Miyakogusa Predicted Gene

Lj3g3v3032090.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3032090.1 Non Chatacterized Hit- tr|I1LKY8|I1LKY8_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,85.35,0,ISP
domain,Rieske [2Fe-2S] iron-sulphur domain; Bet v1-like,NULL;
PaO,Pheophorbide a oxygenase; Ries,CUFF.45164.1
         (542 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G44880.1 | Symbols: ACD1, LLS1, PAO | Pheophorbide a oxygenas...   736   0.0  
AT4G25650.1 | Symbols: ACD1-LIKE, PTC52, TIC55-IV | ACD1-like | ...   244   1e-64
AT4G25650.2 | Symbols: ACD1-LIKE, PTC52, TIC55-IV | ACD1-like | ...   235   6e-62
AT2G24820.1 | Symbols: TIC55-II | translocon at the inner envelo...   168   7e-42
AT1G44446.1 | Symbols: CH1, ATCAO, CAO | Pheophorbide a oxygenas...    58   2e-08
AT1G44446.2 | Symbols: CH1, ATCAO, CAO | Pheophorbide a oxygenas...    57   4e-08
AT1G44446.3 | Symbols: CH1, ATCAO, CAO | Pheophorbide a oxygenas...    57   4e-08

>AT3G44880.1 | Symbols: ACD1, LLS1, PAO | Pheophorbide a oxygenase
           family protein with Rieske [2Fe-2S] domain |
           chr3:16383858-16386204 FORWARD LENGTH=537
          Length = 537

 Score =  736 bits (1899), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/510 (68%), Positives = 403/510 (79%), Gaps = 5/510 (0%)

Query: 36  FSTKQARPRSRSNGSLTPPRVAAPTTTIEPDQSYPEAERXXXXXXXXXXXXXXXXXXXXH 95
           F  K +   SRS     P RVAAP +    D +  E +R                    H
Sbjct: 30  FPLKVSISPSRSKLFHNPLRVAAPPSVPTSDST--EEKRIEEEYGGDKEEEGSEFKWRDH 87

Query: 96  WYPVSLIEDLNPRVPTPFQLLGREIVLWYDTAKSQWVAFDDKCPHRLAPLSEGRIDESGN 155
           WYPVSL+EDL+P VPTPFQLLGR++VLW+D    +W AFDD CPHRLAPLSEGR+DE+G+
Sbjct: 88  WYPVSLVEDLDPNVPTPFQLLGRDLVLWFDRNDQKWAAFDDLCPHRLAPLSEGRLDENGH 147

Query: 156 LQCSYHGWSFDGCGSCVVIPQASPQGPEARAVRSPKACVTRFPTLVSQGLLFVWPDENGW 215
           LQCSYHGWSF GCGSC  IPQA+  GPEARAV+SP+AC  +FPT+VSQGLLFVWPDENGW
Sbjct: 148 LQCSYHGWSFGGCGSCTRIPQAATSGPEARAVKSPRACAIKFPTMVSQGLLFVWPDENGW 207

Query: 216 DRANASKPPLLPADFDKPEFATVNIQRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRA 275
           DRAN+ +PP LP DFDKPEF+TV IQRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRA
Sbjct: 208 DRANSIEPPRLPDDFDKPEFSTVTIQRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRA 267

Query: 276 KPLPFKMDSRGPWGFAGANEGNPQISAKFVAPCYYMNKIEIDTKLPVVGDQKWVIWICSF 335
           KPLPFK++S GPWGF GAN+ +P+I+AKFVAPCY MNKIE+D KLP+VG+QKWVIWICSF
Sbjct: 268 KPLPFKVESSGPWGFQGANDDSPRITAKFVAPCYSMNKIELDAKLPIVGNQKWVIWICSF 327

Query: 336 NVPMAPGKTRSIVCSARNFFQFSVPGPAWWQVVPRWYEHWTSNLVYDGDMIVLQGQEKIF 395
           N+PMAPGKTRSIVCSARNFFQFSVPGPAWWQVVPRWYEHWTSNLVYDGDMIVLQGQEK+F
Sbjct: 328 NIPMAPGKTRSIVCSARNFFQFSVPGPAWWQVVPRWYEHWTSNLVYDGDMIVLQGQEKVF 387

