Miyakogusa Predicted Gene

Lj3g3v3032110.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3032110.2 tr|H8MPG2|H8MPG2_CORCM 50S ribosomal protein L9
OS=Corallococcus coralloides (strain ATCC 25202 / DS,42.86,6e-19,L9:
ribosomal protein L9,Ribosomal protein L9, bacteria/chloroplast; 50S
RIBOSOMAL PROTEIN L9,NULL; ,CUFF.45166.2
         (196 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G44890.1 | Symbols: RPL9 | ribosomal protein L9 | chr3:163865...   215   2e-56

>AT3G44890.1 | Symbols: RPL9 | ribosomal protein L9 |
           chr3:16386505-16387963 FORWARD LENGTH=197
          Length = 197

 Score =  215 bits (547), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 110/142 (77%), Positives = 132/142 (92%)

Query: 55  EDVVDVGKKGELLDVRAGFYRNFLLPNGHALLCTPQLLKEMKVEDERIEAEKRRVKEEAQ 114
           EDV D+GK+G+LLDV+AGF+RNFLLP G A L TP LLKE+K+EDERIEAEK+RVKEEAQ
Sbjct: 56  EDVTDLGKQGQLLDVKAGFFRNFLLPTGKAQLMTPLLLKELKMEDERIEAEKQRVKEEAQ 115

Query: 115 QLALIFETVGAFKVRRKGGKGKQIFGSVTAQDLVDIIKAQLQRDVDKRIVDLPEIRETGE 174
           QLA++F+TVGAFKV+RKGGKGK IFGSVTAQDLVDIIK+QLQ+D+DKR+V LPEIRETGE
Sbjct: 116 QLAMVFQTVGAFKVKRKGGKGKLIFGSVTAQDLVDIIKSQLQKDIDKRLVSLPEIRETGE 175

Query: 175 YIAEIKLHPEVTAKVRVTVYGN 196
           YIAE+KLHP+VTA+V++ V+ N
Sbjct: 176 YIAELKLHPDVTARVKINVFAN 197