Miyakogusa Predicted Gene

Lj3g3v2949660.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2949660.1 tr|G7JH90|G7JH90_MEDTR 5'-3' exoribonuclease
OS=Medicago truncatula GN=MTR_4g051920 PE=4 SV=1,57.54,0,5'->3'
EXORIBONUCLEASE,NULL,CUFF.45031.1
         (431 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G42540.1 | Symbols: XRN2, AtXRN2 | exoribonuclease 2 | chr5:1...   263   1e-70
AT5G42540.2 | Symbols: XRN2 | exoribonuclease 2 | chr5:17007513-...   258   5e-69
AT1G75660.1 | Symbols: XRN3, AtXRN3 | 5'-3' exoribonuclease 3 | ...   254   1e-67
AT1G54490.1 | Symbols: AIN1, EIN5, XRN4, ATXRN4 | exoribonucleas...   219   3e-57

>AT5G42540.1 | Symbols: XRN2, AtXRN2 | exoribonuclease 2 |
           chr5:17007513-17014534 FORWARD LENGTH=1012
          Length = 1012

 Score =  263 bits (673), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 153/398 (38%), Positives = 212/398 (53%), Gaps = 43/398 (10%)

Query: 2   KDKGDLFKSGEFRIDKIKLGTAGYKQRYYKEKFSVEGSIDFEKKRKDVVEKYTEGLLWVL 61
           +DKGD F+SG    DK+KL   G+++RYY+EKF+ +   + E+ R+DVV KYTEGL W++
Sbjct: 507 RDKGDGFRSGNGEQDKVKLNKVGWRERYYEEKFAAKSVEEMEQIRRDVVLKYTEGLCWIM 566

Query: 62  QYYFSGVASWSWFYPYHYGPFASDLKGMGQVKANFEKGVPFSPFDQLLSVLPPRSAYALP 121
            YY+ GV SW+WFYPYHY PFASDLKG+ ++   FE G PF PF+QLL+VLP  SA+ALP
Sbjct: 567 HYYYHGVCSWNWFYPYHYAPFASDLKGLEKLDIKFELGSPFKPFNQLLAVLPSASAHALP 626

Query: 122 KSYSKLMIDEDSKILHWYPQDFEVDTEGKRYMWQAICKLPWINERELLSETREIQNGLSQ 181
           + Y  LM + DS I  +YP DFE+D  GKRY WQ I KLP++ E+ LL    +++  L+ 
Sbjct: 627 ECYRSLMTNPDSPIADFYPADFEIDMNGKRYSWQGISKLPFVEEKRLLEAAAQVEKSLTN 686

Query: 182 NEKIRNSVKVDSLFVRSSSNLSTKICSLSTDNNQ----------SKLETNISDRIGGIIS 231
            E  RNS   D LFV +S  L   I SL++  N            K++  +SD + G I+
Sbjct: 687 EEIRRNSALFDMLFVVASHPLGELIRSLNSRTNNLSNEERATIIEKIDPGLSDGMNGYIA 746

Query: 232 LCLEDVDVERPNLGMEICDKKQEDHALCVYYELPAGGSSTTMHHLLSGVNIPTKTIYESE 291
            C  D         +E  +    +  +C  Y+LP     + + H +  + IP KTI   +
Sbjct: 747 SCGGDSQPSCFCSTVEGMEDVLTNQVICAIYKLPEDIRGSEITHQIPRLAIPKKTISLVD 806

Query: 292 IKE-TVLWHEKQMYQTHNRFERSIASSNATTPQNRRSFSLNAPPEVI----YKGAGVGWG 346
           +K   +LWHE                        RR     APP+VI    Y   G   G
Sbjct: 807 LKSGGLLWHEDG--------------------DKRR-----APPKVIKIKRYNPEGSISG 841

Query: 347 SGRGKPSNTPTMQRLNTM---TNERVSPSLSPNHHHQS 381
              GK S+   +Q +N      N    P+L PN   Q+
Sbjct: 842 GRLGKASHRLVLQTINAQPDYMNINSEPALCPNTVFQN 879


