Miyakogusa Predicted Gene
- Lj3g3v2923200.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v2923200.1 Non Chatacterized Hit- tr|K4C0N4|K4C0N4_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,57.33,5e-19,P-loop containing nucleoside triphosphate
hydrolases,NULL; DNA REPAIR HELICASE RAD5,16,NULL;
SWI/SNF,CUFF.44996.1
(77 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G05120.1 | Symbols: | Helicase protein with RING/U-box domai... 114 1e-26
AT1G02670.1 | Symbols: | P-loop containing nucleoside triphosph... 92 6e-20
AT5G05130.1 | Symbols: | DNA/RNA helicase protein | chr5:151217... 73 5e-14
AT1G11100.1 | Symbols: | SNF2 domain-containing protein / helic... 72 1e-13
AT1G11100.2 | Symbols: | SNF2 domain-containing protein / helic... 71 1e-13
AT1G61140.3 | Symbols: EDA16 | SNF2 domain-containing protein / ... 69 4e-13
AT1G61140.1 | Symbols: EDA16 | SNF2 domain-containing protein / ... 69 5e-13
AT5G43530.1 | Symbols: | Helicase protein with RING/U-box domai... 68 1e-12
AT3G20010.1 | Symbols: | SNF2 domain-containing protein / helic... 67 2e-12
AT1G50410.1 | Symbols: | SNF2 domain-containing protein / helic... 67 3e-12
AT5G22750.1 | Symbols: RAD5 | DNA/RNA helicase protein | chr5:75... 66 5e-12
AT3G16600.1 | Symbols: | SNF2 domain-containing protein / helic... 61 1e-10
AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containi... 61 2e-10
AT3G54280.1 | Symbols: CHR16, CHA16, RGD3, ATBTAF1, BTAF1 | DNA ... 60 3e-10
AT3G54280.2 | Symbols: RGD3 | DNA binding;ATP binding;nucleic ac... 60 4e-10
AT3G06400.2 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 56 5e-09
AT3G06400.3 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 56 5e-09
AT3G06400.1 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 56 5e-09
AT5G18620.1 | Symbols: CHR17 | chromatin remodeling factor17 | c... 56 6e-09
AT5G18620.2 | Symbols: CHR17 | chromatin remodeling factor17 | c... 56 6e-09
AT5G19310.1 | Symbols: | Homeotic gene regulator | chr5:6498906... 55 9e-09
AT3G06010.1 | Symbols: ATCHR12 | Homeotic gene regulator | chr3:... 55 1e-08
AT3G57300.2 | Symbols: INO80 | INO80 ortholog | chr3:21199612-21... 54 3e-08
AT3G57300.1 | Symbols: INO80, ATINO80 | INO80 ortholog | chr3:21... 54 3e-08
AT2G40770.1 | Symbols: | zinc ion binding;DNA binding;helicases... 52 5e-08
AT5G66750.1 | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDD... 52 8e-08
AT2G02090.1 | Symbols: CHR19, CHA19, ETL1 | SNF2 domain-containi... 52 8e-08
AT2G28290.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 51 2e-07
AT2G28290.3 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 51 2e-07
AT2G28290.1 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 51 2e-07
AT3G19210.2 | Symbols: RAD54 | homolog of RAD54 | chr3:6652799-6... 51 2e-07
AT3G19210.1 | Symbols: ATRAD54, CHR25, RAD54 | homolog of RAD54 ... 51 2e-07
AT5G63950.1 | Symbols: CHR24 | chromatin remodeling 24 | chr5:25... 50 4e-07
AT1G08600.1 | Symbols: ATRX, CHR20 | P-loop containing nucleosid... 47 4e-06
AT1G08600.2 | Symbols: ATRX | P-loop containing nucleoside triph... 47 4e-06
AT1G08600.4 | Symbols: ATRX | P-loop containing nucleoside triph... 47 4e-06
AT1G08600.3 | Symbols: ATRX | P-loop containing nucleoside triph... 47 4e-06
AT2G44980.1 | Symbols: | SNF2 domain-containing protein / helic... 46 4e-06
AT2G44980.2 | Symbols: | SNF2 domain-containing protein / helic... 46 4e-06
AT2G18760.1 | Symbols: CHR8 | chromatin remodeling 8 | chr2:8129... 46 5e-06
AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin re... 46 5e-06
>AT1G05120.1 | Symbols: | Helicase protein with RING/U-box domain |
chr1:1471624-1476067 REVERSE LENGTH=833
Length = 833
Score = 114 bits (286), Expect = 1e-26, Method: Composition-based stats.
