Miyakogusa Predicted Gene

Lj3g3v2996010.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2996010.1 tr|B6UEL5|B6UEL5_MAIZE COX VIIa-like protein
OS=Zea mays PE=4 SV=1,82.69,3e-18,COX7a,Cytochrome c oxidase, subunit
VIIa,CUFF.45145.1
         (67 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G21105.1 | Symbols:  | cytochrome-c oxidases;electron carrier...   113   2e-26
AT4G21105.2 | Symbols:  | cytochrome-c oxidases;electron carrier...    65   1e-11

>AT4G21105.1 | Symbols:  | cytochrome-c oxidases;electron carriers
          | chr4:11266273-11266724 FORWARD LENGTH=68
          Length = 68

 Score =  113 bits (283), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 53/67 (79%), Positives = 60/67 (89%)

Query: 1  MSEAPFTPREKLFEKQKYFQNIQKHTYLKGRYDKITSVAIPIALAASSLFMIGRGIYNMS 60
          ++E PF PREKL EKQ+ FQ+IQ+HTYLKG  DKITSVAIPIALAASSL+MIG GIYNMS
Sbjct: 2  LTETPFRPREKLLEKQRLFQSIQRHTYLKGPMDKITSVAIPIALAASSLYMIGTGIYNMS 61

Query: 61 HGIGKKE 67
          +GIGKKE
Sbjct: 62 NGIGKKE 68


>AT4G21105.2 | Symbols:  | cytochrome-c oxidases;electron carriers
          | chr4:11266273-11266866 FORWARD LENGTH=48
          Length = 48

 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 28/41 (68%), Positives = 34/41 (82%)

Query: 1  MSEAPFTPREKLFEKQKYFQNIQKHTYLKGRYDKITSVAIP 41
          ++E PF PREKL EKQ+ FQ+IQ+HTYLKG  DKITS+ IP
Sbjct: 2  LTETPFRPREKLLEKQRLFQSIQRHTYLKGPMDKITSLFIP 42