Miyakogusa Predicted Gene

Lj3g3v3016620.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3016620.1 tr|B9MYK7|B9MYK7_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_594846 PE=4
SV=1,53.85,4e-18,DUF296,Domain of unknown function DUF296; no
description,NULL,gene.g50159.t1.1
         (140 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G62260.1 | Symbols:  | AT hook motif DNA-binding family prote...    49   1e-06

>AT5G62260.1 | Symbols:  | AT hook motif DNA-binding family protein
           | chr5:25009331-25011348 FORWARD LENGTH=404
          Length = 404

 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 33/49 (67%), Gaps = 3/49 (6%)

Query: 6   LTVSLAKPDGTVFGGNVESSLIAAGPIQLILATF---KQNISNQIKKRR 51
           +++SLA P+G +FGG +   LIAAGP+Q+++ +F    Q   NQ KK R
Sbjct: 242 MSISLAGPNGNIFGGGLAGMLIAAGPVQVVMGSFIVMHQAEQNQKKKPR 290