Miyakogusa Predicted Gene

Lj3g3v2923210.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2923210.1 Non Chatacterized Hit- tr|I1M451|I1M451_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,68.64,0,Ring
finger,Zinc finger, RING-type; no description,Zinc finger,
RING/FYVE/PHD-type; RING/U-box,NULL;,CUFF.44997.1
         (220 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G05120.1 | Symbols:  | Helicase protein with RING/U-box domai...   270   6e-73
AT1G02670.1 | Symbols:  | P-loop containing nucleoside triphosph...   132   1e-31
AT1G61140.3 | Symbols: EDA16 | SNF2 domain-containing protein / ...    92   2e-19
AT1G61140.1 | Symbols: EDA16 | SNF2 domain-containing protein / ...    92   2e-19
AT1G50410.1 | Symbols:  | SNF2 domain-containing protein / helic...    80   1e-15
AT5G22750.1 | Symbols: RAD5 | DNA/RNA helicase protein | chr5:75...    74   6e-14
AT1G11100.2 | Symbols:  | SNF2 domain-containing protein / helic...    73   1e-13
AT1G11100.1 | Symbols:  | SNF2 domain-containing protein / helic...    73   1e-13
AT3G20010.1 | Symbols:  | SNF2 domain-containing protein / helic...    70   8e-13
AT1G61140.2 | Symbols: EDA16 | SNF2 domain-containing protein / ...    67   1e-11
AT3G16600.1 | Symbols:  | SNF2 domain-containing protein / helic...    61   6e-10
AT5G05130.1 | Symbols:  | DNA/RNA helicase protein | chr5:151217...    60   1e-09

>AT1G05120.1 | Symbols:  | Helicase protein with RING/U-box domain |
           chr1:1471624-1476067 REVERSE LENGTH=833
          Length = 833

 Score =  270 bits (690), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 131/220 (59%), Positives = 164/220 (74%), Gaps = 2/220 (0%)

Query: 1   MLLVKHKILKNIMLRRTKIGRAADLAFPEKIISVRRVYLDVKEQDYYKSTCIECLKSVNT 60
           M+L+KHK+LK+I+LRRTK+GRAADLA P +II++RR  LDVKE DYY+S         NT
Sbjct: 467 MILLKHKVLKDILLRRTKLGRAADLALPPRIITLRRDTLDVKEFDYYESLYKNSQAEFNT 526

Query: 61  YVEANIVMNHYADIFGLLTKLRQAVDHPYLVVYSKPEALKGGGVAASDGTVEQVCGICDE 120
           Y+EA  +MN+YA IF LLT+LRQAVDHPYLVVYS         V   +   EQ CG+C +
Sbjct: 527 YIEAGTLMNNYAHIFDLLTRLRQAVDHPYLVVYSNSSGANANLV--DENKSEQECGLCHD 584

Query: 121 PVEDPVVTSCEHVFCNACLVDFSASMDPVLCPSCSLPITVEITSSKDVSGKSNDTAIKGF 180
           P ED VVTSC HVFC ACL+ FSAS+  V CP+CS  +TV+ T+  D   K++ T +KGF
Sbjct: 585 PAEDYVVTSCAHVFCKACLIGFSASLGKVTCPTCSKLLTVDWTTKADTEHKASKTTLKGF 644

Query: 181 RSSSILYKIELENFQTSTKIEALREEIYFMIQRDGSAKGI 220
           R+SSIL +I+L++FQTSTKIEALREEI FM++RDGSAK I
Sbjct: 645 RASSILNRIKLDDFQTSTKIEALREEIRFMVERDGSAKAI 684


>AT1G02670.1 | Symbols:  | P-loop containing nucleoside triphosphate
           hydrolases superfamily protein | chr1:576046-580299
           FORWARD LENGTH=678
          Length = 678

 Score =  132 bits (333), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 76/186 (40%), Positives = 101/186 (54%), Gaps = 40/186 (21%)

