Miyakogusa Predicted Gene
- Lj3g3v3006470.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v3006470.1 Non Chatacterized Hit- tr|I1HFP1|I1HFP1_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,39.39,9e-19,FAMILY NOT NAMED,NULL; seg,NULL,CUFF.45192.1
(297 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G44750.2 | Symbols: HDA3 | histone deacetylase 3 | chr3:16298... 98 8e-21
AT3G44750.1 | Symbols: HD2A, ATHD2A, HDA3, HDT1 | histone deacet... 98 8e-21
AT5G03740.1 | Symbols: HD2C, HDT3 | histone deacetylase 2C | chr... 92 6e-19
AT5G22650.1 | Symbols: HD2B, HDT02, HDT2, ATHD2B, HDA4, HD2, ATH... 84 1e-16
AT5G22650.2 | Symbols: HD2B, HDT02, HDT2, ATHD2B, HDA4, HD2 | hi... 84 1e-16
AT2G27840.1 | Symbols: HDT4, HDA13, HDT04 | histone deacetylase-... 65 7e-11
>AT3G44750.2 | Symbols: HDA3 | histone deacetylase 3 |
chr3:16298045-16299585 FORWARD LENGTH=242
Length = 242
Score = 97.8 bits (242), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 64/97 (65%), Gaps = 4/97 (4%)
Query: 5 MEFWGVEVKVGQTVKVEPSEPFPGYIHISQAALGEATKKDKAAEPVILYLKVEDKKYVLG 64
MEFWG+EVK G+ V V P E IH+SQA+LGE K+K E V L++KV ++ VLG
Sbjct: 1 MEFWGIEVKSGKPVTVTPEEGI--LIHVSQASLGEC--KNKKGEFVPLHVKVGNQNLVLG 56
Query: 65 TLNRDDIPHLSMDLVLDDKSELSHNSKGASVYFCGYK 101
TL+ ++IP L DLV D + ELSH SVYF GYK
Sbjct: 57 TLSTENIPQLFCDLVFDKEFELSHTWGKGSVYFVGYK 93
>AT3G44750.1 | Symbols: HD2A, ATHD2A, HDA3, HDT1 | histone
deacetylase 3 | chr3:16298045-16299585 FORWARD
LENGTH=245
Length = 245
Score = 97.8 bits (242), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 64/97 (65%), Gaps = 4/97 (4%)
Query: 5 MEFWGVEVKVGQTVKVEPSEPFPGYIHISQAALGEATKKDKAAEPVILYLKVEDKKYVLG 64
MEFWG+EVK G+ V V P E IH+SQA+LGE K+K E V L++KV ++ VLG
Sbjct: 1 MEFWGIEVKSGKPVTVTPEEGI--LIHVSQASLGEC--KNKKGEFVPLHVKVGNQNLVLG 56
Query: 65 TLNRDDIPHLSMDLVLDDKSELSHNSKGASVYFCGYK 101
TL+ ++IP L DLV D + ELSH SVYF GYK
Sbjct: 57 TLSTENIPQLFCDLVFDKEFELSHTWGKGSVYFVGYK 93
>AT5G03740.1 | Symbols: HD2C, HDT3 | histone deacetylase 2C |
chr5:981994-983961 FORWARD LENGTH=294
Length = 294
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 62/98 (63%), Gaps = 4/98 (4%)
Query: 5 MEFWGVEVKVGQTVKVEPSEPFPGYIHISQAALGEATKKDKAAEPVILYLKVEDKKYVLG 64
MEFWGVEVK G+ + ++P +HISQ ALGE+ K+ EP+ LY+ V K ++G
Sbjct: 1 MEFWGVEVKNGKPLHLDPG--LDRLVHISQVALGES--KNNVTEPIQLYVTVGSDKLLIG 56
Query: 65 TLNRDDIPHLSMDLVLDDKSELSHNSKGASVYFCGYKV 102
TL+ + P LS ++VL+ LSH K SV+F GYKV
Sbjct: 57 TLSHEKFPQLSTEIVLERNFALSHTWKNGSVFFSGYKV 94
>AT5G22650.1 | Symbols: HD2B, HDT02, HDT2, ATHD2B, HDA4, HD2, ATHD2
| histone deacetylase 2B | chr5:7534120-7536054 FORWARD
LENGTH=306
Length = 306
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 5 MEFWGVEVKVGQTVKVEPSEPFPGYIHISQAALGEATKKDKAAEPVILYLKVEDKKYVLG 64
MEFWGV V KV P E +HISQA+L K + E V+L + V K V+G
Sbjct: 1 MEFWGVAVTPKNATKVTPEED--SLVHISQASLDCTVK---SGESVVLSVTVGGAKLVIG 55
Query: 65 TLNRDDIPHLSMDLVLDDKSELSHNSKGASVYFCGYK 101
TL++D P +S DLV D + ELSH+ A+V+F GYK
Sbjct: 56 TLSQDKFPQISFDLVFDKEFELSHSGTKANVHFIGYK 92
>AT5G22650.2 | Symbols: HD2B, HDT02, HDT2, ATHD2B, HDA4, HD2 |
histone deacetylase 2B | chr5:7534120-7536054 FORWARD
LENGTH=305
Length = 305
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 5 MEFWGVEVKVGQTVKVEPSEPFPGYIHISQAALGEATKKDKAAEPVILYLKVEDKKYVLG 64
MEFWGV V KV P E +HISQA+L K + E V+L + V K V+G
Sbjct: 1 MEFWGVAVTPKNATKVTPEED--SLVHISQASLDCTVK---SGESVVLSVTVGGAKLVIG 55
Query: 65 TLNRDDIPHLSMDLVLDDKSELSHNSKGASVYFCGYK 101
TL++D P +S DLV D + ELSH+ A+V+F GYK
Sbjct: 56 TLSQDKFPQISFDLVFDKEFELSHSGTKANVHFIGYK 92
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 38/60 (63%), Gaps = 5/60 (8%)
Query: 207 TPAKKVDQGKKRPNESASKTPVSG-----KKAKNATPEKPDGKKNVHTATPHPKKQDGKT 261
TP K KKRPNES SKTPVSG A +TP+K + KK HTATPHP K+ GK+
Sbjct: 199 TPKKPEPINKKRPNESVSKTPVSGKKAKPAAAPASTPQKTEKKKGGHTATPHPAKKGGKS 258
>AT2G27840.1 | Symbols: HDT4, HDA13, HDT04 | histone
deacetylase-related / HD-related |
chr2:11862085-11863707 FORWARD LENGTH=203
Length = 203
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 60/101 (59%), Gaps = 7/101 (6%)
Query: 5 MEFWGVEVKVGQTVKVEPSEPFPGYIHISQAALGEATKKDKAAEPVILYLKVEDKK--YV 62
MEFWG+E+K G+ KV + F +H SQ LG+ +K K E +Y+K+ D + ++
Sbjct: 1 MEFWGIEIKPGKPFKVIQKDGF--MVHASQVTLGD-VEKVKKDETFAVYVKIGDDENGFM 57
Query: 63 LGTLNRDDIPHLSMDLVLDDKSELSHNSKGASVYFCGYKVL 103
+G L++ P S+DL L + E+SHNS +SVY GY+
Sbjct: 58 IGNLSQ-KFPQFSIDLYLGHEFEISHNST-SSVYLIGYRTF 96