE NTGK+PDV   +SRLKK +
Sbjct: 298 LILEKFKDTVFTAEYKYDGERAQIYYMEDGTVEIFSRHAERNTGKYPDVALVLSRLKKPT 357

Query: 475 VSSFVLDCEVVAYDRAKQRILPFQVLSTRARKNVAVSDIKVDVCIFAFDLLYLNGQILLQ 534
           V SF+LDCEVV ++R K++ILP Q  STRA KNV VSDIKV VC+FAFD+LYLNGQ+L+ 
Sbjct: 358 VKSFILDCEVVTFNREKEKILPLQ--STRAHKNVNVSDIKVGVCVFAFDILYLNGQLLIH 415

Query: 535 ENLKTRREHLYASFEEESGYFQFATAITSNDVEEIQKFLDKAIGASSEGLIIKTLNEDAT 594
           ENL  RRE L+ SFEE+ GYFQFATA+TSND+ E+Q+FL  +I    EGL+IK+L  +AT
Sbjct: 416 ENLNIRREKLHDSFEEDLGYFQFATALTSNDIGELQEFLKASIDIGCEGLMIKSLYSNAT 475

Query: 595 YEPSKRSLNWLKLKKDYMDNIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNSNEEFQS 654
           YEP+KRS NWLKLKKDYMDNIGDS+DLVPIA FHGRGKRTG +GA+LLACYD   EEFQS
Sbjct: 476 YEPAKRSNNWLKLKKDYMDNIGDSVDLVPIATFHGRGKRTGFFGAYLLACYDVDKEEFQS 535

Query: 655 ICKIGTGFSEDVLIERSKGLQTKVIPKPKAYYRYAETINPDVWFEASEVWEVKAADLTIS 714
           ICKIGT FS+  L + S  L +KVI  PK YY+    +NPDVW E +EVWEVKAADLT+S
Sbjct: 536 ICKIGTEFSDVELQDLSSSLCSKVIATPKQYYQVDNDLNPDVWLEPTEVWEVKAADLTVS 595

Query: 715 PVYRAAVGIVDSNKGISLRFPRLLRVRPDKDPEQATSSEQVAEMYNAQKH 764
           PVYR A+GIVD +KGISLRFPRL+R+R DK+PE+AT+S+Q+AEMY AQKH
Sbjct: 596 PVYREAIGIVDPDKGISLRFPRLVRIRKDKNPEEATTSDQIAEMYQAQKH 645


>AT1G66730.1 | Symbols: AtLIG6, LIG6 | DNA LIGASE 6 |
            chr1:24884991-24891823 FORWARD LENGTH=1396
          Length = 1396

 Score =  481 bits (1237), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 253/641 (39%), Positives = 393/641 (61%), Gaps = 24/641 (3%)

Query: 144  PSEFDPSTVVCWEKGKPVPFLFLCLAFDMIDKESGRIVITDIACNLLRTVIHATPEDLVP 203
            P ++ P    CW +G+P P++ L   F  ++ E G+I    + CN+ R++   +PED++P
Sbjct: 748  PEKYQPKEHACWREGQPAPYIHLVRTFASVESEKGKIKAMSMLCNMFRSLFALSPEDVLP 807

Query: 204  VVYFLANRIAPAHEGLELGIGDASIIKALAESCGRTESQIRKLNKDRGDLGLVAKECRSS 263
             VY   N+IA  HE +EL IG + I  AL E+CG + S +R +    GDLG VA+ CR +
Sbjct: 808  AVYLCTNKIAADHENIELNIGGSLISSALEEACGISRSTVRDMYNSLGDLGDVAQLCRQT 867

Query: 264  QSMMRKPDALTIRKVFTIFRLIAKESGKDSQEKKKNHIKSLLVAATDCEPIYLIRLLQTK 323
            Q ++  P  L +R VF+  R I+ ++G  S   KKN I  L+ +  + E  +L+R L   
Sbjct: 868  QKLLVPPPPLLVRDVFSTLRKISVQTGTGSTRLKKNLIVKLMRSCREKEIKFLVRTLARN 927

