Miyakogusa Predicted Gene

Lj3g3v2927360.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2927360.1 Non Chatacterized Hit- tr|D8RJA2|D8RJA2_SELML
Putative uncharacterized protein (Fragment)
OS=Selagin,44.55,3e-19,E1_DerP2_DerF2,MD-2-related lipid-recognition;
seg,NULL; Domain involved in innate immunity and lipi,CUFF.45018.1
         (150 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G44100.1 | Symbols:  | MD-2-related lipid recognition domain-...   145   1e-35
AT3G11780.1 | Symbols:  | MD-2-related lipid recognition domain-...   133   5e-32
AT5G06480.1 | Symbols:  | Immunoglobulin E-set superfamily prote...   132   1e-31
AT3G11780.2 | Symbols:  | MD-2-related lipid recognition domain-...   122   9e-29
AT2G16005.1 | Symbols:  | MD-2-related lipid recognition domain-...    51   4e-07

>AT3G44100.1 | Symbols:  | MD-2-related lipid recognition
           domain-containing protein | chr3:15866162-15867273
           REVERSE LENGTH=152
          Length = 152

 Score =  145 bits (365), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 69/122 (56%), Positives = 93/122 (76%), Gaps = 2/122 (1%)

Query: 30  TFKYCDKKADYAVKVTNIEISPNPVVSGDPATFKISATSGQAIDGGELAIGVSYVGVPVH 89
           +F YCDK+ D  VKVT ++ISP+PVVSG  ATFKI  ++G+ I GG++ I V YVG+PVH
Sbjct: 26  SFTYCDKRLD-PVKVTGVKISPDPVVSGAAATFKIFGSTGEDISGGKVVIRVLYVGIPVH 84

Query: 90  TEKFDICDKVSCP-AKGNFLIPHTQTLPAFTPPGPYSLKMTLDNDKGELLTCIKFNFKIV 148
           TE  D+CD+ +CP A G+F++ H+QTLP+ TPPG Y+LKMT+++  G  LTCI F FKI 
Sbjct: 85  TETHDLCDETACPVAPGSFVLSHSQTLPSITPPGTYTLKMTINDKNGGRLTCISFKFKIT 144

Query: 149 LG 150
           +G
Sbjct: 145 VG 146


>AT3G11780.1 | Symbols:  | MD-2-related lipid recognition
           domain-containing protein / ML domain-containing protein
           | chr3:3724326-3725476 REVERSE LENGTH=153
          Length = 153

 Score =  133 bits (334), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 61/125 (48%), Positives = 83/125 (66%), Gaps = 1/125 (0%)

Query: 27  AKVTFKYCDKKADYAVKVTNIEISPNPVVSGDPATFKISATSGQAIDGGELAIGVSYVGV 86
           A     YCD   +Y VKV  ++I+P P+  G+PATF+ISA +   I  G+L I VSY G 
Sbjct: 23  AATDVHYCDNNEEYEVKVQGVDITPYPIARGEPATFRISANTDTEISSGKLVIEVSYFGW 82

Query: 87  PVHTEKFDICDKVSCP-AKGNFLIPHTQTLPAFTPPGPYSLKMTLDNDKGELLTCIKFNF 145
            +H+E  D+CD+ SCP A G+FL+ H+Q LP +TPPG YSLKM + + + + LTCIKF+F
Sbjct: 83  HIHSETHDLCDETSCPVAIGDFLVAHSQVLPGYTPPGSYSLKMKMLDGRKKELTCIKFSF 142

Query: 146 KIVLG 150
            I  G
Sbjct: 143 DIGFG 147


>AT5G06480.1 | Symbols:  | Immunoglobulin E-set superfamily protein
           | chr5:1976219-1977231 REVERSE LENGTH=153
          Length = 153

 Score =  132 bits (332), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 62/122 (50%), Positives = 85/122 (69%), Gaps = 1/122 (0%)

Query: 29  VTFKYCDKKADYAVKVTNIEISPNPVVSGDPATFKISATSGQAIDGGELAIGVSYVGVPV 88
           +   YC++ A+Y VKV  ++ISPNP+  G+PATF ISA +G+ I  G+L I VSY G  V
Sbjct: 25  IDVHYCEENAEYEVKVKEVDISPNPIAPGEPATFTISANTGREISFGKLVIEVSYFGWHV 84

Query: 89  HTEKFDICDKVSCPAK-GNFLIPHTQTLPAFTPPGPYSLKMTLDNDKGELLTCIKFNFKI 147
           H+E  D+C + SCP + G+FL+ H+Q LP +TPPG Y LKM + + K + LTCIKF+F I
Sbjct: 85  HSETHDLCTETSCPIQTGDFLVAHSQVLPGYTPPGSYLLKMKMLDAKKKELTCIKFSFDI 144

Query: 148 VL 149
            L
Sbjct: 145 GL 146


>AT3G11780.2 | Symbols:  | MD-2-related lipid recognition
           domain-containing protein / ML domain-containing protein
           | chr3:3724326-3725476 REVERSE LENGTH=171
          Length = 171

 Score =  122 bits (306), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 61/143 (42%), Positives = 83/143 (58%), Gaps = 19/143 (13%)

Query: 27  AKVTFKYCDKKADYAVKVTNIEISPNPVVSGDPATFKISATSGQAIDGGELAIGVSYVGV 86
           A     YCD   +Y VKV  ++I+P P+  G+PATF+ISA +   I  G+L I VSY G 
Sbjct: 23  AATDVHYCDNNEEYEVKVQGVDITPYPIARGEPATFRISANTDTEISSGKLVIEVSYFGW 82

Query: 87  PVHTEKFDICDKVSCP-AKGNFLIPHTQTLPAFTPP------------------GPYSLK 127
            +H+E  D+CD+ SCP A G+FL+ H+Q LP +TPP                  G YSLK
Sbjct: 83  HIHSETHDLCDETSCPVAIGDFLVAHSQVLPGYTPPTEKRFNLVSIAYYEFHVEGSYSLK 142

Query: 128 MTLDNDKGELLTCIKFNFKIVLG 150
           M + + + + LTCIKF+F I  G
Sbjct: 143 MKMLDGRKKELTCIKFSFDIGFG 165


>AT2G16005.1 | Symbols:  | MD-2-related lipid recognition
           domain-containing protein | chr2:6959347-6960135 REVERSE
           LENGTH=160
          Length = 160

 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 19/129 (14%)

Query: 31  FKYCDKKADYAVKVTNIEISPNPVVSGDPATFKISATSGQAIDGG-----ELAIGVSYVG 85
           F+ CD   +Y +KV+++EISP+PV         I+  + + I  G     +LA+G+    
Sbjct: 27  FQTCDTGKEYPLKVSSVEISPDPVKRSGNGEITITGVTNKEISDGVTVNLKLAVGM---- 82

Query: 86  VPVHTEKFDICDKVSCPAKGNFLIPHTQTLP-AFTPPGP-----YSLKMTL-DNDKGELL 138
            PV T+ + +CD  +CP       P   TLP  FTP        Y++ +++ D    E +
Sbjct: 83  FPVSTKSYSLCDITACPVAPG---PIVLTLPNIFTPREKRTAIGYTIIISITDKPLKESM 139

Query: 139 TCIKFNFKI 147
            CI F  K+
Sbjct: 140 MCILFVVKL 148