Miyakogusa Predicted Gene
- Lj3g3v2949670.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v2949670.2 tr|G7JH96|G7JH96_MEDTR Transcription factor E2F
OS=Medicago truncatula GN=MTR_4g052000 PE=3 SV=1,79.53,0,E2F-DP
heterodimerization region,NULL; "Winged helix" DNA-binding
domain,NULL; seg,NULL; no descript,CUFF.45032.2
(293 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G22220.3 | Symbols: E2F1, E2FB, ATE2FB | E2F transcription fa... 301 3e-82
AT5G22220.2 | Symbols: E2F1, E2FB, ATE2FB | E2F transcription fa... 301 3e-82
AT2G36010.1 | Symbols: E2F3, ATE2FA | E2F transcription factor 3... 288 4e-78
AT2G36010.3 | Symbols: E2F3, ATE2FA | E2F transcription factor 3... 284 6e-77
AT1G47870.1 | Symbols: E2FC, ATE2F2, ATE2FC | winged-helix DNA-b... 200 8e-52
AT1G47870.2 | Symbols: ATE2F2 | winged-helix DNA-binding transcr... 200 8e-52
AT2G36010.2 | Symbols: E2F3, ATE2FA | E2F transcription factor 3... 197 7e-51
AT5G14960.1 | Symbols: DEL2, E2L1, E2FD | DP-E2F-like 2 | chr5:4... 68 6e-12
AT3G48160.2 | Symbols: DEL1, E2L3, E2FE | DP-E2F-like 1 | chr3:1... 64 9e-11
AT3G48160.1 | Symbols: DEL1, E2L3, E2FE | DP-E2F-like 1 | chr3:1... 64 1e-10
AT3G01330.1 | Symbols: DEL3, E2L2, E2FF | DP-E2F-like protein 3 ... 62 3e-10
>AT5G22220.3 | Symbols: E2F1, E2FB, ATE2FB | E2F transcription
factor 1 | chr5:7360749-7364120 FORWARD LENGTH=466
Length = 466
Score = 301 bits (771), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 174/291 (59%), Positives = 199/291 (68%), Gaps = 26/291 (8%)
Query: 16 QIMHSMKRQL---------PFVAAASGDYHRFTPDRRRN----PDQV-AEAIVVKTPQLK 61
Q S KRQL P VA G+YHRF R DQV ++AIV+K+ LK
Sbjct: 7 QQFPSSKRQLHPSLSSMKPPLVAP--GEYHRFDAAETRGGGAVADQVVSDAIVIKS-TLK 63
Query: 62 RKNEAADFEADSGDRMNPGSTETAISPFQTPLXXXXXXXXXXXRLTKCIKSATQTPGPNI 121
RK + + + + +N G QTP+ R K KS T G N
Sbjct: 64 RKTDLVN-QIVEVNELNTGV-------LQTPVSGKGGKAKKTSRSAKSNKSGTLASGSNA 115
Query: 122 GSPSANNLTPAGSCRYDSSLGLLTKKFINLIKQAEDGMLDLNKAAETLEVQKRRIYDITN 181
GSP NN AG+CRYDSSLGLLTKKFINLIKQAEDG+LDLNKAA+TLEVQKRRIYDITN
Sbjct: 116 GSP-GNNFAQAGTCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITN 174
Query: 182 VLEGIGLIEKKLKNRIQWKGLDVSRPGQGDDSFGSLQTEVENLTIEERQLDEQIREMQER 241
VLEGIGLIEK LKNRIQWKGLDVS+PG+ +S +LQ EV+NL EE +LD+QIRE QER
Sbjct: 175 VLEGIGLIEKTLKNRIQWKGLDVSKPGETIESIANLQDEVQNLAAEEARLDDQIRESQER 234
Query: 242 LRDLSEDENNEKLLFVTEEDIKKLPGFQNETLIAIKAPHGTTLEVPDPDEV 292
L LSEDENN++LLFVTE DIK LP FQN+TLIA+KAPHGTTLEVPDPDE
Sbjct: 235 LTSLSEDENNKRLLFVTENDIKNLPCFQNKTLIAVKAPHGTTLEVPDPDEA 285
>AT5G22220.2 | Symbols: E2F1, E2FB, ATE2FB | E2F transcription
factor 1 | chr5:7360749-7364120 FORWARD LENGTH=469
Length = 469