Query: 324  LRIGLAEQTLLASLGQAAV---YTEEHSKPPPE--IQSPLEEAAKIVKQVYSVLPDYDKV 378
            LRIG   +T+L +LG+A V   +  +H+K   E   +  LE  +  V + Y++LP  D V
Sbjct: 928  LRIGAMLRTVLPALGRAIVMNSFWNDHNKELSESCFREKLEGVSAAVVEAYNILPSLDVV 987

Query: 379  LSSLLKDGVWKLPKTCKFTLGVPVGPMLSKPTKGVSEILNKFQDVEFTCEYKYDGERAQI 438
            + SL+   +     T     G+P+ PML+K  KGV E  N  Q+  FTCEYKYDG+RAQI
Sbjct: 988  VPSLMDKDIEFSTSTLSMVPGIPIKPMLAKIAKGVQEFFNLSQEKAFTCEYKYDGQRAQI 1047

Query: 439  HYMENGSVEVYSRNAEWNTGKFPDVVAAVSRLKKTSVSSFVLDCEVVAYDRAK-QRILPF 497
            H + +G+V ++SRN +  T +FPD+V  + +    +  +F+LD EVVA DR    +++ F
Sbjct: 1048 HKLLDGTVCIFSRNGDETTSRFPDLVDVIKQFSCPAAETFMLDAEVVATDRINGNKLMSF 1107

Query: 498  QVLSTRARKN----VAVSDIKVDVCIFAFDLLYLNGQILLQENLKTRREHLYASF-EEES 552
            Q LSTR R +    +    IKV+VC+F FD++++NG+ LL   L+ RR  L   F E   
Sbjct: 1108 QELSTRERGSKDALITTESIKVEVCVFVFDIMFVNGEQLLALPLRERRRRLKEVFPETRP 1167

Query: 553  GYFQFATAIT----------SNDVEEIQKFLDKAIGASSEGLIIKTLNEDATYEPSKRSL 602
            GY ++A  IT           + +  I  FL++A  +S EG+++K+L+ +A Y P+KRS 
Sbjct: 1168 GYLEYAKEITVGAEEASLNNHDTLSRINAFLEEAFQSSCEGIMVKSLDVNAGYCPTKRSD 1227

Query: 603  NWLKLKKDYMDNIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNSNEEFQSICKIGTGF 662
            +WLK+K+DY+D +GD+LDLVPI A++G G++ G Y  FL+AC++   EEFQS+C++ +GF
Sbjct: 1228 SWLKVKRDYVDGLGDTLDLVPIGAWYGNGRKAGWYSPFLMACFNPETEEFQSVCRVMSGF 1287

Query: 663  SEDVLIERSKGL-QTKVIPKPKAYYRYAETINPDVWFEASEVWEVKAADLTISPVYRAAV 721
            S+   IE  +   + K++ K   YYR  ET  PD+WF A  VWE++ AD T+SPV+ A++
Sbjct: 1288 SDAFYIEMKEFYSEDKILAKKPPYYRTGET--PDMWFSAEVVWEIRGADFTVSPVHSASL 1345

Query: 722  GIVDSNKGISLRFPRLLRVRPDKDPEQATSSEQVAEMYNAQ 762
            G+V  ++GIS+RFPR +    D++PE+ +++  +AEM++AQ
Sbjct: 1346 GLVHPSRGISVRFPRFISKVTDRNPEECSTATDIAEMFHAQ 1386


>AT5G57160.1 | Symbols: ATLIG4, LIG4 | DNA ligase IV |
           chr5:23155150-23161688 REVERSE LENGTH=1219
          Length = 1219

 Score =  113 bits (282), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 140/567 (24%), Positives = 250/567 (44%), Gaps = 112/567 (19%)