Identities = 51/75 (68%), Positives = 62/75 (82%)
Query: 1 MEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQQQKEAVSEGLIDGSS 60
M+PWWNP VE+QAQDRIHRIGQ KPIRVV+FI ENT+EERIL+LQ++KE V EG + GS
Sbjct: 757 MDPWWNPAVERQAQDRIHRIGQYKPIRVVRFIIENTVEERILRLQKKKELVFEGTVGGSQ 816
Query: 61 EALGRLKLSEMINLF 75
EA+G+L +M LF
Sbjct: 817 EAIGKLTEEDMRFLF 831
>AT1G02670.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:576046-580299
FORWARD LENGTH=678
Length = 678
Score = 92.4 bits (228), Expect = 6e-20, Method: Composition-based stats.
Identities = 40/63 (63%), Positives = 51/63 (80%)
Query: 1 MEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQQQKEAVSEGLIDGSS 60
M+PWWNP VE+QAQDRIHRIGQ KP+RVV+FI E T+EE+IL LQ++KE + E + S
Sbjct: 602 MDPWWNPAVERQAQDRIHRIGQCKPVRVVRFIMEKTVEEKILTLQKKKEDLFESTLGDSE 661
Query: 61 EAL 63
EA+
Sbjct: 662 EAV 664
>AT5G05130.1 | Symbols: | DNA/RNA helicase protein |
chr5:1512173-1514918 FORWARD LENGTH=862
Length = 862
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 43/52 (82%)
Query: 1 MEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQQQKEAVS 52
+PWWNP VE+QA DRIHRIGQ + +++++ I N+IEER+L+LQQ+K+ ++
Sbjct: 785 FDPWWNPAVEEQAMDRIHRIGQKQEVKMIRMIARNSIEERVLELQQKKKNLA 836
>AT1G11100.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related |
chr1:3703934-3709302 REVERSE LENGTH=1226
Length = 1226
Score = 71.6 bits (174), Expect = 1e-13, Method: Composition-based stats.
Identities = 27/48 (56%), Positives = 38/48 (79%)
Query: 1 MEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQQQK 48
++ WWNP E QA DR HRIGQ +P++VV+F ++T+E+RIL LQQ+K
Sbjct: 1148 LDLWWNPTTEDQAIDRAHRIGQTRPVKVVRFTVKDTVEDRILALQQKK 1195
>AT1G11100.2 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related |
chr1:3703934-3709302 REVERSE LENGTH=1269
Length = 1269
Score = 71.2 bits (173), Expect = 1e-13, Method: Composition-based stats.
Identities = 27/48 (56%), Positives = 38/48 (79%)
Query: 1 MEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQQQK 48
++ WWNP E QA DR HRIGQ +P++VV+F ++T+E+RIL LQQ+K
Sbjct: 1191 LDLWWNPTTEDQAIDRAHRIGQTRPVKVVRFTVKDTVEDRILALQQKK 1238
>AT1G61140.3 | Symbols: EDA16 | SNF2 domain-containing protein /
helicase domain-containing protein / zinc finger
protein-related | chr1:22535038-22539756 REVERSE
LENGTH=1122
Length = 1122
Score = 69.3 bits (168), Expect = 4e-13, Method: Composition-based stats.
