Miyakogusa Predicted Gene

Lj3g3v3033230.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3033230.1 Non Chatacterized Hit- tr|D2DW84|D2DW84_PHAVU
Putative F-box family protein OS=Phaseolus vulgaris
PE,59.09,0.00002,F-box domain,F-box domain, cyclin-like; no
description,NULL; FBOX,F-box domain, cyclin-like; seg,NUL,CUFF.45177.1
         (77 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G40050.1 | Symbols:  | F-box/FBD-like domains containing prot...    47   2e-06
AT4G13960.1 | Symbols:  | F-box/RNI-like superfamily protein | c...    47   2e-06
AT5G02910.1 | Symbols:  | F-box/RNI-like superfamily protein | c...    46   5e-06
AT5G02910.2 | Symbols:  | F-box/RNI-like superfamily protein | c...    46   5e-06
AT5G41840.1 | Symbols:  | F-box/RNI-like superfamily protein | c...    45   9e-06

>AT5G40050.1 | Symbols:  | F-box/FBD-like domains containing
          protein | chr5:16032083-16033551 REVERSE LENGTH=415
          Length = 415

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/31 (64%), Positives = 25/31 (80%)

Query: 2  LPDEIFYHILSVLPTKQAIATSVLSRRWSLL 32
          LPDE+  HILS LPTK+A +TS+LS+RW  L
Sbjct: 19 LPDELLSHILSFLPTKRAASTSILSKRWRTL 49


>AT4G13960.1 | Symbols:  | F-box/RNI-like superfamily protein |
          chr4:8060681-8062231 REVERSE LENGTH=434
          Length = 434

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/35 (62%), Positives = 26/35 (74%)

Query: 2  LPDEIFYHILSVLPTKQAIATSVLSRRWSLLCTSV 36
          LPDE+ YHILS L TK+A  TS+LS+RW  L T V
Sbjct: 7  LPDEVLYHILSFLTTKEAALTSILSKRWRNLFTFV 41


>AT5G02910.1 | Symbols:  | F-box/RNI-like superfamily protein |
          chr5:677120-678907 FORWARD LENGTH=458
          Length = 458

 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 20/28 (71%), Positives = 24/28 (85%)

Query: 2  LPDEIFYHILSVLPTKQAIATSVLSRRW 29
          LPDEI +HILS +PTK AI TS+LS+RW
Sbjct: 16 LPDEILHHILSSVPTKSAIRTSLLSKRW 43


>AT5G02910.2 | Symbols:  | F-box/RNI-like superfamily protein |
          chr5:677120-678588 FORWARD LENGTH=353
          Length = 353

 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 20/28 (71%), Positives = 24/28 (85%)

Query: 2  LPDEIFYHILSVLPTKQAIATSVLSRRW 29
          LPDEI +HILS +PTK AI TS+LS+RW
Sbjct: 16 LPDEILHHILSSVPTKSAIRTSLLSKRW 43


>AT5G41840.1 | Symbols:  | F-box/RNI-like superfamily protein |
          chr5:16754436-16756263 REVERSE LENGTH=540
          Length = 540

 Score = 45.4 bits (106), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query: 2  LPDEIFYHILSVLPTKQAIATSVLSRRWSLLCTSVXXXXXXXXXXXKAMITRTRRSKP-D 60
          LPD +  HILS LPTK+A +T+VL++RW  L   V                R + SK  +
Sbjct: 19 LPDALICHILSFLPTKEAASTTVLAKRWKPLLAFVPNLNFDDSIYFHPRARRNKYSKSYE 78

Query: 61 SFLDFANHV 69
          SF+ F + V
Sbjct: 79 SFMSFVDSV 87