Miyakogusa Predicted Gene

Lj3g3v3026740.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3026740.1 Non Chatacterized Hit- tr|C5XVQ2|C5XVQ2_SORBI
Putative uncharacterized protein Sb04g023870
OS=Sorghu,38.12,2e-19,NAP-like,NULL; NAP,Nucleosome assembly protein
(NAP); SUBFAMILY NOT NAMED,NULL; TESTIS-SPECIFIC Y-EN,gene.g50169.t1.1
         (169 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G74560.3 | Symbols: NRP1 | NAP1-related protein 1 | chr1:2801...   148   2e-36
AT1G74560.1 | Symbols: NRP1 | NAP1-related protein 1 | chr1:2801...   147   3e-36
AT1G74560.2 | Symbols: NRP1 | NAP1-related protein 1 | chr1:2801...   146   7e-36
AT1G18800.1 | Symbols: NRP2 | NAP1-related protein 2 | chr1:6481...   142   1e-34

>AT1G74560.3 | Symbols: NRP1 | NAP1-related protein 1 |
           chr1:28017763-28019900 REVERSE LENGTH=264
          Length = 264

 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 84/182 (46%), Positives = 108/182 (59%), Gaps = 22/182 (12%)

Query: 1   MEKLEEMEDKINLIHMMA----FQVDD-YKERLKSAYQERSKIIDSIPGFWFTVVLLKHP 55
           +EKL+E++D +  I+  A     +V+  Y    K  Y +R+++I SIPGFW T   L HP
Sbjct: 31  IEKLQEIQDDLEKINEKASDEVLEVEQKYNVIRKPVYDKRNEVIQSIPGFWMTA-FLSHP 89

Query: 56  AYRQLFNQEDHKIFQYFTSLEVEDDMDVNSSYSITFNFKPNPYFENTKLQKTLTFLQEGT 115
           A   L  +ED KIF+Y  SLEVED  DV S YSITF+F  NP+FE+ KL KT TFL+EGT
Sbjct: 90  ALGDLLTEEDQKIFKYLNSLEVEDAKDVKSGYSITFHFTSNPFFEDAKLTKTFTFLEEGT 149

Query: 116 TKITATPIKWKQNNQVPADF---------------GFFSWFTMTEQKDDVH-HIHDEFQY 159
           TKITATPIKWK+   +P                   FF+WFT  + K+D    IHDE   
Sbjct: 150 TKITATPIKWKEGKGLPNGVNHDDKKGNKRALPEESFFTWFTDAQHKEDAGDEIHDEVAD 209

Query: 160 LI 161
           +I
Sbjct: 210 II 211


>AT1G74560.1 | Symbols: NRP1 | NAP1-related protein 1 |
           chr1:28017815-28019900 REVERSE LENGTH=256
          Length = 256

 Score =  147 bits (371), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 84/182 (46%), Positives = 108/182 (59%), Gaps = 22/182 (12%)

Query: 1   MEKLEEMEDKINLIHMMA----FQVDD-YKERLKSAYQERSKIIDSIPGFWFTVVLLKHP 55
           +EKL+E++D +  I+  A     +V+  Y    K  Y +R+++I SIPGFW T   L HP
Sbjct: 31  IEKLQEIQDDLEKINEKASDEVLEVEQKYNVIRKPVYDKRNEVIQSIPGFWMTA-FLSHP 89

Query: 56  AYRQLFNQEDHKIFQYFTSLEVEDDMDVNSSYSITFNFKPNPYFENTKLQKTLTFLQEGT 115
           A   L  +ED KIF+Y  SLEVED  DV S YSITF+F  NP+FE+ KL KT TFL+EGT
Sbjct: 90  ALGDLLTEEDQKIFKYLNSLEVEDAKDVKSGYSITFHFTSNPFFEDAKLTKTFTFLEEGT 149

Query: 116 TKITATPIKWKQNNQVPADF---------------GFFSWFTMTEQKDDVH-HIHDEFQY 159
           TKITATPIKWK+   +P                   FF+WFT  + K+D    IHDE   
Sbjct: 150 TKITATPIKWKEGKGLPNGVNHDDKKGNKRALPEESFFTWFTDAQHKEDAGDEIHDEVAD 209

Query: 160 LI 161
           +I
Sbjct: 210 II 211


>AT1G74560.2 | Symbols: NRP1 | NAP1-related protein 1 |
           chr1:28017815-28019900 REVERSE LENGTH=257
          Length = 257

 Score =  146 bits (368), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 83/177 (46%), Positives = 106/177 (59%), Gaps = 22/177 (12%)

Query: 1   MEKLEEMEDKINLIHMMA----FQVDD-YKERLKSAYQERSKIIDSIPGFWFTVVLLKHP 55
           +EKL+E++D +  I+  A     +V+  Y    K  Y +R+++I SIPGFW T   L HP
Sbjct: 31  IEKLQEIQDDLEKINEKASDEVLEVEQKYNVIRKPVYDKRNEVIQSIPGFWMTA-FLSHP 89

Query: 56  AYRQLFNQEDHKIFQYFTSLEVEDDMDVNSSYSITFNFKPNPYFENTKLQKTLTFLQEGT 115
           A   L  +ED KIF+Y  SLEVED  DV S YSITF+F  NP+FE+ KL KT TFL+EGT
Sbjct: 90  ALGDLLTEEDQKIFKYLNSLEVEDAKDVKSGYSITFHFTSNPFFEDAKLTKTFTFLEEGT 149

Query: 116 TKITATPIKWKQNNQVPADF---------------GFFSWFTMTEQKDDVH-HIHDE 156
           TKITATPIKWK+   +P                   FF+WFT  + K+D    IHDE
Sbjct: 150 TKITATPIKWKEGKGLPNGVNHDDKKGNKRALPEESFFTWFTDAQHKEDAGDEIHDE 206


>AT1G18800.1 | Symbols: NRP2 | NAP1-related protein 2 |
           chr1:6481466-6483463 REVERSE LENGTH=256
          Length = 256

 Score =  142 bits (358), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 81/177 (45%), Positives = 109/177 (61%), Gaps = 23/177 (12%)

Query: 1   MEKLEEMEDKINLIHMMA----FQVDD-YKERLKSAYQERSKIIDSIPGFWFTVVLLKHP 55
           +EKL+E++D +  I+  A     +V+  Y    K  Y +R++II +IP FW T   L HP
Sbjct: 27  IEKLQEIQDDLEKINEKASDEVLEVEQKYNVIRKPVYDKRNEIIKTIPDFWLTA-FLSHP 85

Query: 56  AYRQLFNQEDHKIFQYFTSLEVEDDMDVNSSYSITFNFKPNPYFENTKLQKTLTFLQEGT 115
           A  +L  +ED KIF+Y +SL+VED  DV S YSITF+F PNP+FE+ KL KT TFL+EGT
Sbjct: 86  ALGELLTEEDQKIFKYLSSLDVEDAKDVKSGYSITFSFNPNPFFEDGKLTKTFTFLEEGT 145

Query: 116 TKITATPIKWKQ--------------NNQVPADFGFFSWFTMTEQKDDVHHIHDEFQ 158
           TKITATPIKWK+              N +   +  FF+WF+  + K+DV    DE Q
Sbjct: 146 TKITATPIKWKEGKGLANGVNHEKNGNKRALPEESFFTWFSDAQHKEDV---EDEMQ 199