Identities = 27/48 (56%), Positives = 37/48 (77%)
Query: 1 MEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQQQK 48
++ WWNP E QA DR HRIGQ +P+ VV+F ++T+E+RIL LQQ+K
Sbjct: 1042 LDLWWNPTTEDQAIDRAHRIGQTRPVTVVRFTVKDTVEDRILALQQKK 1089
>AT1G61140.1 | Symbols: EDA16 | SNF2 domain-containing protein /
helicase domain-containing protein / zinc finger
protein-related | chr1:22535038-22540610 REVERSE
LENGTH=1280
Length = 1280
Score = 69.3 bits (168), Expect = 5e-13, Method: Composition-based stats.
Identities = 27/48 (56%), Positives = 37/48 (77%)
Query: 1 MEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQQQK 48
++ WWNP E QA DR HRIGQ +P+ VV+F ++T+E+RIL LQQ+K
Sbjct: 1200 LDLWWNPTTEDQAIDRAHRIGQTRPVTVVRFTVKDTVEDRILALQQKK 1247
>AT5G43530.1 | Symbols: | Helicase protein with RING/U-box domain |
chr5:17489327-17494830 FORWARD LENGTH=1277
Length = 1277
Score = 67.8 bits (164), Expect = 1e-12, Method: Composition-based stats.
Identities = 32/75 (42%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
Query: 1 MEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQQQKEAVSEGLIDGSS 60
M+PWWNP VE+QA RIHRIGQ + + V +FI ++T+EER+ ++Q +K+ + G + +
Sbjct: 1204 MDPWWNPAVEEQAIMRIHRIGQKRTVFVRRFIVKDTVEERMQQVQARKQRMIAGAL--TD 1261
Query: 61 EALGRLKLSEMINLF 75
E + +L E+ LF
Sbjct: 1262 EEVRSARLEELKMLF 1276
>AT3G20010.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related |
chr3:6971352-6976340 FORWARD LENGTH=1047
Length = 1047
Score = 67.0 bits (162), Expect = 2e-12, Method: Composition-based stats.
Identities = 34/78 (43%), Positives = 49/78 (62%), Gaps = 4/78 (5%)
Query: 1 MEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQQQKE---AVSEGLID 57
++ WWNP E QA DR HRIGQ +P+ V + ++T+E+RILKLQ++K A + G
Sbjct: 969 LDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILKLQEEKRTMVASAFGEEH 1028
Query: 58 GSSEALGRLKLSEMINLF 75
G S A RL + ++ LF
Sbjct: 1029 GGSSAT-RLTVDDLKYLF 1045
>AT1G50410.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr1:18672828-18677365 FORWARD LENGTH=981
Length = 981
Score = 66.6 bits (161), Expect = 3e-12, Method: Composition-based stats.
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 4/78 (5%)
Query: 1 MEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQQQKE---AVSEGLID 57
++ WWNP E QA DR HRIGQ +P+ V + +NT+E+RIL LQ++K A + G
Sbjct: 903 LDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKNTVEDRILALQEEKRKMVASAFGEDH 962
Query: 58 GSSEALGRLKLSEMINLF 75
G S A RL + ++ LF
Sbjct: 963 GGSSAT-RLTVDDLKYLF 979
>AT5G22750.1 | Symbols: RAD5 | DNA/RNA helicase protein |
chr5:7565374-7570871 REVERSE LENGTH=1029
Length = 1029
Score = 65.9 bits (159), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 41/56 (73%)
Query: 1 MEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQQQKEAVSEGLI 56
M+PWWNP VE+QA RIHRIGQ K +++ +FI + T+EER+ +Q +K+ + G +
Sbjct: 956 MDPWWNPAVEEQAVMRIHRIGQTKEVKIRRFIVKGTVEERMEAVQARKQRMISGAL 1011
>AT3G16600.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr3:5652839-5655670 REVERSE LENGTH=638
Length = 638
Score = 61.2 bits (147), Expect = 1e-10, Method: Composition-based stats.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 1 MEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQQQKEAV 51
++ WWNP E QA DR HRIGQ + + V + +NT+EERIL L ++K +
