Miyakogusa Predicted Gene

Lj3g3v2987100.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2987100.2 Non Chatacterized Hit- tr|I1P100|I1P100_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,38.46,3e-18,F-box domain,F-box domain, cyclin-like; F-box,F-box
domain, cyclin-like; SUBFAMILY NOT NAMED,NULL; F,CUFF.45067.2
         (194 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G27310.1 | Symbols:  | F-box family protein | chr2:11683954-1...   134   3e-32
AT3G44326.1 | Symbols:  | F-box family protein | chr3:16000933-1...   132   1e-31
AT2G36090.1 | Symbols:  | F-box family protein | chr2:15158631-1...    98   3e-21

>AT2G27310.1 | Symbols:  | F-box family protein |
           chr2:11683954-11684967 REVERSE LENGTH=337
          Length = 337

 Score =  134 bits (338), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 68/171 (39%), Positives = 95/171 (55%), Gaps = 10/171 (5%)

Query: 28  ITAVHPDIILTHILTRLDGXXXXXXXXXXXXXXXXCADEDLWQKICAATWPSLTAPTTSH 87
           I+ +H DII T ILTRLDG                C +E LWQ++   TWPS+  P    
Sbjct: 12  ISTLHSDIIQTQILTRLDGPTLASTATTSSYLQTLCTEEKLWQELSIDTWPSINDPRVVQ 71

Query: 88  VISTFPAGHRSIFSDAFPSLHHNHXXXXXXXXXXXXXXXXXISAVDIYYNGEPMFSRVHR 147
            IS+FP+G+RS F+D++P   H                   ISAVD+YY GE ++S+V  
Sbjct: 72  AISSFPSGYRSFFADSYPFTEHTW------QSEKHDPPTGLISAVDLYYRGEIIYSKVQE 125

Query: 148 TETEK---NWFLTSPLCVEMLEPNEVVPAPVRF-AGKYEKWMRHLEESLRL 194
            ETEK    WFL+SP  V++L+P E V   +R+  G YE W++ +EES++L
Sbjct: 126 METEKGKSGWFLSSPFRVDILDPKESVQTRIRYPGGDYEAWVKDMEESMKL 176


>AT3G44326.1 | Symbols:  | F-box family protein |
           chr3:16000933-16002024 REVERSE LENGTH=363
          Length = 363

 Score =  132 bits (333), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 70/169 (41%), Positives = 94/169 (55%), Gaps = 6/169 (3%)

Query: 28  ITAVHPDIILTHILTRLDGXXXXXXXXXXXXXXXXCADEDLWQKICAATWPSLTAPTTSH 87
           I AV  D++ ++ILTRLDG                C+DE LW++ C+ATWPS +      
Sbjct: 21  INAVSSDVLRSNILTRLDGSSLAALSCTCSNLNSFCSDESLWRQQCSATWPSTSDTRVQS 80

Query: 88  VISTFPAGHRSIFSDAFPSLHHNHXXXXXXXXXXXXXXXXXISAVDIYYNGEPMFSRVHR 147
           +ISTFP GHR+ FSD+FP L H+                  ISAVDI+Y  + +FSRVH 
Sbjct: 81  IISTFPDGHRTFFSDSFPFLEHD----VGINLPPSVDTSELISAVDIFYKDDVIFSRVHV 136

Query: 148 TETEKNWFLTSPLCVEMLEPNEVVPAPVRFAG--KYEKWMRHLEESLRL 194
           TET   WFL SP+ V+++EP E++P  V      K + W   LEE+L L
Sbjct: 137 TETVSGWFLCSPMRVDLVEPKELIPTRVLVTDQCKDDTWKSDLEENLSL 185


>AT2G36090.1 | Symbols:  | F-box family protein |
           chr2:15158631-15159584 FORWARD LENGTH=317
          Length = 317

 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 82/168 (48%), Gaps = 17/168 (10%)

Query: 27  FITAVHPDIILTHILTRLDGXXXXXXXXXXXXXXXXCADEDLWQKICAATWPSLTAPTTS 86
            I+ VH DII +HILTRLDG                 ++E LW KIC +TWPS +     
Sbjct: 16  LISTVHDDIIESHILTRLDGATLASVSCASSHLHHLASNEILWSKICRSTWPSCSG---- 71

Query: 87  HVISTFPAGHRSIFSDAFPSLHHNHXXXXXXXXXXXXXXXXXISAVDIYYNGEPMFSRVH 146
                   G RS FSDA+  +                     ISAVD++Y G+ +FSRV 
Sbjct: 72  --------GSRSFFSDAYSMVE-----TAGTVSDLDRPFPELISAVDLHYRGKLIFSRVV 118

Query: 147 RTETEKNWFLTSPLCVEMLEPNEVVPAPVRFAGKYEKWMRHLEESLRL 194
           +TET   WF +SPL +++++  + V  P++   + E   R LE+ L L
Sbjct: 119 KTETTTAWFKSSPLRIDLVDTKDTVATPIKRRQRTEDTCRDLEKDLTL 166