Miyakogusa Predicted Gene
- Lj3g3v2970750.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v2970750.1 tr|Q9FMS3|Q9FMS3_ARATH At5g22280 OS=Arabidopsis
thaliana GN=At5g22280/MWD9.6 PE=4 SV=1,52.04,2e-19,coiled-coil,NULL;
seg,NULL,CUFF.45037.1
(105 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G22280.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 80 2e-16
AT5G22280.2 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 72 6e-14
AT3G44280.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 63 5e-11
AT5G22280.3 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 46 4e-06
AT5G06265.3 | Symbols: | hyaluronan mediated motility receptor-... 46 5e-06
AT5G06265.2 | Symbols: | hyaluronan mediated motility receptor-... 46 5e-06
AT5G06265.1 | Symbols: | hyaluronan mediated motility receptor-... 46 5e-06
>AT5G22280.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G44280.1);
Has 82 Blast hits to 82 proteins in 13 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr5:7374211-7375112 REVERSE LENGTH=108
Length = 108
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 62/91 (68%), Gaps = 1/91 (1%)
Query: 1 MSRAMXXXXXXXXXXTTSQFEWKQQLGVDGDSNSSISKKHHRGSKEVESVKEKIILVQEQ 60
MSR + TSQFEW+Q L ++ D+ S+S+KH + +K E+VKEKIIL QE+
Sbjct: 1 MSRPIMLVFLLVILIVTSQFEWRQPL-LELDAAPSLSQKHQQIAKREEAVKEKIILSQER 59
Query: 61 NIRRLSELVRHLQEQLKLCRSNNGTKNGTES 91
+I+RL++LVR LQ QL+ C+ N T+N TE+
Sbjct: 60 HIQRLNDLVRSLQMQLQRCKGENETRNATET 90
>AT5G22280.2 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT3G44280.1); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
0; Other Eukaryotes - 2996 (source: NCBI BLink). |
chr5:7374211-7375538 REVERSE LENGTH=100
Length = 100
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 57/79 (72%), Gaps = 1/79 (1%)
Query: 20 FEWKQQLGVDGDSNSSISKKHHRGSKEVESVKEKIILVQEQNIRRLSELVRHLQEQLKLC 79
FEW+Q L ++ D+ S+S+KH + +K E+VKEKIIL QE++I+RL++LVR LQ QL+ C
Sbjct: 12 FEWRQPL-LELDAAPSLSQKHQQIAKREEAVKEKIILSQERHIQRLNDLVRSLQMQLQRC 70
Query: 80 RSNNGTKNGTESPKAERVF 98
+ N T+N TE+ + F
Sbjct: 71 KGENETRNATETSHNNKQF 89
>AT3G44280.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G22280.1);
Has 82 Blast hits to 82 proteins in 13 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr3:15968760-15970532 REVERSE LENGTH=108
Length = 108
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 61/98 (62%), Gaps = 1/98 (1%)
Query: 1 MSRAMXXXXXXXXXXTTSQFEWKQQLGVDGDSNSSISKKHHRGSKEVESVKEKIILVQEQ 60
MS+ + TSQFEW+Q L V+ D+ +S S+K + S E+VKEKII+ QE+
Sbjct: 1 MSKPVLLVCLLVILIVTSQFEWRQPL-VELDTATSSSQKQQQISDREEAVKEKIIISQER 59
Query: 61 NIRRLSELVRHLQEQLKLCRSNNGTKNGTESPKAERVF 98
+I+RL+ELVR LQ QL C+ N T+N T+S + F
Sbjct: 60 HIQRLNELVRSLQLQLLQCKGENETQNATKSYHINKQF 97
>AT5G22280.3 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages. | chr5:7374272-7375112
REVERSE LENGTH=136
Length = 136
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 1 MSRAMXXXXXXXXXXTTSQFEWKQQLGVDGDSNSSISKKHHRGSKEVESVKEKIILVQEQ 60
MSR + TSQFEW+Q L ++ D+ S+S+KH + +K E+VKEK+ LV++
Sbjct: 1 MSRPIMLVFLLVILIVTSQFEWRQPL-LELDAAPSLSQKHQQIAKREEAVKEKMRLVEKH 59
Query: 61 NIRRLSELVRH 71
+ L+ L H
Sbjct: 60 RLIGLATLKFH 70
>AT5G06265.3 | Symbols: | hyaluronan mediated motility
receptor-related | chr5:1906596-1907382 FORWARD
LENGTH=106
Length = 106
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 1 MSRAMXXXXXXXXXXTTSQFEWKQQLGVDGDSNSSI----SKKHHRGSKEVESVKEKIIL 56
M+R+ TSQFEW +Q+ + +++S K+ + ESV+ K IL
Sbjct: 1 MTRSWVLLFVLMFIVLTSQFEWNEQVENESETSSRPLILSDKEQQHIPQGKESVQVKKIL 60
Query: 57 VQEQNIRRLSELVRHLQEQLKLCRSNN 83
QE+ I++L+ELVR L+ QL CR+ N
Sbjct: 61 FQEKKIQKLNELVRDLRRQLLQCRNEN 87
>AT5G06265.2 | Symbols: | hyaluronan mediated motility
receptor-related | chr5:1906596-1907382 FORWARD
LENGTH=106
Length = 106
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 1 MSRAMXXXXXXXXXXTTSQFEWKQQLGVDGDSNSSI----SKKHHRGSKEVESVKEKIIL 56
M+R+ TSQFEW +Q+ + +++S K+ + ESV+ K IL
Sbjct: 1 MTRSWVLLFVLMFIVLTSQFEWNEQVENESETSSRPLILSDKEQQHIPQGKESVQVKKIL 60
Query: 57 VQEQNIRRLSELVRHLQEQLKLCRSNN 83
QE+ I++L+ELVR L+ QL CR+ N
Sbjct: 61 FQEKKIQKLNELVRDLRRQLLQCRNEN 87
>AT5G06265.1 | Symbols: | hyaluronan mediated motility
receptor-related | chr5:1906596-1907382 FORWARD
LENGTH=106
Length = 106
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 1 MSRAMXXXXXXXXXXTTSQFEWKQQLGVDGDSNSSI----SKKHHRGSKEVESVKEKIIL 56
M+R+ TSQFEW +Q+ + +++S K+ + ESV+ K IL
Sbjct: 1 MTRSWVLLFVLMFIVLTSQFEWNEQVENESETSSRPLILSDKEQQHIPQGKESVQVKKIL 60
Query: 57 VQEQNIRRLSELVRHLQEQLKLCRSNN 83
QE+ I++L+ELVR L+ QL CR+ N
Sbjct: 61 FQEKKIQKLNELVRDLRRQLLQCRNEN 87