Miyakogusa Predicted Gene

Lj3g3v2994540.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2994540.1 Non Chatacterized Hit- tr|F1NT61|F1NT61_CHICK
Uncharacterized protein (Fragment) OS=Gallus gallus GN,36.36,0.13,no
description,NULL; HYPOTHETICAL PROTEIN CBG00902,NULL; F-BOX/LEUCINE
RICH REPEAT PROTEIN,NULL,TC72952.path1.1
         (121 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G67190.2 | Symbols:  | F-box/RNI-like superfamily protein | c...   146   3e-36
AT1G67190.1 | Symbols:  | F-box/RNI-like superfamily protein | c...   146   3e-36

>AT1G67190.2 | Symbols:  | F-box/RNI-like superfamily protein |
           chr1:25133054-25134313 FORWARD LENGTH=419
          Length = 419

 Score =  146 bits (369), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 65/109 (59%), Positives = 83/109 (76%)

Query: 13  TIASCFPHLNHLSLSYDVRYGVVHYGLLGAAYLENVVILELGWNVLNDLFSHWVEGLLKR 72
           +IA+ F HL HLSLSYD++ G  HY L G   LENV +LELGW V+ND+FS WVE LL+R
Sbjct: 311 SIAAGFSHLTHLSLSYDLKDGAAHYSLQGTTQLENVTVLELGWTVINDVFSIWVEELLRR 370

Query: 73  CPNLKKLVIHGEVSEAKSDEECKIFANFTRSMIQLMRRYTHVDPHFNFE 121
           CPNLKKL+I+G VSE K+  +C+I A FT S++QLMR+Y HV+  F +E
Sbjct: 371 CPNLKKLIIYGVVSETKTQGDCQILATFTWSIVQLMRKYIHVEVQFEYE 419


>AT1G67190.1 | Symbols:  | F-box/RNI-like superfamily protein |
           chr1:25133054-25134313 FORWARD LENGTH=419
          Length = 419

 Score =  146 bits (369), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 65/109 (59%), Positives = 83/109 (76%)

Query: 13  TIASCFPHLNHLSLSYDVRYGVVHYGLLGAAYLENVVILELGWNVLNDLFSHWVEGLLKR 72
           +IA+ F HL HLSLSYD++ G  HY L G   LENV +LELGW V+ND+FS WVE LL+R
Sbjct: 311 SIAAGFSHLTHLSLSYDLKDGAAHYSLQGTTQLENVTVLELGWTVINDVFSIWVEELLRR 370

Query: 73  CPNLKKLVIHGEVSEAKSDEECKIFANFTRSMIQLMRRYTHVDPHFNFE 121
           CPNLKKL+I+G VSE K+  +C+I A FT S++QLMR+Y HV+  F +E
Sbjct: 371 CPNLKKLIIYGVVSETKTQGDCQILATFTWSIVQLMRKYIHVEVQFEYE 419