Query: 35  RRVYLDVKEQDYYKSTCIECLKSVNTYVEANIVMNHYADIFGLLTKLRQAVDHPYLVVYS 94
           RR  L V E D+Y+S       + + Y++A  +MN+YA IFGLL +LRQAVDHPYLV YS
Sbjct: 384 RRDALSVVEADFYESLYKVSKTTFDGYIQAGTLMNNYAHIFGLLIRLRQAVDHPYLVSYS 443

Query: 95  KPEALKGGGVAASDGTVEQVCGICDEPVEDPVVTSCEHVFCNACLVDFSASMDPVLCPSC 154
            P       + A+    E+ CG   +P +D  VTS EH                      
Sbjct: 444 SPSGANANLLDANKN--EKECGFGHDPSKDYFVTSSEH---------------------- 479

Query: 155 SLPITVEITSSKDVSGKSNDTAIKGFRSSSILYKIELENFQTSTKIEALREEIYFMIQRD 214
                           +++ T +KGFR+SSIL +I L++F+TSTKIEALREEI FM++RD
Sbjct: 480 ----------------QASKTKLKGFRASSILNRINLDDFKTSTKIEALREEIRFMVERD 523

Query: 215 GSAKGI 220
            SAK I
Sbjct: 524 WSAKAI 529


>AT1G61140.3 | Symbols: EDA16 | SNF2 domain-containing protein /
           helicase domain-containing protein / zinc finger
           protein-related | chr1:22535038-22539756 REVERSE
           LENGTH=1122
          Length = 1122

 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 90/170 (52%), Gaps = 14/170 (8%)

Query: 8   ILKNIMLRRTKIGRAAD----LAFPEKIISVRRVYLDVKEQDYYKSTCIECLKSVNTYVE 63
           ILK +MLRRTK G   D    ++ P K I +R+V   V+E+D+Y     E       Y E
Sbjct: 714 ILKTVMLRRTK-GSLLDGKPIISLPPKSIELRKVDFTVEERDFYSKLEAESRTQFREYAE 772

Query: 64  ANIVMNHYADIFGLLTKLRQAVDHPYLVVYSKPEALKGG-GVA----ASDGTVEQVCGIC 118
           A  V  +Y +I  +L +LRQA DHP LV        +   G+A     SD ++  +CGIC
Sbjct: 773 AGTVKQNYVNILLMLLRLRQACDHPLLVNGEYSFTWESSVGLAKKQIQSDASLA-ICGIC 831

Query: 119 DEPVEDPVVTSCEHVFCNACLVDFSASMDPVLCP--SCSLPITVEITSSK 166
           ++  ED V + C HVFC  C+ +   + D   CP  +C++ +T+   SSK
Sbjct: 832 NDAPEDAVASVCGHVFCKQCIYE-RLTGDSNHCPFANCNVRLTISSLSSK 880


>AT1G61140.1 | Symbols: EDA16 | SNF2 domain-containing protein /
            helicase domain-containing protein / zinc finger
            protein-related | chr1:22535038-22540610 REVERSE
            LENGTH=1280
          Length = 1280

 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 90/170 (52%), Gaps = 14/170 (8%)

Query: 8    ILKNIMLRRTKIGRAAD----LAFPEKIISVRRVYLDVKEQDYYKSTCIECLKSVNTYVE 63
            ILK +MLRRTK G   D    ++ P K I +R+V   V+E+D+Y     E       Y E
Sbjct: 872  ILKTVMLRRTK-GSLLDGKPIISLPPKSIELRKVDFTVEERDFYSKLEAESRTQFREYAE 930

Query: 64   ANIVMNHYADIFGLLTKLRQAVDHPYLVVYSKPEALKGG-GVA----ASDGTVEQVCGIC 118
            A  V  +Y +I  +L +LRQA DHP LV        +   G+A     SD ++  +CGIC
Sbjct: 931  AGTVKQNYVNILLMLLRLRQACDHPLLVNGEYSFTWESSVGLAKKQIQSDASL-AICGIC 989