Query: 396 LSETEEGG--DINKVYTNITFTPTQADRFVLAFRNWLRRHGNGQPEWFGKT-NKQKLPST 452
           L+++ E    D+NK YT +TFTPTQADRFVLAFRNWLRRHG  QPEWFG T + Q LPST
Sbjct: 388 LAKSMESPDYDVNKQYTKLTFTPTQADRFVLAFRNWLRRHGKSQPEWFGSTPSNQPLPST 447

Query: 453 VLSKREMLDRFEQHTLVCSSCKGAYEGFQTWQKILIGATVVFCATSGIPSDTQXXXXXXX 512
           VL+KR+MLDRF+QHT VCSSCKGAY  FQ  +K L+GATV + AT+G+PSD Q       
Sbjct: 448 VLTKRQMLDRFDQHTQVCSSCKGAYNSFQILKKFLVGATVFWAATAGVPSDVQIRLVLAG 507

Query: 513 XXXXXXXXXXXXNQLQKNFVFVDYVHADID 542
                       ++ +KNFVF DYVH++I+
Sbjct: 508 LSLISAASAYALHEQEKNFVFRDYVHSEIE 537


>AT4G25650.1 | Symbols: ACD1-LIKE, PTC52, TIC55-IV | ACD1-like |
           chr4:13081021-13083153 REVERSE LENGTH=536
          Length = 536

 Score =  244 bits (622), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 151/475 (31%), Positives = 230/475 (48%), Gaps = 50/475 (10%)

Query: 95  HWYPVSLIEDLNPRVPTPFQLLGREIVLWYDTAKSQWVAFDDKCPHRLAPLSEGRIDESG 154
           +WYPV  I DL+ +VP   +++G ++V+W+D  + QW   DD CPHRLAPLS+GRID+ G
Sbjct: 84  NWYPVMPICDLDKKVPHGKKVMGIDLVVWWDRNEKQWKVMDDTCPHRLAPLSDGRIDQWG 143

Query: 155 NLQCSYHGWSFDGCGSCVVIPQASPQGPEARAVRSPKACVTRFPTLVSQGLLFVWP--DE 212
            LQC YHGW F+G G C +IPQA P GP     +  +ACV  +P+ V   +++ WP  D 
Sbjct: 144 RLQCVYHGWCFNGSGDCKLIPQAPPDGPPVHTFK--QACVAVYPSTVQHEIIWFWPNSDP 201

Query: 213 NGWDRANASKPPLLPADFDKPEFATVNIQRDLFYGYDTLMENVSDPSHIDFAHH------ 266
              +    +KPP +P + + P F  +   RD+ YGYD L+EN+ DP+H+ +AH+      
Sbjct: 202 KYKNIIETNKPPYIP-ELEDPSFTKLMGNRDIPYGYDVLVENLMDPAHVPYAHYGLMRFP 260

Query: 267 --KVTGRRDRAKPLPFKMDSRGPWGFAGANEGNPQISAKFVAPCYYMNKI------EIDT 318
             K    R+  KPL   +      GF    E      + F+APC Y +        E + 
Sbjct: 261 KPKEKIDREGGKPLEINVKKLDNKGFFSKQEWG---YSNFIAPCVYRSSTDPLPEQEHEY 317

Query: 319 KLPVVGDQKW-------VIWICSFNVPMAPGKTRSIVCSARNFFQFSVPGPAWWQVVPRW 371
             P   D+         +I+IC   +P++PG++R I    RNF  F        ++VPRW
Sbjct: 318 PAPAASDKAALSKRRLSLIFIC---IPVSPGRSRLIWTFPRNFGVFID------KIVPRW 368

Query: 372 YEHWTSNLVYDGDMIVLQGQEKIFLSETEEGGDINKVYTNITFTPTQADRFVLAFRNWLR 431
             H   N + D D+ +L  +E+  L    E       +    F PT++D  V+ FR W  
Sbjct: 369 VFHIGQNTILDSDLHLLHVEERKILERGPEN------WQKACFIPTKSDANVVTFRRWFN 422

