Miyakogusa Predicted Gene

Lj3g3v2948520.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2948520.1 CUFF.45632.1
         (636 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G27230.2 | Symbols: LHW | transcription factor-related | chr2...   147   3e-35
AT2G27230.1 | Symbols: LHW | transcription factor-related | chr2...   147   3e-35
AT1G64625.1 | Symbols:  | Serine/threonine-protein kinase WNK (W...    77   3e-14
AT1G64625.3 | Symbols:  | Serine/threonine-protein kinase WNK (W...    77   3e-14
AT1G64625.2 | Symbols:  | Serine/threonine-protein kinase WNK (W...    77   4e-14
AT1G06150.2 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    75   1e-13
AT1G06150.1 | Symbols: EMB1444 | basic helix-loop-helix (bHLH) D...    75   2e-13
AT2G31280.1 | Symbols: CPUORF7 | conserved peptide upstream open...    74   2e-13
AT2G31280.3 | Symbols: CPUORF7 | conserved peptide upstream open...    74   2e-13
AT2G31280.2 | Symbols: CPUORF7 | conserved peptide upstream open...    74   3e-13

>AT2G27230.2 | Symbols: LHW | transcription factor-related |
           chr2:11650895-11653840 FORWARD LENGTH=650
          Length = 650

 Score =  147 bits (370), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 103/250 (41%), Positives = 129/250 (51%), Gaps = 44/250 (17%)

Query: 388 DDLFDVFGVDLKRKLLNGNWNRSHAHESDANAKNLDKKAPCVDFPGTGPDNSYSGNEAIS 447
           DDLFD+ G+D K K  + +W  S         +  D +          P+   SG E   
Sbjct: 295 DDLFDMLGLDDKNKGCDNSWGVSQMRTEVLTRELSDFRI----IQEMDPEFGSSGYEL-- 348

Query: 448 DSGIFCGTGTDHLLDAVVSRAQSAAKQNSDETS--CKTTFTRISTATSVPSPSCKQVMSD 505
                  +GTDHLLDAVVS A S+ KQ SDETS  CKTT T++S  +SV +PS       
Sbjct: 349 -------SGTDHLLDAVVSGACSSTKQISDETSESCKTTLTKVSN-SSVTTPS------H 394

Query: 506 HVAQGALFDFPKMGTKTGAVEASSLRSGCSKGDAGNCSQSTSIYGSQLSSWVDDSSNVKR 565
              QG+     K G   G                      +S+YGSQ+SSWV+ + ++KR
Sbjct: 395 SSPQGSQLFEKKHGQPLGP---------------------SSVYGSQISSWVEQAHSLKR 433

Query: 566 ENSASTGYSKRPDEAGKTNRKRLKPGENPRPRPKDRQMIQDRVKELREIVPNGAKVCSSS 625
           E S     +K        NRKRLKPGENPRPRPKDRQMIQDRVKELREI+PNGAK    +
Sbjct: 434 EGSPRM-VNKNETAKPANNRKRLKPGENPRPRPKDRQMIQDRVKELREIIPNGAKCSIDA 492

Query: 626 YIFYVNQHFL 635
            +    +H L
Sbjct: 493 LLERTIKHML 502



 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/50 (60%), Positives = 33/50 (66%), Gaps = 7/50 (14%)

Query: 1   MENMRFVNDVKSLILQLGCVPGALLSEDYSPKLSNERLNGPVTDCVPVSV 50
           MEN+ FVNDVK LILQLGCVPGALLSE+Y       R   P  D + V V
Sbjct: 147 MENLGFVNDVKGLILQLGCVPGALLSENY-------RTYEPAADFIGVPV 189


>AT2G27230.1 | Symbols: LHW | transcription factor-related |
           chr2:11650895-11653840 FORWARD LENGTH=650
          Length = 650

 Score =  147 bits (370), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 103/250 (41%), Positives = 129/250 (51%), Gaps = 44/250 (17%)