Query: 119  DEPVEDPVVTSCEHVFCNACLVDFSASMDPVLCP--SCSLPITVEITSSK 166
            ++  ED V + C HVFC  C+ +   + D   CP  +C++ +T+   SSK
Sbjct: 990  NDAPEDAVASVCGHVFCKQCIYE-RLTGDSNHCPFANCNVRLTISSLSSK 1038


>AT1G50410.1 | Symbols:  | SNF2 domain-containing protein / helicase
           domain-containing protein / zinc finger protein-related
           | chr1:18672828-18677365 FORWARD LENGTH=981
          Length = 981

 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 84/179 (46%), Gaps = 23/179 (12%)

Query: 8   ILKNIMLRRTKIGRAAD----LAFPEKIISVRRVYLDVKEQDYYKSTCIECLKSVNTYVE 63
           +L+ IMLRRTK G   D    +  P K I++ +V   V+E+ +Y     +       Y  
Sbjct: 556 VLRAIMLRRTK-GTLLDGQPIINLPPKTINLSQVDFSVEERSFYVKLESDSRSQFKAYAA 614

Query: 64  ANIVMNHYADIFGLLTKLRQAVDHPYLVVYSKPEALKGGGVAA---------------SD 108
           A  +  +YA+I  +L +LRQA DHP LV     +++  G V+                S 
Sbjct: 615 AGTLNQNYANILLMLLRLRQACDHPQLVKRYNSDSV--GKVSEEAVKKLPKEDLVSLLSR 672

Query: 109 GTVEQVCGICDEPVEDPVVTSCEHVFCNACLVDF-SASMDPVLCPSCSLPITVEITSSK 166
                +C +C +P EDPVVT C H+FC  C+ D+ +   D    P C   +  ++  SK
Sbjct: 673 LESSPICCVCHDPPEDPVVTLCGHIFCYQCVSDYITGDEDTCPAPRCREQLAHDVVFSK 731


>AT5G22750.1 | Symbols: RAD5 | DNA/RNA helicase protein |
           chr5:7565374-7570871 REVERSE LENGTH=1029
          Length = 1029

 Score = 74.3 bits (181), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 101/239 (42%), Gaps = 53/239 (22%)

Query: 6   HKILKNIMLRRTKI-----GRAADLAFPEKIISVRRVYLDVKEQDYYKSTCIECLKSVNT 60
             ILK IMLRRTK      GR   L  P     V    L   E+D+Y +         + 
Sbjct: 650 QSILKPIMLRRTKSSTDREGRPI-LVLPPADARVIYCELSESERDFYDALFKRSKVKFDQ 708

Query: 61  YVEANIVMNHYADIFGLLTKLRQAVDHPYLVV-------YSKPEAL-------------K 100
           +VE   V+++YA I  LL +LRQ  DHP+LV+       YS    L             +
Sbjct: 709 FVEQGKVLHNYASILELLLRLRQCCDHPFLVMSRGDTAEYSDLNKLSKRFLSGKSSGLER 768

Query: 101 GGGVAASDGTVEQV-----------CGICDEPVEDPVVTSCEHVFCNACLVDFSASMDPV 149
            G    S+  V++V           C IC E +ED V+T C H  C  CL+    +    
Sbjct: 769 EGKDVPSEAFVQEVVEELRKGEQGECPICLEALEDAVLTPCAHRLCRECLLASWRNSTSG 828

Query: 150 LCPSCSLPITVEITSSKDVSGKSNDTAIKGFRSSSILYKIELE-NFQTSTKIEALREEI 207
           LCP C             VS +   TA    R     +++++E N+  S+KI AL EE+
Sbjct: 829 LCPVC----------RNTVSKQELITAPTESR-----FQVDVEKNWVESSKITALLEEL 872


>AT1G11100.2 | Symbols:  | SNF2 domain-containing protein / helicase
            domain-containing protein / zinc finger protein-related |
            chr1:3703934-3709302 REVERSE LENGTH=1269
          Length = 1269

 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 81/175 (46%), Gaps = 24/175 (13%)