Score = 301 bits (771), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 174/291 (59%), Positives = 199/291 (68%), Gaps = 26/291 (8%)
Query: 16 QIMHSMKRQL---------PFVAAASGDYHRFTPDRRRN----PDQV-AEAIVVKTPQLK 61
Q S KRQL P VA G+YHRF R DQV ++AIV+K+ LK
Sbjct: 7 QQFPSSKRQLHPSLSSMKPPLVAP--GEYHRFDAAETRGGGAVADQVVSDAIVIKS-TLK 63
Query: 62 RKNEAADFEADSGDRMNPGSTETAISPFQTPLXXXXXXXXXXXRLTKCIKSATQTPGPNI 121
RK + + + + +N G QTP+ R K KS T G N
Sbjct: 64 RKTDLVN-QIVEVNELNTGV-------LQTPVSGKGGKAKKTSRSAKSNKSGTLASGSNA 115
Query: 122 GSPSANNLTPAGSCRYDSSLGLLTKKFINLIKQAEDGMLDLNKAAETLEVQKRRIYDITN 181
GSP NN AG+CRYDSSLGLLTKKFINLIKQAEDG+LDLNKAA+TLEVQKRRIYDITN
Sbjct: 116 GSP-GNNFAQAGTCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITN 174
Query: 182 VLEGIGLIEKKLKNRIQWKGLDVSRPGQGDDSFGSLQTEVENLTIEERQLDEQIREMQER 241
VLEGIGLIEK LKNRIQWKGLDVS+PG+ +S +LQ EV+NL EE +LD+QIRE QER
Sbjct: 175 VLEGIGLIEKTLKNRIQWKGLDVSKPGETIESIANLQDEVQNLAAEEARLDDQIRESQER 234
Query: 242 LRDLSEDENNEKLLFVTEEDIKKLPGFQNETLIAIKAPHGTTLEVPDPDEV 292
L LSEDENN++LLFVTE DIK LP FQN+TLIA+KAPHGTTLEVPDPDE
Sbjct: 235 LTSLSEDENNKRLLFVTENDIKNLPCFQNKTLIAVKAPHGTTLEVPDPDEA 285
>AT2G36010.1 | Symbols: E2F3, ATE2FA | E2F transcription factor 3 |
chr2:15119688-15122893 FORWARD LENGTH=483
Length = 483
Score = 288 bits (736), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 166/295 (56%), Positives = 191/295 (64%), Gaps = 25/295 (8%)
Query: 17 IMHSMKRQLPFVAA-----ASGDYHRFTPDRRRN------------PDQVAEAIVVKTPQ 59
++ ++R L F + S DYHRF P N D+ +A+VV++P
Sbjct: 34 VIPPIRRHLAFASTKPPFHPSDDYHRFNPSSLSNNNDRSFVHGCGVVDREEDAVVVRSPS 93
Query: 60 LKRKNEAADFEADSGDRM-NPGSTETAISPFQTPLXXXXXXXXXXXRLTKCIKSATQTP- 117
KRK A S + + G T SP QTP K KS QTP
Sbjct: 94 RKRKATMDMVVAPSNNGFTSSGFTNIPSSPCQTPRKGGRVNIKSK---AKGNKSTPQTPI 150
Query: 118 GPNIGSPSANNLTPAGSCRYDSSLGLLTKKFINLIKQAEDGMLDLNKAAETLEVQKRRIY 177
N GSP LTP+GSCRYDSSLGLLTKKF+NLIKQA+DGMLDLNKAAETLEVQKRRIY
Sbjct: 151 STNAGSPIT--LTPSGSCRYDSSLGLLTKKFVNLIKQAKDGMLDLNKAAETLEVQKRRIY 208
Query: 178 DITNVLEGIGLIEKKLKNRIQWKGLDVSRPGQGDDSFGSLQTEVENLTIEERQLDEQIRE 237
DITNVLEGI LIEK KNRI WKG+D PG D LQ E+ENL +EE+ LD QIR+
Sbjct: 209 DITNVLEGIDLIEKPFKNRILWKGVDAC-PGDEDADVSVLQAEIENLALEEQALDNQIRQ 267
Query: 238 MQERLRDLSEDENNEKLLFVTEEDIKKLPGFQNETLIAIKAPHGTTLEVPDPDEV 292
+ERLRDLSE+E N+K LFVTEEDIK LPGFQN+TLIA+KAPHGTTLEVPDPDE
Sbjct: 268 TEERLRDLSENEKNQKWLFVTEEDIKSLPGFQNQTLIAVKAPHGTTLEVPDPDEA 322
>AT2G36010.3 | Symbols: E2F3, ATE2FA | E2F transcription factor 3 |
chr2:15119688-15122893 FORWARD LENGTH=485
Length = 485
Score = 284 bits (726), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 167/297 (56%), Positives = 192/297 (64%), Gaps = 27/297 (9%)
Query: 17 IMHSMKRQLPFVAA-----ASGDYHRFTPDRRRN------------PDQVAEAIVVKTPQ 59
