Miyakogusa Predicted Gene

Lj3g3v2938480.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2938480.1 tr|F2E7F6|F2E7F6_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2
SV=1,37.37,5e-18,seg,NULL,CUFF.45030.1
         (229 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G22120.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   122   2e-28

>AT5G22120.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: cultured cell;
           Has 30201 Blast hits to 17322 proteins in 780 species:
           Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
           3422; Plants - 5037; Viruses - 0; Other Eukaryotes -
           2996 (source: NCBI BLink). | chr5:7334612-7336755
           REVERSE LENGTH=383
          Length = 383

 Score =  122 bits (306), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/228 (38%), Positives = 127/228 (55%), Gaps = 19/228 (8%)

Query: 11  DEEG--SEKNWSERVEDLVDAGEVESAITLLESIVETLNXXXXXXXXXXXDWVSQLQLAS 68
           +EEG  SE NWSERVEDLV AG+V +AI+ LES+   L                 LQL++
Sbjct: 8   EEEGRISEPNWSERVEDLVVAGDVTAAISFLESLETNLQSRLGSSSSGERTEFG-LQLSA 66

Query: 69  ALTDLANLYSSKGFSLKAHDLQSQASVIKLR--------HRSQIGSESKPTDAALSSSKD 120
           ALT LA+LYSS+G SLK+ +L++++S+IK R         RS    E++   ++   S  
Sbjct: 67  ALTQLADLYSSEGLSLKSDELRTRSSLIKQRALDCDLASSRSSGNVENQSVASSGLKSDP 126

Query: 121 SISEHNLGKEAE-----LPNQTSTASSDDDWEAIAEREPDEILPTISPDCLSGVSNLKLG 175
           ++S  +   + E       N  +  SSDDDWEA+A+ EP ++LP    + L  +S L + 
Sbjct: 127 NVSSFDADGKTEDSKVSSSNSAAHDSSDDDWEALADVEPSKLLPV---EELPEISKLSVE 183

Query: 176 NTKSQTPKRRGRGTFSYDKQKLYSDQLLDSSVIDVEEEETHCNSEDKK 223
             K Q PKRRGRGTF+Y    +YSD+    S  D + E+   + E +K
Sbjct: 184 EPKVQGPKRRGRGTFTYKSDAMYSDRDFSESRFDDDSEDNDLSRESEK 231