Query: 8    ILKNIMLRRTK---IGRAADLAFPEKIISVRRVYLDVKEQDYYKSTCIECLKSVNTYVEA 64
            ILK +MLRRTK   +     ++ P K I +RRV    +E+D+Y     +       Y EA
Sbjct: 842  ILKKVMLRRTKDTLLDGKPVISLPPKSIELRRVDFTKEERDFYSKLECDSRDQFKEYAEA 901

Query: 65   NIVMNHYADIFGLLTKLRQAVDHPYL---------------VVYSKPEALKGGGVAASDG 109
              V  +Y +I  +L +LRQA  HP L               + Y K   L     A+   
Sbjct: 902  GTVKQNYVNILLMLLRLRQACGHPLLVSSLSWSSSAEMVKKLPYEKLTFLLHRLEASL-- 959

Query: 110  TVEQVCGICDEPVEDPVVTSCEHVFCNACLVDFSASMDPVLCPSCSLPITVEITS 164
                +CGIC+   +D VV+ C HVFCN C+ +   + D   CP     + +EI+S
Sbjct: 960  ---AICGICNVAPKDAVVSLCGHVFCNQCICE-CLTRDNNQCPLSYCKVGLEISS 1010


>AT1G11100.1 | Symbols:  | SNF2 domain-containing protein / helicase
           domain-containing protein / zinc finger protein-related
           | chr1:3703934-3709302 REVERSE LENGTH=1226
          Length = 1226

 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 81/175 (46%), Gaps = 24/175 (13%)

Query: 8   ILKNIMLRRTK---IGRAADLAFPEKIISVRRVYLDVKEQDYYKSTCIECLKSVNTYVEA 64
           ILK +MLRRTK   +     ++ P K I +RRV    +E+D+Y     +       Y EA
Sbjct: 799 ILKKVMLRRTKDTLLDGKPVISLPPKSIELRRVDFTKEERDFYSKLECDSRDQFKEYAEA 858

Query: 65  NIVMNHYADIFGLLTKLRQAVDHPYL---------------VVYSKPEALKGGGVAASDG 109
             V  +Y +I  +L +LRQA  HP L               + Y K   L     A+   
Sbjct: 859 GTVKQNYVNILLMLLRLRQACGHPLLVSSLSWSSSAEMVKKLPYEKLTFLLHRLEASL-- 916

Query: 110 TVEQVCGICDEPVEDPVVTSCEHVFCNACLVDFSASMDPVLCPSCSLPITVEITS 164
               +CGIC+   +D VV+ C HVFCN C+ +   + D   CP     + +EI+S
Sbjct: 917 ---AICGICNVAPKDAVVSLCGHVFCNQCICE-CLTRDNNQCPLSYCKVGLEISS 967


>AT3G20010.1 | Symbols:  | SNF2 domain-containing protein / helicase
           domain-containing protein / zinc finger protein-related
           | chr3:6971352-6976340 FORWARD LENGTH=1047
          Length = 1047

 Score = 70.5 bits (171), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 79/163 (48%), Gaps = 20/163 (12%)

Query: 8   ILKNIMLRRTKIGRAAD----LAFPEKIISVRRVYLDVKEQDYYKSTCIECLKSVNTYVE 63
           +L+ IMLRRTK G   D    +  P K++++ +V   V E+ +YK    +       Y +
Sbjct: 627 VLRAIMLRRTK-GTLLDGKPIINLPPKVVNLSQVDFSVAERSFYKKLEADSRSQFKAYAD 685

Query: 64  ANIVMNHYADIFGLLTKLRQAVDHPYLVVYSKPEALKGGGVAASDG-------------- 109
           A  +  +YA+I  LL +LRQA DHP LV     + +     AA                 
Sbjct: 686 AGTLSQNYANILLLLLRLRQACDHPQLVKRYNSDPVGKVSEAAVRRLPREARSRLINRLE 745

Query: 110 TVEQVCGICDEPVEDPVVTSCEHVFCNACLVDFSASMDPVLCP 152
           +   +C  C+EP E PVVT C H+FC  C++++  + D   CP
Sbjct: 746 SSSAICYECNEPPEKPVVTLCGHIFCYECVLEY-ITGDENTCP 787