++ ++R L F + S DYHRF P N D+ +A+VV++P
Sbjct: 34 VIPPIRRHLAFASTKPPFHPSDDYHRFNPSSLSNNNDRSFVHGCGVVDREEDAVVVRSPS 93
Query: 60 LKRKNEAADFEADSGDRM-NPGSTETAISPFQTPLXXXXXXXXXXXRLTKCIKSATQTP- 117
KRK A S + + G T SP QTP K KS QTP
Sbjct: 94 RKRKATMDMVVAPSNNGFTSSGFTNIPSSPCQTPRKGGRVNIKSK---AKGNKSTPQTPI 150
Query: 118 GPNIGSPSANNLTPAGSCRYDSSLGLLTKKFINLIKQAEDGMLDLNKAAETLEVQKRRIY 177
N GSP LTP+GSCRYDSSLGLLTKKF+NLIKQA+DGMLDLNKAAETLEVQKRRIY
Sbjct: 151 STNAGSPIT--LTPSGSCRYDSSLGLLTKKFVNLIKQAKDGMLDLNKAAETLEVQKRRIY 208
Query: 178 DITNVLEGIGLIEKKLKNRIQWKGLDVSRPG--QGDDSFGSLQTEVENLTIEERQLDEQI 235
DITNVLEGI LIEK KNRI WKG+D PG D S LQ E+ENL +EE+ LD QI
Sbjct: 209 DITNVLEGIDLIEKPFKNRILWKGVDAC-PGDEDADVSVLQLQAEIENLALEEQALDNQI 267
Query: 236 REMQERLRDLSEDENNEKLLFVTEEDIKKLPGFQNETLIAIKAPHGTTLEVPDPDEV 292
R+ +ERLRDLSE+E N+K LFVTEEDIK LPGFQN+TLIA+KAPHGTTLEVPDPDE
Sbjct: 268 RQTEERLRDLSENEKNQKWLFVTEEDIKSLPGFQNQTLIAVKAPHGTTLEVPDPDEA 324
>AT1G47870.1 | Symbols: E2FC, ATE2F2, ATE2FC | winged-helix
DNA-binding transcription factor family protein |
chr1:17634937-17637557 FORWARD LENGTH=396
Length = 396
Score = 200 bits (509), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 102/160 (63%), Positives = 121/160 (75%), Gaps = 4/160 (2%)
Query: 135 CRYDSSLGLLTKKFINLIKQAEDGMLDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK 194
CRYDSSLGLLTKKF+ LI++AEDG LDLN A LEVQKRRIYDITNVLEGIGLIEK K
Sbjct: 154 CRYDSSLGLLTKKFVKLIQEAEDGTLDLNYCAVVLEVQKRRIYDITNVLEGIGLIEKTTK 213
Query: 195 NRIQWKGLDVSRPGQGD--DSFGSLQTEVENLTIEERQLDEQIREMQERLRDLSEDENNE 252
N I+WKG D GQ D D L++EVE++ EE +LD+ IRE QE LR L ED+
Sbjct: 214 NHIRWKGAD--NLGQKDLGDQISRLKSEVESMQSEESRLDDLIRERQEALRSLEEDDYCR 271
Query: 253 KLLFVTEEDIKKLPGFQNETLIAIKAPHGTTLEVPDPDEV 292
+ +F+TEEDI LP FQN+TL+AIKAP + +EVPDPDE+
Sbjct: 272 RYMFMTEEDITSLPRFQNQTLLAIKAPTASYIEVPDPDEM 311
>AT1G47870.2 | Symbols: ATE2F2 | winged-helix DNA-binding
transcription factor family protein |
chr1:17634937-17637557 FORWARD LENGTH=395
Length = 395
Score = 200 bits (509), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 102/160 (63%), Positives = 121/160 (75%), Gaps = 4/160 (2%)
Query: 135 CRYDSSLGLLTKKFINLIKQAEDGMLDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK 194
CRYDSSLGLLTKKF+ LI++AEDG LDLN A LEVQKRRIYDITNVLEGIGLIEK K
Sbjct: 153 CRYDSSLGLLTKKFVKLIQEAEDGTLDLNYCAVVLEVQKRRIYDITNVLEGIGLIEKTTK 212
Query: 195 NRIQWKGLDVSRPGQGD--DSFGSLQTEVENLTIEERQLDEQIREMQERLRDLSEDENNE 252
N I+WKG D GQ D D L++EVE++ EE +LD+ IRE QE LR L ED+
Sbjct: 213 NHIRWKGAD--NLGQKDLGDQISRLKSEVESMQSEESRLDDLIRERQEALRSLEEDDYCR 270
Query: 253 KLLFVTEEDIKKLPGFQNETLIAIKAPHGTTLEVPDPDEV 292
+ +F+TEEDI LP FQN+TL+AIKAP + +EVPDPDE+
Sbjct: 271 RYMFMTEEDITSLPRFQNQTLLAIKAPTASYIEVPDPDEM 310
