Miyakogusa Predicted Gene

Lj3g3v2993390.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2993390.1 Non Chatacterized Hit- tr|B9SCV1|B9SCV1_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,69.23,0.000000000000003,Q6YZI4_ORYSA_Q6YZI4;,NULL;
seg,NULL,CUFF.45083.1
         (77 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G27730.1 | Symbols:  | copper ion binding | chr2:11820056-118...    67   2e-12

>AT2G27730.1 | Symbols:  | copper ion binding |
          chr2:11820056-11820867 REVERSE LENGTH=113
          Length = 113

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/51 (70%), Positives = 43/51 (84%), Gaps = 3/51 (5%)

Query: 1  MATRVAARFISRRPFSSGSGKILSEEEKAAENAYFKKVEQEKLEKVARQGP 51
          MATR A R +SRR FSSG  K+LSEEE+AAEN + KK+EQEKL+K+ARQGP
Sbjct: 1  MATRNALRIVSRR-FSSG--KVLSEEERAAENVFIKKMEQEKLQKLARQGP 48