Query: 432 RHGNGQPEWFGKTNKQKLPSTVLSKREMLDRFEQHTLVCSSCKGAYEGFQTWQKILIGAT 491
           ++   + +W GK +   LP T   + ++ DR+  H   CSSCK A++     + IL  A+
Sbjct: 423 KYSEARVDWRGKFDPFLLPPTP-PREQLFDRYWSHVENCSSCKKAHKYLNALEVILQIAS 481

Query: 492 VVFCATSGIPSDTQXXXXXXXXXXXXXXXXXXXNQ-----LQKNFVFVDYVHADI 541
           V       +   T                    ++     + K F + DY HA +
Sbjct: 482 VAMIGVMAVLKQTTMSNVARIAVLVAAVLSFAASKWLSHFIYKTFHYHDYNHAVV 536


>AT4G25650.2 | Symbols: ACD1-LIKE, PTC52, TIC55-IV | ACD1-like |
           chr4:13081021-13083153 REVERSE LENGTH=559
          Length = 559

 Score =  235 bits (600), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 152/498 (30%), Positives = 232/498 (46%), Gaps = 73/498 (14%)

Query: 95  HWYPVSLIEDLNPRVPTPFQLLGREIVLWYDTAKSQWVAFDDKCPHRLAPLSEGRIDESG 154
           +WYPV  I DL+ +VP   +++G ++V+W+D  + QW   DD CPHRLAPLS+GRID+ G
Sbjct: 84  NWYPVMPICDLDKKVPHGKKVMGIDLVVWWDRNEKQWKVMDDTCPHRLAPLSDGRIDQWG 143

Query: 155 NLQCSYHGWSFDGCGSCVVIPQASPQGPEARAVRSPKACVTRFPTLVSQGLLFVWP--DE 212
            LQC YHGW F+G G C +IPQA P GP     +  +ACV  +P+ V   +++ WP  D 
Sbjct: 144 RLQCVYHGWCFNGSGDCKLIPQAPPDGPPVHTFK--QACVAVYPSTVQHEIIWFWPNSDP 201

Query: 213 NGWDRANASKPPLLPADFDKPEFATVNIQRDLFYGYDTLMENVSDPSHIDFAHH------ 266
              +    +KPP +P + + P F  +   RD+ YGYD L+EN+ DP+H+ +AH+      
Sbjct: 202 KYKNIIETNKPPYIP-ELEDPSFTKLMGNRDIPYGYDVLVENLMDPAHVPYAHYGLMRFP 260

Query: 267 KVTGR-------------------------RDRAKPLPFKMDSRGPWGFAGANEGNPQIS 301
           K  G+                         R+  KPL   +      GF    E      
Sbjct: 261 KPKGKYIICISNSCFNPFTNLQILLAEKIDREGGKPLEINVKKLDNKGFFSKQEWG---Y 317

Query: 302 AKFVAPCYYMNKI------EIDTKLPVVGDQKW-------VIWICSFNVPMAPGKTRSIV 348
           + F+APC Y +        E +   P   D+         +I+IC   +P++PG++R I 
Sbjct: 318 SNFIAPCVYRSSTDPLPEQEHEYPAPAASDKAALSKRRLSLIFIC---IPVSPGRSRLIW 374

Query: 349 CSARNFFQFSVPGPAWWQVVPRWYEHWTSNLVYDGDMIVLQGQEKIFLSETEEGGDINKV 408
              RNF  F        ++VPRW  H   N + D D+ +L  +E+  L    E       
Sbjct: 375 TFPRNFGVFID------KIVPRWVFHIGQNTILDSDLHLLHVEERKILERGPEN------ 422

Query: 409 YTNITFTPTQADRFVLAFRNWLRRHGNGQPEWFGKTNKQKLPSTVLSKREMLDRFEQHTL 468
           +    F PT++D  V+ FR W  ++   + +W GK +   LP T   + ++ DR+  H  
Sbjct: 423 WQKACFIPTKSDANVVTFRRWFNKYSEARVDWRGKFDPFLLPPTP-PREQLFDRYWSHVE 481

Query: 469 VCSSCKGAYEGFQTWQKILIGATVVFCATSGIPSDTQXXXXXXXXXXXXXXXXXXXNQ-- 526
            CSSCK A++     + IL  A+V       +   T                    ++  
Sbjct: 482 NCSSCKKAHKYLNALEVILQIASVAMIGVMAVLKQTTMSNVARIAVLVAAVLSFAASKWL 541