>AT1G61140.2 | Symbols: EDA16 | SNF2 domain-containing protein /
           helicase domain-containing protein / zinc finger
           protein-related | chr1:22536293-22540610 REVERSE
           LENGTH=1022
          Length = 1022

 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 63/121 (52%), Gaps = 11/121 (9%)

Query: 8   ILKNIMLRRTKIGRAAD----LAFPEKIISVRRVYLDVKEQDYYKSTCIECLKSVNTYVE 63
           ILK +MLRRTK G   D    ++ P K I +R+V   V+E+D+Y     E       Y E
Sbjct: 879 ILKTVMLRRTK-GSLLDGKPIISLPPKSIELRKVDFTVEERDFYSKLEAESRTQFREYAE 937

Query: 64  ANIVMNHYADIFGLLTKLRQAVDHPYLVVYSKPEALKGG-GVA----ASDGTVEQVCGIC 118
           A  V  +Y +I  +L +LRQA DHP LV        +   G+A     SD ++  +CGIC
Sbjct: 938 AGTVKQNYVNILLMLLRLRQACDHPLLVNGEYSFTWESSVGLAKKQIQSDASL-AICGIC 996

Query: 119 D 119
           +
Sbjct: 997 N 997


>AT3G16600.1 | Symbols:  | SNF2 domain-containing protein / helicase
           domain-containing protein / zinc finger protein-related
           | chr3:5652839-5655670 REVERSE LENGTH=638
          Length = 638

 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 65/160 (40%), Gaps = 39/160 (24%)

Query: 8   ILKNIMLRRTKIGRAADLAFPEKIISVRRVYLDVKEQDYYKSTCIECLKSVNTYVEANIV 67
           IL+ IMLRRTK                        E  +Y+   +        Y     +
Sbjct: 298 ILRGIMLRRTK------------------------EWSFYRKLELNSRWKFEEYAADGTL 333

Query: 68  MNHYADIFGLLTKLRQAVDHPYLVV-YSKPEALK----GGGVAASDGTV---------EQ 113
             H A +  +L +LRQA +HP LV  YS  +  +    G  VA  +  +           
Sbjct: 334 HEHMAYLLVMLLRLRQACNHPQLVNGYSHSDTTRKMSDGVRVAPRENLIMFLDLLKLSST 393

Query: 114 VCGICDEPVEDPVVTSCEHVFCNACLVDFSASMDPVLCPS 153
            C +C +P +DPVVT C HVFC  C V  + + D   CP+
Sbjct: 394 TCSVCSDPPKDPVVTLCGHVFCYEC-VSVNINGDNNTCPA 432


>AT5G05130.1 | Symbols:  | DNA/RNA helicase protein |
           chr5:1512173-1514918 FORWARD LENGTH=862
          Length = 862

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 72/167 (43%), Gaps = 19/167 (11%)

Query: 8   ILKNIMLRRTKIGRAADLAFPEKIISVRRVYLDVKEQDYYKSTCIECLKSVNTYVEANIV 67
           ++  I LRRTK    + +  P K +    V L  +E+  Y     E    V   +    +
Sbjct: 497 LMATISLRRTK--EKSLIGLPPKTVETCYVELSPEERQLYDHMEGEAKGVVQNLINNGSL 554

Query: 68  MNHYADIFGLLTKLRQAVDH-----PYLVVYS----------KPEALKGGGVAASDGTVE 112
           M +Y+ +  ++ +LRQ  D      P L  ++          KPE L+    A  DG  +
Sbjct: 555 MRNYSTVLSIILRLRQLCDDMSLCPPELRSFTTSTSVEDVTDKPELLQKLVAALQDGE-D 613

Query: 113 QVCGICDEPVEDPVVTSCEHVFCNACLVDFSASMDPVLCPSCSLPIT 159
             C IC  P  + ++T C H+FC AC++       P LCP C   +T
Sbjct: 614 FDCPICISPPTNIIITRCAHIFCRACILQTLQRSKP-LCPLCRGSLT 659