Miyakogusa Predicted Gene

Lj3g3v3006550.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3006550.1 tr|F2D013|F2D013_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2 SV=1,57.14,0.018,RNA-binding
domain, RBD,NULL; CCCH zinc finger,NULL; U2AUXFACTOR,U2 auxiliary
factor small subunit; ,NODE_63306_length_883_cov_103.347679.path2.1
         (283 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G42820.1 | Symbols: ATU2AF35B, U2AF35B | Zinc finger C-x8-C-x...   343   9e-95
AT5G42820.2 | Symbols: ATU2AF35B, U2AF35B | Zinc finger C-x8-C-x...   343   9e-95
AT1G27650.1 | Symbols: ATU2AF35A | U2 snRNP auxiliary factor sma...   330   9e-91
AT1G27650.2 | Symbols: ATU2AF35A | U2 snRNP auxiliary factor sma...   228   3e-60
AT1G10320.1 | Symbols:  | Zinc finger C-x8-C-x5-C-x3-H type fami...   137   6e-33
AT3G44785.1 | Symbols:  | Zinc finger C-x8-C-x5-C-x3-H type fami...   107   1e-23

>AT5G42820.1 | Symbols: ATU2AF35B, U2AF35B | Zinc finger
           C-x8-C-x5-C-x3-H type family protein |
           chr5:17170445-17171296 REVERSE LENGTH=283
          Length = 283

 Score =  343 bits (879), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 179/281 (63%), Positives = 205/281 (72%), Gaps = 6/281 (2%)

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDIVTP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPTLLLSNMYQRPD++TP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQTHFDDFYQDLFDELSKYGRLQTLNVCDNLADHMVGNVYAQFREEE 120
           GVD QGQP+DP KIQ HF+DFY+D+F+EL+K+G +++LNVCDNLADHM+GNVY  F+EE+
Sbjct: 61  GVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEED 120

Query: 121 HAAEALKNLTGRFYAGNPIIVDFSPVTDFREATCRQYEEDSCNRGGYCNFMHLKKISREL 180
           HAA AL+ L GRFY+G PII DFSPVTDFREATCRQYEE+SCNRGGYCNFMH+K+ISREL
Sbjct: 121 HAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISREL 180

Query: 181 RRELFGMDNRGRHGRSRSPDRHRSNEDRSP------RGHSRKYDXXXXXXXXXXXXXXXX 234
           RR+LFG   R     SRS  R  S   +        RG  R  D                
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSISPRRKREHSRERERGDVRDRDRHGNGKRSSDRSERHD 240

Query: 235 XXXXXXXXXXXXXXXXXXXXARDGSEERRARIEQWNREREE 275
                                R+GSEERRARIEQWNRER+E
Sbjct: 241 RDGGGRRRHGSPKRSRSPRNVREGSEERRARIEQWNRERDE 281


>AT5G42820.2 | Symbols: ATU2AF35B, U2AF35B | Zinc finger
           C-x8-C-x5-C-x3-H type family protein |
           chr5:17170445-17171296 REVERSE LENGTH=283
          Length = 283

 Score =  343 bits (879), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 179/281 (63%), Positives = 205/281 (72%), Gaps = 6/281 (2%)

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDIVTP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPTLLLSNMYQRPD++TP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQTHFDDFYQDLFDELSKYGRLQTLNVCDNLADHMVGNVYAQFREEE 120
           GVD QGQP+DP KIQ HF+DFY+D+F+EL+K+G +++LNVCDNLADHM+GNVY  F+EE+
Sbjct: 61  GVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEED 120

Query: 121 HAAEALKNLTGRFYAGNPIIVDFSPVTDFREATCRQYEEDSCNRGGYCNFMHLKKISREL 180
           HAA AL+ L GRFY+G PII DFSPVTDFREATCRQYEE+SCNRGGYCNFMH+K+ISREL
Sbjct: 121 HAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISREL 180

Query: 181 RRELFGMDNRGRHGRSRSPDRHRSNEDRSP------RGHSRKYDXXXXXXXXXXXXXXXX 234
           RR+LFG   R     SRS  R  S   +        RG  R  D                
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSISPRRKREHSRERERGDVRDRDRHGNGKRSSDRSERHD 240

Query: 235 XXXXXXXXXXXXXXXXXXXXARDGSEERRARIEQWNREREE 275
                                R+GSEERRARIEQWNRER+E
Sbjct: 241 RDGGGRRRHGSPKRSRSPRNVREGSEERRARIEQWNRERDE 281


>AT1G27650.1 | Symbols: ATU2AF35A | U2 snRNP auxiliary factor small
           subunit, putative | chr1:9615152-9616042 FORWARD
           LENGTH=296
          Length = 296

 Score =  330 bits (845), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 175/285 (61%), Positives = 203/285 (71%), Gaps = 15/285 (5%)