Query: 245 KLNKDRGDLGLVAKECRSSQSMMRKPDALTIRKVFTIFRLIAKESGKDSQEKKKNHIKSL 304
           K   + G+  L+A E    +  M     LTI+++  +   +A    +     +K  + S 
Sbjct: 98  KAGANAGNFSLIAAEVLQRRQGM-ASGGLTIKELNDLLDRLASSENR----AEKTLVLST 152

Query: 305 LVAATDCEPI-YLIRLLQTKLRIGLAEQTLLASLGQAAVYTEEHSKPPPEIQSPLEEAAK 363
           L+  T+ + + ++IR++   L++G++E++         ++ E H  P  E          
Sbjct: 153 LIQKTNAQEMKWVIRIILKDLKLGMSEKS---------IFQEFH--PDAE---------- 191

Query: 364 IVKQVYSVLPDYDKVLSSLLKDGVWKLPKTCKFTLGVPVGPMLSKPTKGVSEILNKFQDV 423
               +++V  D  K++   L+D   +  K     +G  V P L+     V+    K    
Sbjct: 192 ---DLFNVTCDL-KLVCEKLRDRHQR-HKRQDIEVGKAVRPQLAMRIGDVNAAWKKLHGK 246

Query: 424 EFTCEYKYDGERAQIHYMENGS-VEVYSRNAEWNTGKFPD---VVAAVSRL--KKTSVSS 477
           +   E K+DG+R QIH  +NG+ +  +SRN       F D      A+S L  +   V  
Sbjct: 247 DVVAECKFDGDRIQIH--KNGTDIHYFSRN-------FLDHSEYAHAMSDLIVQNILVDK 297

Query: 478 FVLDCEVVAYDRAKQRILPF---QVLSTRARKNVAVSDIKVDVCIFAFDLLYLNGQILLQ 534
            +LD E++ +D +  R   F   Q ++  AR+ +   D    +C  AFD+LY+    ++ 
Sbjct: 298 CILDGEMLVWDTSLNRFAEFGSNQEIAKAAREGL---DSHKQLCYVAFDVLYVGDTSVIH 354

Query: 535 ENLKTRREHLYASFEEESGYFQF----------------ATAITSNDVEEIQKFLDKAIG 578
           ++LK R E L    +   G  +                 + +I  +   ++++F  + + 
Sbjct: 355 QSLKERHELLKKVVKPLKGRLEVLVPEGGLNVHRPSGEPSWSIVVHAAADVERFFKETVE 414

Query: 579 ASSEGLIIKTLNEDATYEPSKRSLNWLKLKKDYMDNIGDSLDLVPIAAFHGRGKRTGVYG 638
              EG+++K L  ++ +EP  RS  W+KLK +Y+   G  LD++ I  ++G G+R G   
Sbjct: 415 NRDEGIVLKDL--ESKWEPGDRSGKWMKLKPEYI-RAGADLDVLIIGGYYGSGRRGGEVA 471

Query: 639 AFLLACYDNSN-----EEFQSICKIGTGFSEDVLIERSKGLQTKVIPKPKAYYR------ 687
            FL+A  D +        F S C++GTG S+D L          V+ K K Y+R      
Sbjct: 472 QFLVALADRAEANVYPRRFMSFCRVGTGLSDDEL--------NTVVSKLKPYFRKNEHPK 523

Query: 688 -----YAETIN-----PDVWFEASEVWEVKAADLTISP---VYRAAVGIVDSNKGISLRF 734
                + +  N     PDVW ++ E    K+  L+I+      R+ V +       SLRF
Sbjct: 524 KAPPSFYQVTNHSKERPDVWIDSPE----KSIILSITSDIRTIRSEVFVA----PYSLRF 575

Query: 735 PRLLRVRPDKDPEQATSSEQVAEMYNA 761
           PR+ +VR DK   +    +   E+ N+
Sbjct: 576 PRIDKVRYDKPWHECLDVQAFVELVNS 602