Miyakogusa Predicted Gene
- Lj3g3v2927350.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v2927350.1 tr|B9PDN9|B9PDN9_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_795522
PE=4,44.63,7e-18,seg,NULL; coiled-coil,NULL,CUFF.45013.1
(281 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G22040.3 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 243 1e-64
AT5G22040.2 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 243 1e-64
AT5G22040.1 | Symbols: | unknown protein; Has 30201 Blast hits ... 243 1e-64
AT3G62330.1 | Symbols: | Zinc knuckle (CCHC-type) family protei... 53 3e-07
>AT5G22040.3 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN:
cellular_component unknown. | chr5:7297154-7298363
REVERSE LENGTH=284
Length = 284
Score = 243 bits (620), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 140/293 (47%), Positives = 184/293 (62%), Gaps = 22/293 (7%)
Query: 1 MRRQGQYGDPS-ANTYAASQMHHMAGQRAETKSGSFEGRLEAFTPERENPYANSKPEGQW 59
MRRQG + D S A+ Y A Q+ + F+G+LEAFTPER+ PY++S+ EGQW
Sbjct: 1 MRRQGNFADSSPASAYGAGQI--------QDPHSDFQGQLEAFTPERDQPYSDSQAEGQW 52
Query: 60 RWEVDESKMSNSMTSRVYNEGQGG-DASRSYYQGQRPDPKLNLQNRSNSESRSQAHEEDM 118
RWE D MS M + VYNEGQ G D+SR+YY+GQ DPK ++ + + H+E+
Sbjct: 53 RWERDGPNMSRPMATAVYNEGQQGVDSSRTYYRGQI-DPKSGMEKQGSDPRAQPQHQENP 111
Query: 119 DVGYEGAHLSQTFEGLEKNFHDDIMKLTKEQDDAEDAEHARHREKINAINTQYEEKLAAL 178
GY+ QTFEGLE+ F DDI +L K+Q +AEDAE ARHREKIN IN +YEE+LA L
Sbjct: 112 KTGYDNNRGVQTFEGLEQKFMDDITRLAKDQIEAEDAEIARHREKINTINARYEEQLATL 171
Query: 179 RARHSNRRADFLQRESNVRQQQYEQ----IIRDPYP-----SSGMPPREPHGY--SNVDV 227
RARH+ +R + +++ES RQQQ++Q ++ +P ++ MP P GY S D
Sbjct: 172 RARHTGKREEIMRKESLARQQQFKQQTMGMMDQYHPNVVGQANLMPSGHPQGYIGSAQDP 231
Query: 228 SPAGGEVQRGYSADHFDPYRERARFLASGRDQGFETRGPYPGGRVYDTGSRYY 280
+ R Y +D F+ Y ERARF RD GFE RGPYPGG VYDT SR+Y
Sbjct: 232 AAVADAPPRSYGSDRFEAYGERARFQGGNRDHGFEPRGPYPGGNVYDTSSRFY 284
>AT5G22040.2 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN:
cellular_component unknown; Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:7297154-7298363 REVERSE LENGTH=284
Length = 284
Score = 243 bits (620), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 140/293 (47%), Positives = 184/293 (62%), Gaps = 22/293 (7%)
Query: 1 MRRQGQYGDPS-ANTYAASQMHHMAGQRAETKSGSFEGRLEAFTPERENPYANSKPEGQW 59
MRRQG + D S A+ Y A Q+ + F+G+LEAFTPER+ PY++S+ EGQW
Sbjct: 1 MRRQGNFADSSPASAYGAGQI--------QDPHSDFQGQLEAFTPERDQPYSDSQAEGQW 52
Query: 60 RWEVDESKMSNSMTSRVYNEGQGG-DASRSYYQGQRPDPKLNLQNRSNSESRSQAHEEDM 118