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDIVTP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPTLLLSNMYQRPD++TP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQTHFDDFYQDLFDELSKYGRLQTLNVCDNLADHMVGNVYAQFREEE 120
           GVDAQGQP+DPRKIQ HF+DF++DLF+EL K+G +++LN+CDNLADHM+GNVY QF+EE+
Sbjct: 61  GVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEED 120

Query: 121 HAAEALKNLTGRFYAGNPIIVDFSPVTDFREATCRQYEEDSCNRGGYCNFMHLKKISREL 180
            AA AL+ L GRFY+G PII DFSPVTDFREATCRQYEE++CNRGGYCNFMH+K +SREL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLVSREL 180

Query: 181 RRELFGMDNRGRHGRSR--------SPDRHRSNEDRSP-------RGHSRKYDXXXXXXX 225
           RR+LFG   R     SR        SP   R N+ R P       R   R++        
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSRSISPRNKRDNDRRDPSHREFSHRDRDREFYRHGSGKR 240

Query: 226 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXARDGSEERRARIEQWN 270
                                         R+GSEERRARIEQWN
Sbjct: 241 SSERSERQERDGSRGRRQASPKRGGSPGGGREGSEERRARIEQWN 285


>AT1G27650.2 | Symbols: ATU2AF35A | U2 snRNP auxiliary factor small
           subunit, putative | chr1:9615302-9616042 FORWARD
           LENGTH=246
          Length = 246

 Score =  228 bits (581), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 128/235 (54%), Positives = 154/235 (65%), Gaps = 15/235 (6%)

Query: 51  MYQRPDIVTPGVDAQGQPIDPRKIQTHFDDFYQDLFDELSKYGRLQTLNVCDNLADHMVG 110
           MYQRPD++TPGVDAQGQP+DPRKIQ HF+DF++DLF+EL K+G +++LN+CDNLADHM+G
Sbjct: 1   MYQRPDMITPGVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIG 60

Query: 111 NVYAQFREEEHAAEALKNLTGRFYAGNPIIVDFSPVTDFREATCRQYEEDSCNRGGYCNF 170
           NVY QF+EE+ AA AL+ L GRFY+G PII DFSPVTDFREATCRQYEE++CNRGGYCNF
Sbjct: 61  NVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNF 120

Query: 171 MHLKKISRELRRELFGMDNRGRHGRSR--------SPDRHRSNEDRSP-------RGHSR 215
           MH+K +SRELRR+LFG   R     SR        SP   R N+ R P       R   R
Sbjct: 121 MHVKLVSRELRRKLFGRYRRSYRRGSRSRSRSRSISPRNKRDNDRRDPSHREFSHRDRDR 180

Query: 216 KYDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARDGSEERRARIEQWN 270
           ++                                      R+GSEERRARIEQWN
Sbjct: 181 EFYRHGSGKRSSERSERQERDGSRGRRQASPKRGGSPGGGREGSEERRARIEQWN 235


>AT1G10320.1 | Symbols:  | Zinc finger C-x8-C-x5-C-x3-H type family
           protein | chr1:3384164-3388373 REVERSE LENGTH=757
          Length = 757

 Score =  137 bits (346), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 65/167 (38%), Positives = 99/167 (59%), Gaps = 5/167 (2%)

Query: 9   FGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDIVTPGVDAQGQP 68
           FGTE+D+ +CPF+ K GACR G RCSR+H  P+ S TLL+ NMY  P I       +G  
Sbjct: 237 FGTEQDKAHCPFHLKTGACRFGQRCSRVHFYPNKSCTLLMKNMYNGPGITWE--QDEGLE 294

Query: 69  IDPRKIQTHFDDFYQDLFDELSKYGRLQTLNVCDNLADHMVGNVYAQFREEEHAAEALKN 128
               + +  +++FY+D+  E  KYG L    VC N + H+ GNVY  +R  E A  A ++
Sbjct: 295 YTDEEAELCYEEFYEDVHTEFLKYGELVNFKVCRNGSFHLKGNVYVHYRSLESAILAYQS 354

Query: 129 LTGRFYAGNPIIVDFSPVTDFREATCRQYEED---SCNRGGYCNFMH 172
           + GR++AG  +  +F  ++ ++ A C +Y +    +C+RG  CNF+H
Sbjct: 355 INGRYFAGKQVNCEFVNISRWKVAICGEYMKSRLKTCSRGSACNFIH 401


>AT3G44785.1 | Symbols:  | Zinc finger C-x8-C-x5-C-x3-H type
          family protein | chr3:16328221-16328448 REVERSE
          LENGTH=75
          Length = 75

 Score =  107 bits (267), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 51/73 (69%), Positives = 58/73 (79%)

Query: 1  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDIVTP 60
          M EHLASI+GTEKDRVNCPFYFKIG CR+GDRCSRL+TKPSISPTLLLSN YQ+  +   
Sbjct: 1  MVEHLASIYGTEKDRVNCPFYFKIGVCRNGDRCSRLYTKPSISPTLLLSNTYQQGRLKQF 60

Query: 61 GVDAQGQPIDPRK 73
              Q +  DP+K
Sbjct: 61 LDPVQSREKDPKK 73