Query: 527 ---LQKNFVFVDYVHADI 541
              + K F + DY HA +
Sbjct: 542 SHFIYKTFHYHDYNHAVV 559


>AT2G24820.1 | Symbols: TIC55-II | translocon at the inner envelope
           membrane of chloroplasts 55-II | chr2:10575038-10576829
           FORWARD LENGTH=539
          Length = 539

 Score =  168 bits (426), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 125/429 (29%), Positives = 200/429 (46%), Gaps = 69/429 (16%)

Query: 96  WYPVSLIEDLNPRVPTPFQLLGREIVLWYDTAKSQWVAFDDKCPHRLAPLSEGRIDESGN 155
           WYP+ L +++    P    +  R+IVL+ D  +     ++D+CPHRLA LSEG++ + G 
Sbjct: 88  WYPLYLTKNVPEDAPLGLTVYDRQIVLYKD-GEGTLRCYEDRCPHRLAKLSEGQLID-GR 145

Query: 156 LQCSYHGWSFDGCGSCVVIPQ--ASPQGPEARAVRSPKACVTRFPTLVSQGLLFVWPDEN 213
           L+C YHGW F+G G CV IPQ  AS + P+A       ACV  +    SQG+++VW    
Sbjct: 146 LECLYHGWQFEGEGKCVKIPQLPASAKIPKA-------ACVKTYEVKDSQGVVWVW---- 194

Query: 214 GWDRANASKPPLLP--ADFDKPEFATVNIQRDLFYGYDTLMENVSDPSHIDFAHHKV--T 269
                    P  LP   +F +P F  ++   +L Y +  L+EN+ DP+H+  +H +   T
Sbjct: 195 -MSTKTPPNPEKLPWFENFARPGFFDISTTHELPYDHSILLENLMDPAHVPISHDRTDFT 253

Query: 270 GRRDRAKPLPFKMDSRGPWGFAGA-----NEGNPQISAKFVAPCYYMNKIEIDTKLPVVG 324
            +R+ A+PL F++  R   GFAG        G      +F APC   N  E + K   V 
Sbjct: 254 AKREDAQPLVFEVTERSNRGFAGTWGREKEGGKGSNLLRFDAPCVLQNNREFEGK-DGVK 312

Query: 325 DQKWVIWICSFNVPMAPGKTRSIVCSARNFFQFSVPGPA-WWQVVPRWYEHWTSNLVYDG 383
           +    +++C    P   GK+  IV       +F V   +    V+P+W+ H  +  V++ 
Sbjct: 313 NYFSGLFLCR---PTGQGKSMLIV-------RFGVTKRSPLVSVLPQWFWHQNACKVFEQ 362

Query: 384 DMIVLQGQEKIFLSETEEGGDINKVYTNITFTPTQADRFVLAFRNWLRRHGNGQPEWFGK 443
           DM  L  Q ++ + E     D+   Y N+      +D +V  +R W+ + G+G P  FG 
Sbjct: 363 DMGFLSSQNEVLMKEKVPTKDL---YLNL----KSSDTWVAEYRKWMDKVGHGMPYHFGH 415

Query: 444 TNKQ--KLPSTV-----------------------LSKREMLDRFEQHTLVCSSCKGAYE 478
                 K+P  V                       +    + +R+ +H + C SC    +
Sbjct: 416 RTISLPKVPPVVEHAPAGLIAALSASYPAKGGIGTMHAPNLANRYFRHIIHCRSCSNVIK 475

Query: 479 GFQTWQKIL 487
            F+ W+ IL
Sbjct: 476 SFELWKNIL 484


>AT1G44446.1 | Symbols: CH1, ATCAO, CAO | Pheophorbide a oxygenase
           family protein with Rieske [2Fe-2S] domain |
           chr1:16848664-16851152 REVERSE LENGTH=536
          Length = 536

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 75/340 (22%), Positives = 133/340 (39%), Gaps = 45/340 (13%)

Query: 96  WYPVSLIEDLNPRVPTPFQLLGREIVLWYDTAKSQWVAFDDKCPHRLAPLSEGRIDESGN 155
           WYPV+   DL      P +   +  V+ +     +     + C HR  PL  G ++E G 
Sbjct: 221 WYPVAFTADLKHDTMVPIECFEQPWVI-FRGEDGKPGCVRNTCAHRACPLDLGTVNE-GR 278