Query: 388 DDLFDVFGVDLKRKLLNGNWNRSHAHESDANAKNLDKKAPCVDFPGTGPDNSYSGNEAIS 447
           DDLFD+ G+D K K  + +W  S         +  D +          P+   SG E   
Sbjct: 295 DDLFDMLGLDDKNKGCDNSWGVSQMRTEVLTRELSDFRI----IQEMDPEFGSSGYEL-- 348

Query: 448 DSGIFCGTGTDHLLDAVVSRAQSAAKQNSDETS--CKTTFTRISTATSVPSPSCKQVMSD 505
                  +GTDHLLDAVVS A S+ KQ SDETS  CKTT T++S  +SV +PS       
Sbjct: 349 -------SGTDHLLDAVVSGACSSTKQISDETSESCKTTLTKVSN-SSVTTPS------H 394

Query: 506 HVAQGALFDFPKMGTKTGAVEASSLRSGCSKGDAGNCSQSTSIYGSQLSSWVDDSSNVKR 565
              QG+     K G   G                      +S+YGSQ+SSWV+ + ++KR
Sbjct: 395 SSPQGSQLFEKKHGQPLGP---------------------SSVYGSQISSWVEQAHSLKR 433

Query: 566 ENSASTGYSKRPDEAGKTNRKRLKPGENPRPRPKDRQMIQDRVKELREIVPNGAKVCSSS 625
           E S     +K        NRKRLKPGENPRPRPKDRQMIQDRVKELREI+PNGAK    +
Sbjct: 434 EGSPRM-VNKNETAKPANNRKRLKPGENPRPRPKDRQMIQDRVKELREIIPNGAKCSIDA 492

Query: 626 YIFYVNQHFL 635
            +    +H L
Sbjct: 493 LLERTIKHML 502



 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/50 (60%), Positives = 33/50 (66%), Gaps = 7/50 (14%)

Query: 1   MENMRFVNDVKSLILQLGCVPGALLSEDYSPKLSNERLNGPVTDCVPVSV 50
           MEN+ FVNDVK LILQLGCVPGALLSE+Y       R   P  D + V V
Sbjct: 147 MENLGFVNDVKGLILQLGCVPGALLSENY-------RTYEPAADFIGVPV 189


>AT1G64625.1 | Symbols:  | Serine/threonine-protein kinase WNK (With
           No Lysine)-related | chr1:24016878-24019181 FORWARD
           LENGTH=527
          Length = 527

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 48/70 (68%), Gaps = 7/70 (10%)

Query: 554 SSWVDDSSNVKRENSASTGYSKRPDEAGKTNRKRLKPGENPRPRPKDRQMIQDRVKELRE 613
           S W+DD      E S+  G  K+P E G   +KR K GE+ RPRPKDRQMIQDR+KELR 
Sbjct: 326 SLWIDDD-----ERSSIGGNWKKPHEEG-VKKKRAKAGESRRPRPKDRQMIQDRIKELRG 379

Query: 614 IVPNGAKVCS 623
           ++PNGAK CS
Sbjct: 380 MIPNGAK-CS 388


>AT1G64625.3 | Symbols:  | Serine/threonine-protein kinase WNK (With
           No Lysine)-related | chr1:24016878-24019181 FORWARD
           LENGTH=503
          Length = 503

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 48/70 (68%), Gaps = 7/70 (10%)

Query: 554 SSWVDDSSNVKRENSASTGYSKRPDEAGKTNRKRLKPGENPRPRPKDRQMIQDRVKELRE 613
           S W+DD      E S+  G  K+P E G   +KR K GE+ RPRPKDRQMIQDR+KELR 
Sbjct: 302 SLWIDDD-----ERSSIGGNWKKPHEEG-VKKKRAKAGESRRPRPKDRQMIQDRIKELRG 355

Query: 614 IVPNGAKVCS 623
           ++PNGAK CS
Sbjct: 356 MIPNGAK-CS 364


>AT1G64625.2 | Symbols:  | Serine/threonine-protein kinase WNK (With
           No Lysine)-related | chr1:24016878-24019181 FORWARD
           LENGTH=517
          Length = 517