>AT5G42540.2 | Symbols: XRN2 | exoribonuclease 2 |
           chr5:17007513-17014534 FORWARD LENGTH=1023
          Length = 1023

 Score =  258 bits (659), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 151/409 (36%), Positives = 215/409 (52%), Gaps = 54/409 (13%)

Query: 2   KDKGDLFKSGEFRIDKIKLGTAGYKQRYYKEKFSVEGSIDFEKKRKDVVEKYTEGLLWVL 61
           +DKGD F+SG    DK+KL   G+++RYY+EKF+ +   + E+ R+DVV KYTEGL W++
Sbjct: 507 RDKGDGFRSGNGEQDKVKLNKVGWRERYYEEKFAAKSVEEMEQIRRDVVLKYTEGLCWIM 566

Query: 62  QYYFSGVASWSWFYPYHYGPFASDLKGMGQVKANFEKGVPFSPFDQLLSVLPPRSAYALP 121
            YY+ GV SW+WFYPYHY PFASDLKG+ ++   FE G PF PF+QLL+VLP  SA+ALP
Sbjct: 567 HYYYHGVCSWNWFYPYHYAPFASDLKGLEKLDIKFELGSPFKPFNQLLAVLPSASAHALP 626

Query: 122 KSYSKLMIDEDSKILHWYPQDFEVDTEGKRYMWQAICKLPWINERELLSETREIQNGLSQ 181
           + Y  LM + DS I  +YP DFE+D  GKRY WQ I KLP++ E+ LL    +++  L+ 
Sbjct: 627 ECYRSLMTNPDSPIADFYPADFEIDMNGKRYSWQGISKLPFVEEKRLLEAAAQVEKSLTN 686

Query: 182 NEKIRNSVKVDSLFVRSSSNLSTKICSLSTDNNQ----------SKLETNISDRIGGIIS 231
            E  RNS   D LFV +S  L   I SL++  N            K++  +S+ I   + 
Sbjct: 687 EEIRRNSALFDMLFVVASHPLGELIRSLNSRTNNLSNEERATIIEKIDPGLSEHIQKFLD 746

Query: 232 LCLEDVDVERPNLG-----------MEICDKKQEDHALCVYYELPAGGSSTTMHHLLSGV 280
           +C + ++    + G           +E  +    +  +C  Y+LP     + + H +  +
Sbjct: 747 VCSDGMNGYIASCGGDSQPSCFCSTVEGMEDVLTNQVICAIYKLPEDIRGSEITHQIPRL 806

Query: 281 NIPTKTIYESEIKE-TVLWHEKQMYQTHNRFERSIASSNATTPQNRRSFSLNAPPEVI-- 337
            IP KTI   ++K   +LWHE                        RR     APP+VI  
Sbjct: 807 AIPKKTISLVDLKSGGLLWHEDG--------------------DKRR-----APPKVIKI 841

Query: 338 --YKGAGVGWGSGRGKPSNTPTMQRLNTM---TNERVSPSLSPNHHHQS 381
             Y   G   G   GK S+   +Q +N      N    P+L PN   Q+
Sbjct: 842 KRYNPEGSISGGRLGKASHRLVLQTINAQPDYMNINSEPALCPNTVFQN 890


>AT1G75660.1 | Symbols: XRN3, AtXRN3 | 5'-3' exoribonuclease 3 |
           chr1:28408289-28414825 FORWARD LENGTH=1020
          Length = 1020

 Score =  254 bits (648), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 133/311 (42%), Positives = 177/311 (56%), Gaps = 13/311 (4%)

Query: 1   MKDKGDLFKSGEFRIDKIKLGTAGYKQRYYKEKFSVEGSIDFEKKRKDVVEKYTEGLLWV 60
           +++K D F S     DK+KLG  G+++RYY+EKFSV    + E+ RKDVV KYTEGL WV
Sbjct: 514 IREKSDAFNSDTTEEDKVKLGQPGWRERYYEEKFSVVTPEEMERVRKDVVLKYTEGLCWV 573