Query: 156 LQCSYHGWSFDGCGSCVVIPQASPQGPEARAVRSPKACVTRFPTLVSQGLLFVWPDENGW 215
           +QC YHGW +   G C  +P          + +  K  +   P L  +G++++WP     
Sbjct: 279 IQCPYHGWEYSTDGECKKMP----------STKLLKVKIKSLPCLEQEGMIWIWP----- 323

Query: 216 DRANASKPPLLPADFDKPEFAT-VNIQRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDR 274
              +    P+LP+      F     +  DL   +  L++N+ D +H  F H   T    +
Sbjct: 324 --GDEPPAPILPSLQPPSGFLIHAELVMDLPVEHGLLLDNLLDLAHAPFTH---TSTFAK 378

Query: 275 AKPLPFKMDSRGPW-GFAGANEGNPQISAKFVAPCYYMNKIEIDT--KLPVVGDQKWVIW 331
              +P  +    P  G  G  +  P I  +F  PC  ++ I I    KL     Q+    
Sbjct: 379 GWSVPSLVKFLTPTSGLQGYWDPYP-IDMEFKPPCIVLSTIGISKPGKLEGKSTQQCATH 437

Query: 332 ICSFNVPMAPGKTRSIVCSARNFFQFSVPGPAWWQVVPRWYEHWT--SNLVYDGDMIVLQ 389
           +   +V +   K ++     R  ++ S+      + +P     W   +  V + D+ ++ 
Sbjct: 438 LHQLHVCLPSSKNKT-----RLLYRMSLDFAPILKNLPFMEHLWRHFAEQVLNEDLRLVL 492

Query: 390 GQEKIFLSETEEGGDINKVYTNITFTPTQADRFVLAFRNW 429
           GQ++  L+             NI   P   D+  + +R W
Sbjct: 493 GQQERMLNG-----------ANIWNLPVAYDKLGVRYRLW 521


>AT1G44446.2 | Symbols: CH1, ATCAO, CAO | Pheophorbide a oxygenase
           family protein with Rieske [2Fe-2S] domain |
           chr1:16848822-16851152 REVERSE LENGTH=511
          Length = 511

 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 12/118 (10%)

Query: 96  WYPVSLIEDLNPRVPTPFQLLGREIVLWYDTAKSQWVAFDDKCPHRLAPLSEGRIDESGN 155
           WYPV+   DL      P +   +  V+ +     +     + C HR  PL  G ++E G 
Sbjct: 221 WYPVAFTADLKHDTMVPIECFEQPWVI-FRGEDGKPGCVRNTCAHRACPLDLGTVNE-GR 278

Query: 156 LQCSYHGWSFDGCGSCVVIPQASPQGPEARAVRSPKACVTRFPTLVSQGLLFVWPDEN 213
           +QC YHGW +   G C  +P          + +  K  +   P L  +G++++WP + 
Sbjct: 279 IQCPYHGWEYSTDGECKKMP----------STKLLKVKIKSLPCLEQEGMIWIWPGDE 326


>AT1G44446.3 | Symbols: CH1, ATCAO, CAO | Pheophorbide a oxygenase
           family protein with Rieske [2Fe-2S] domain |
           chr1:16849132-16851152 REVERSE LENGTH=433
          Length = 433

 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 12/118 (10%)

Query: 96  WYPVSLIEDLNPRVPTPFQLLGREIVLWYDTAKSQWVAFDDKCPHRLAPLSEGRIDESGN 155
           WYPV+   DL      P +   +  V+ +     +     + C HR  PL  G ++E G 
Sbjct: 221 WYPVAFTADLKHDTMVPIECFEQPWVI-FRGEDGKPGCVRNTCAHRACPLDLGTVNE-GR 278

Query: 156 LQCSYHGWSFDGCGSCVVIPQASPQGPEARAVRSPKACVTRFPTLVSQGLLFVWPDEN 213
           +QC YHGW +   G C  +P          + +  K  +   P L  +G++++WP + 
Sbjct: 279 IQCPYHGWEYSTDGECKKMP----------STKLLKVKIKSLPCLEQEGMIWIWPGDE 326