Miyakogusa Predicted Gene

Lj3g3v2926310.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2926310.1 CUFF.45007.1
         (321 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G22010.1 | Symbols: AtRFC1, RFC1 | replication factor C1 | ch...   501   e-142
AT1G04730.1 | Symbols: CTF18 | P-loop containing nucleoside trip...    61   1e-09

>AT5G22010.1 | Symbols: AtRFC1, RFC1 | replication factor C1 |
           chr5:7280632-7287037 REVERSE LENGTH=956
          Length = 956

 Score =  501 bits (1289), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 250/316 (79%), Positives = 288/316 (91%), Gaps = 4/316 (1%)

Query: 1   MDEVDGMSAGDRGGVADLIASIKMSKVPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQ 60
           MDEVDGMSAGDRGGVADLIASIK+SK+PIICICNDRYSQKLKSLVNYCL L++RKPTKQQ
Sbjct: 474 MDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLPLNYRKPTKQQ 533

Query: 61  MAKRLMDVAKAEGLQVNEIALEELAERVNGDMRMALNQLHYMSLSMSVINYDDIRKRLLN 120
           MAKRLM +AKAEGL++NEIALEELAERVNGD+R+A+NQL YMSLSMSVI YDDIR+RLL+
Sbjct: 534 MAKRLMHIAKAEGLEINEIALEELAERVNGDIRLAVNQLQYMSLSMSVIKYDDIRQRLLS 593

Query: 121 NAKDEDISPFTAVDKLFGFNAGRLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGEDD 180
           +AKDEDISPFTAVDKLFG+N G+LRMDERIDLSMSDPDLVPLLIQENY+NYRPS  G+D+
Sbjct: 594 SAKDEDISPFTAVDKLFGYNGGKLRMDERIDLSMSDPDLVPLLIQENYLNYRPS--GKDE 651

Query: 181 SGIKRMNLIARAAESIADGDIVNVQIRRYRQWQLSQTSSVASCIIPAALLHGQRETLEQG 240
           +  KRM+L+ARAAESIADGDI+NVQIRRYRQWQLSQ+  VAS I+PA+LLHG RE LEQG
Sbjct: 652 A--KRMDLLARAAESIADGDIINVQIRRYRQWQLSQSCCVASSILPASLLHGSREVLEQG 709

Query: 241 ERNFNRFGGWLGKNSTMGKNMRLLDDLHVHILASRESSSGRDTIRLEYLTLFLKQLVEPL 300
           ERNFNRFGGWLGKNST GKN RL++DLHVH+LASRESS+GR+T+R++YL L L +L  PL
Sbjct: 710 ERNFNRFGGWLGKNSTAGKNRRLMEDLHVHVLASRESSAGRETLRVDYLPLLLSRLTSPL 769

Query: 301 RVLPKVGSSSITFNFL 316
           + LPK  + S   +F+
Sbjct: 770 QTLPKDEAVSEVVDFM 785


>AT1G04730.1 | Symbols: CTF18 | P-loop containing nucleoside
           triphosphate hydrolases superfamily protein |
           chr1:1325385-1331086 REVERSE LENGTH=943
          Length = 943

 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 44/87 (50%)

Query: 28  PIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRLMDVAKAEGLQVNEIALEELAER 87
           P+ICICND Y+  L+ L     +  F +PT  ++  RL  +   EG++    AL  LAE 
Sbjct: 456 PVICICNDLYAPALRPLRQIAKVHIFVQPTVSRVVNRLKYICNMEGMKARSFALSALAEY 515

Query: 88  VNGDMRMALNQLHYMSLSMSVINYDDI 114
              D+R  LN L ++      IN  DI
Sbjct: 516 TECDIRSCLNTLQFLYKKKETINVIDI 542