 Score = 77.0 bits (188), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 48/70 (68%), Gaps = 7/70 (10%)

Query: 554 SSWVDDSSNVKRENSASTGYSKRPDEAGKTNRKRLKPGENPRPRPKDRQMIQDRVKELRE 613
           S W+DD      E S+  G  K+P E G   +KR K GE+ RPRPKDRQMIQDR+KELR 
Sbjct: 316 SLWIDDD-----ERSSIGGNWKKPHEEG-VKKKRAKAGESRRPRPKDRQMIQDRIKELRG 369

Query: 614 IVPNGAKVCS 623
           ++PNGAK CS
Sbjct: 370 MIPNGAK-CS 378


>AT1G06150.2 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:1869228-1873194 REVERSE
           LENGTH=734
          Length = 734

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/57 (57%), Positives = 42/57 (73%)

Query: 579 EAGKTNRKRLKPGENPRPRPKDRQMIQDRVKELREIVPNGAKVCSSSYIFYVNQHFL 635
           E  K N+KR KPGE+ RPRP+DRQ+IQDR+KELRE+VPNG+K    S +    +H L
Sbjct: 543 EIPKKNKKRAKPGESSRPRPRDRQLIQDRIKELRELVPNGSKCSIDSLLECTIKHML 599


>AT1G06150.1 | Symbols: EMB1444 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr1:1867129-1873194
           REVERSE LENGTH=1322
          Length = 1322

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 33/57 (57%), Positives = 42/57 (73%)

Query: 579 EAGKTNRKRLKPGENPRPRPKDRQMIQDRVKELREIVPNGAKVCSSSYIFYVNQHFL 635
           E  K N+KR KPGE+ RPRP+DRQ+IQDR+KELRE+VPNG+K    S +    +H L
Sbjct: 543 EIPKKNKKRAKPGESSRPRPRDRQLIQDRIKELRELVPNGSKCSIDSLLECTIKHML 599


>AT2G31280.1 | Symbols: CPUORF7 | conserved peptide upstream open
           reading frame 7 | chr2:13339678-13343424 FORWARD
           LENGTH=720
          Length = 720

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 32/54 (59%), Positives = 41/54 (75%)

Query: 582 KTNRKRLKPGENPRPRPKDRQMIQDRVKELREIVPNGAKVCSSSYIFYVNQHFL 635
           K N+KR KPGE+ RPRP+DRQ+IQDR+KELRE+VPNG+K    S +    +H L
Sbjct: 538 KKNKKRAKPGESSRPRPRDRQLIQDRIKELRELVPNGSKCSIDSLLERTIKHML 591


>AT2G31280.3 | Symbols: CPUORF7 | conserved peptide upstream open
           reading frame 7 | chr2:13339678-13343424 FORWARD
           LENGTH=737
          Length = 737

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 32/54 (59%), Positives = 41/54 (75%)

Query: 582 KTNRKRLKPGENPRPRPKDRQMIQDRVKELREIVPNGAKVCSSSYIFYVNQHFL 635
           K N+KR KPGE+ RPRP+DRQ+IQDR+KELRE+VPNG+K    S +    +H L
Sbjct: 538 KKNKKRAKPGESSRPRPRDRQLIQDRIKELRELVPNGSKCSIDSLLERTIKHML 591


>AT2G31280.2 | Symbols: CPUORF7 | conserved peptide upstream open
           reading frame 7 | chr2:13339430-13343309 FORWARD
           LENGTH=723
          Length = 723

 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 32/54 (59%), Positives = 41/54 (75%)

Query: 582 KTNRKRLKPGENPRPRPKDRQMIQDRVKELREIVPNGAKVCSSSYIFYVNQHFL 635
           K N+KR KPGE+ RPRP+DRQ+IQDR+KELRE+VPNG+K    S +    +H L
Sbjct: 510 KKNKKRAKPGESSRPRPRDRQLIQDRIKELRELVPNGSKCSIDSLLERTIKHML 563