>AT2G36010.2 | Symbols: E2F3, ATE2FA | E2F transcription factor 3 |
chr2:15119688-15122893 FORWARD LENGTH=514
Length = 514
Score = 197 bits (501), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 105/151 (69%), Positives = 113/151 (74%), Gaps = 20/151 (13%)
Query: 143 LLTKKFINLIKQAEDGMLDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGL 202
LLTKKF+NLIKQA+DGMLDLNKAAETLEVQKRRIYDITNVLEGI LIEK KNRI WKG+
Sbjct: 220 LLTKKFVNLIKQAKDGMLDLNKAAETLEVQKRRIYDITNVLEGIDLIEKPFKNRILWKGV 279
Query: 203 DVSRPG--QGDDSFGSLQTEVENLTIEERQLDEQIREMQERLRDLSEDENNEKLLFVTEE 260
D PG D S LQ E+ENL +EE+ LD QIR LFVTEE
Sbjct: 280 DAC-PGDEDADVSVLQLQAEIENLALEEQALDNQIR-----------------WLFVTEE 321
Query: 261 DIKKLPGFQNETLIAIKAPHGTTLEVPDPDE 291
DIK LPGFQN+TLIA+KAPHGTTLEVPDPDE
Sbjct: 322 DIKSLPGFQNQTLIAVKAPHGTTLEVPDPDE 352
>AT5G14960.1 | Symbols: DEL2, E2L1, E2FD | DP-E2F-like 2 |
chr5:4843966-4846373 FORWARD LENGTH=359
Length = 359
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 44/74 (59%)
Query: 129 LTPAGSCRYDSSLGLLTKKFINLIKQAEDGMLDLNKAAETLEVQKRRIYDITNVLEGIGL 188
L P R D SLG+L F+ L + + + L+ AA L V++RRIYD+ N+LE IGL
Sbjct: 6 LAPQVYSRKDKSLGVLVANFLTLYNRPDVDLFGLDDAAAKLGVERRRIYDVVNILESIGL 65
Query: 189 IEKKLKNRIQWKGL 202
+ + KN+ WKG
Sbjct: 66 VARSGKNQYSWKGF 79
>AT3G48160.2 | Symbols: DEL1, E2L3, E2FE | DP-E2F-like 1 |
chr3:17783641-17785846 FORWARD LENGTH=403
Length = 403
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 42/68 (61%)
Query: 135 CRYDSSLGLLTKKFINLIKQAEDGMLDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK 194
R SLGLL F+ L + M+ L+ AA L V++RRIYDI NVLE +G++ ++ K
Sbjct: 33 SRKQKSLGLLCTNFLALYNREGIEMVGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAK 92
Query: 195 NRIQWKGL 202
N+ WKG
Sbjct: 93 NQYTWKGF 100
>AT3G48160.1 | Symbols: DEL1, E2L3, E2FE | DP-E2F-like 1 |
chr3:17783641-17785688 FORWARD LENGTH=379
Length = 379
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 42/68 (61%)
Query: 135 CRYDSSLGLLTKKFINLIKQAEDGMLDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK 194
R SLGLL F+ L + M+ L+ AA L V++RRIYDI NVLE +G++ ++ K
Sbjct: 33 SRKQKSLGLLCTNFLALYNREGIEMVGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAK 92
Query: 195 NRIQWKGL 202
N+ WKG
Sbjct: 93 NQYTWKGF 100
>AT3G01330.1 | Symbols: DEL3, E2L2, E2FF | DP-E2F-like protein 3 |
chr3:124596-126805 REVERSE LENGTH=354
Length = 354
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 44/67 (65%)
Query: 136 RYDSSLGLLTKKFINLIKQAEDGMLDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 195
R + SLG+L F+ L + + ++ L+ AA L V++RRIYD+ N+LE IG++ ++ KN
Sbjct: 21 RKEKSLGVLVSNFLRLYNRDDVDLIGLDDAAGQLGVERRRIYDVVNILESIGIVARRGKN 80
Query: 196 RIQWKGL 202
+ WKG
Sbjct: 81 QYSWKGF 87