RWE D MS M + VYNEGQ G D+SR+YY+GQ DPK ++ + + H+E+
Sbjct: 53 RWERDGPNMSRPMATAVYNEGQQGVDSSRTYYRGQI-DPKSGMEKQGSDPRAQPQHQENP 111
Query: 119 DVGYEGAHLSQTFEGLEKNFHDDIMKLTKEQDDAEDAEHARHREKINAINTQYEEKLAAL 178
GY+ QTFEGLE+ F DDI +L K+Q +AEDAE ARHREKIN IN +YEE+LA L
Sbjct: 112 KTGYDNNRGVQTFEGLEQKFMDDITRLAKDQIEAEDAEIARHREKINTINARYEEQLATL 171
Query: 179 RARHSNRRADFLQRESNVRQQQYEQ----IIRDPYP-----SSGMPPREPHGY--SNVDV 227
RARH+ +R + +++ES RQQQ++Q ++ +P ++ MP P GY S D
Sbjct: 172 RARHTGKREEIMRKESLARQQQFKQQTMGMMDQYHPNVVGQANLMPSGHPQGYIGSAQDP 231
Query: 228 SPAGGEVQRGYSADHFDPYRERARFLASGRDQGFETRGPYPGGRVYDTGSRYY 280
+ R Y +D F+ Y ERARF RD GFE RGPYPGG VYDT SR+Y
Sbjct: 232 AAVADAPPRSYGSDRFEAYGERARFQGGNRDHGFEPRGPYPGGNVYDTSSRFY 284
>AT5G22040.1 | Symbols: | unknown protein; Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:7297154-7298363 REVERSE LENGTH=284
Length = 284
Score = 243 bits (620), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 140/293 (47%), Positives = 184/293 (62%), Gaps = 22/293 (7%)
Query: 1 MRRQGQYGDPS-ANTYAASQMHHMAGQRAETKSGSFEGRLEAFTPERENPYANSKPEGQW 59
MRRQG + D S A+ Y A Q+ + F+G+LEAFTPER+ PY++S+ EGQW
Sbjct: 1 MRRQGNFADSSPASAYGAGQI--------QDPHSDFQGQLEAFTPERDQPYSDSQAEGQW 52
Query: 60 RWEVDESKMSNSMTSRVYNEGQGG-DASRSYYQGQRPDPKLNLQNRSNSESRSQAHEEDM 118
RWE D MS M + VYNEGQ G D+SR+YY+GQ DPK ++ + + H+E+
Sbjct: 53 RWERDGPNMSRPMATAVYNEGQQGVDSSRTYYRGQI-DPKSGMEKQGSDPRAQPQHQENP 111
Query: 119 DVGYEGAHLSQTFEGLEKNFHDDIMKLTKEQDDAEDAEHARHREKINAINTQYEEKLAAL 178
GY+ QTFEGLE+ F DDI +L K+Q +AEDAE ARHREKIN IN +YEE+LA L
Sbjct: 112 KTGYDNNRGVQTFEGLEQKFMDDITRLAKDQIEAEDAEIARHREKINTINARYEEQLATL 171
Query: 179 RARHSNRRADFLQRESNVRQQQYEQ----IIRDPYP-----SSGMPPREPHGY--SNVDV 227
RARH+ +R + +++ES RQQQ++Q ++ +P ++ MP P GY S D
Sbjct: 172 RARHTGKREEIMRKESLARQQQFKQQTMGMMDQYHPNVVGQANLMPSGHPQGYIGSAQDP 231
Query: 228 SPAGGEVQRGYSADHFDPYRERARFLASGRDQGFETRGPYPGGRVYDTGSRYY 280
+ R Y +D F+ Y ERARF RD GFE RGPYPGG VYDT SR+Y
Sbjct: 232 AAVADAPPRSYGSDRFEAYGERARFQGGNRDHGFEPRGPYPGGNVYDTSSRFY 284
>AT3G62330.1 | Symbols: | Zinc knuckle (CCHC-type) family protein |
chr3:23063329-23065419 REVERSE LENGTH=479
Length = 479
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 40/70 (57%)
Query: 122 YEGAHLSQTFEGLEKNFHDDIMKLTKEQDDAEDAEHARHREKINAINTQYEEKLAALRAR 181
+E QT E LE + D ++L K++D ED E+ +HRE I + Y +KLA LR
Sbjct: 321 FERPPFPQTLEELELEYTRDALELEKKRDKEEDEENNKHRETIRELRESYMKKLAGLRGM 380
Query: 182 HSNRRADFLQ 191
++ + DFLQ
Sbjct: 381 NAKQWDDFLQ 390