Query: 61  LQYYFSGVASWSWFYPYHYGPFASDLKGMGQVKANFEKGVPFSPFDQLLSVLPPRSAYAL 120
           + YY  GV SW WFYPYHY PFASDLK +G++   FE G PF PF+QLL V P  S++AL
Sbjct: 574 MHYYMEGVCSWQWFYPYHYAPFASDLKDLGEMDIKFELGTPFKPFNQLLGVFPAASSHAL 633

Query: 121 PKSYSKLMIDEDSKILHWYPQDFEVDTEGKRYMWQAICKLPWINERELLSETREIQNGLS 180
           P+ Y  LM D +S I+ +YP DFEVD  GKR+ WQ I KLP+I+ER LL    E++  L+
Sbjct: 634 PERYRTLMTDPNSPIIDFYPTDFEVDMNGKRFSWQGIAKLPFIDERRLLEAVSEVEFTLT 693

Query: 181 QNEKIRNSVKVDSLFVRSSSNLSTKICSLSTDNNQ----------SKLETNISDRIGGII 230
             EK RNS   D LF+ +S  L+  + SL     Q           K++  +SD + G +
Sbjct: 694 DEEKRRNSRMCDMLFIATSHRLAELVFSLDNHCRQLSARERVDFKVKIKPKLSDGMNGYL 753

Query: 231 SLCLEDVDVERPNLGMEICDKKQEDHALCVYYELPAGGSSTTMHHLLSGVNIPTKTIYES 290
           + C  +         ME  +    +  +C  Y LP      T      GV  P KT+   
Sbjct: 754 TPCSGETHPPVFRSPMEGMEDILTNQVICCIYRLPDAHEHIT--RPPPGVIFPKKTVDIG 811

Query: 291 EIK-ETVLWHE 300
           ++K    LWHE
Sbjct: 812 DLKPPPALWHE 822


>AT1G54490.1 | Symbols: AIN1, EIN5, XRN4, ATXRN4 | exoribonuclease 4
           | chr1:20350300-20356650 FORWARD LENGTH=947
          Length = 947

 Score =  219 bits (558), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 124/297 (41%), Positives = 165/297 (55%), Gaps = 17/297 (5%)

Query: 16  DKIKLGTAGYKQRYYKEKFSVEGSIDFEKKRKDVVEKYTEGLLWVLQYYFSGVASWSWFY 75
           DKIKLG  GYK+RYY EKFS     + E+ ++D+V KY EGL WV +YY+ GV SW WFY
Sbjct: 435 DKIKLGEPGYKERYYAEKFSTTNPEETEQIKQDMVLKYVEGLCWVCRYYYQGVCSWQWFY 494

Query: 76  PYHYGPFASDLKGMGQVKANFEKGVPFSPFDQLLSVLPPRSAYALPKSYSKLMIDEDSKI 135
           PYHY PFASDLK +  ++  F  G PF PFDQL+  LP  S+ ALP  Y KLM D  S I
Sbjct: 495 PYHYAPFASDLKNLPDLEITFFIGEPFKPFDQLMGTLPAASSNALPGEYRKLMTDPSSPI 554

Query: 136 LHWYPQDFEVDTEGKRYMWQAICKLPWINERELLSETREIQNGLSQNEKIRNSVKVDSLF 195
           L +YP DFE+D  GKR+ WQ I KLP+I E+ LL+ TR+++  L+  E+ RNSV +D L+
Sbjct: 555 LKFYPADFELDMNGKRFAWQGIAKLPFIEEKLLLAATRKLEETLTVEEQQRNSVMLDLLY 614

Query: 196 VRSSSNLSTKICSLSTDNNQSK--------LETNISDRIGGIISLCLED---VDVERPNL 244
           V  +  L  +I                   ++ N S  + G +     +     V+ P  
Sbjct: 615 VHPAHPLGQRILQYYHFYQHMPPHECLPWMIDPNSSQGMNGFLWFSERNGFQTRVDSPVN 674

Query: 245 GMEICDKKQEDHALCVYYELPAGGSSTTMHHLLSGVNIPTKTIYESEIKE-TVLWHE 300
           G+      +++ AL V Y  PA  S  +      G  IP K +   +IK    LWHE
Sbjct: 675 GLPCI---EQNRALNVTYLCPAKHSHIS--EPPRGAIIPDKILTSVDIKPFPPLWHE 726