Sbjct: 532 LDLWWNPTTEDQAIDRAHRIGQTRAVTVTRIAIKNTVEERILTLHERKRNI 582
>AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containing
protein / helicase domain-containing protein |
chr3:4065636-4073992 FORWARD LENGTH=2055
Length = 2055
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 36/52 (69%)
Query: 5 WNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQQQKEAVSEGLI 56
WNP ++QQAQDR HRIGQ + + + + I+E+TIEE ILK QK + +I
Sbjct: 1172 WNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRVLDNLVI 1223
>AT3G54280.1 | Symbols: CHR16, CHA16, RGD3, ATBTAF1, BTAF1 | DNA
binding;ATP binding;nucleic acid
binding;binding;helicases;ATP binding;DNA
binding;helicases | chr3:20092361-20103807 FORWARD
LENGTH=2045
Length = 2045
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 47/76 (61%)
Query: 1 MEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQQQKEAVSEGLIDGSS 60
ME WNP + QA DR HR+GQ + + V + I T+EE+++ LQ+ K +V+ +I+ +
Sbjct: 1910 MEHDWNPMRDHQAMDRAHRLGQKRVVNVHRLIMRGTLEEKVMSLQKFKVSVANTVINAEN 1969
Query: 61 EALGRLKLSEMINLFG 76
++ + ++++LF
Sbjct: 1970 ASMKTMNTDQLLDLFA 1985
>AT3G54280.2 | Symbols: RGD3 | DNA binding;ATP binding;nucleic acid
binding;binding;helicases;ATP binding;DNA
binding;helicases | chr3:20092361-20104153 FORWARD
LENGTH=2129
Length = 2129
Score = 59.7 bits (143), Expect = 4e-10, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 47/76 (61%)
Query: 1 MEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQQQKEAVSEGLIDGSS 60
ME WNP + QA DR HR+GQ + + V + I T+EE+++ LQ+ K +V+ +I+ +
Sbjct: 1941 MEHDWNPMRDHQAMDRAHRLGQKRVVNVHRLIMRGTLEEKVMSLQKFKVSVANTVINAEN 2000
Query: 61 EALGRLKLSEMINLFG 76
++ + ++++LF
Sbjct: 2001 ASMKTMNTDQLLDLFA 2016
>AT3G06400.2 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1056
Length = 1056
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 5/69 (7%)
Query: 5 WNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQQQKEAVSEGLIDGSSEALG 64
WNP V+ QAQDR HRIGQ K ++V +F TE+ IEE++++ +K A+ +I G
Sbjct: 588 WNPQVDLQAQDRAHRIGQKKEVQVFRFCTESAIEEKVIERAYKKLALDALVIQQ-----G 642
Query: 65 RLKLSEMIN 73
RL + +N
Sbjct: 643 RLAEQKTVN 651
>AT3G06400.3 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1057
Length = 1057
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 37/52 (71%)
Query: 5 WNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQQQKEAVSEGLI 56
WNP V+ QAQDR HRIGQ K ++V +F TE+ IEE++++ +K A+ +I
Sbjct: 588 WNPQVDLQAQDRAHRIGQKKEVQVFRFCTESAIEEKVIERAYKKLALDALVI 639
>AT3G06400.1 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1055
Length = 1055
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 37/52 (71%)
Query: 5 WNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQQQKEAVSEGLI 56
WNP V+ QAQDR HRIGQ K ++V +F TE+ IEE++++ +K A+ +I
Sbjct: 588 WNPQVDLQAQDRAHRIGQKKEVQVFRFCTESAIEEKVIERAYKKLALDALVI 639
>AT5G18620.1 | Symbols: CHR17 | chromatin remodeling factor17 |
chr5:6196190-6202058 REVERSE LENGTH=1069
Length = 1069
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 5 WNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQQQKEAVSEGLIDGSSEALG 64
WNP V+ QAQDR HRIGQ K ++V +F TEN IE ++++ +K A+ +I G
Sbjct: 593 WNPQVDLQAQDRAHRIGQKKEVQVFRFCTENAIEAKVIERAYKKLALDALVIQQ-----G 647
Query: 65 RLKLSEMIN 73
RL + +N
Sbjct: 648 RLAEQKTVN 656
>AT5G18620.2 | Symbols: CHR17 | chromatin remodeling factor17 |
chr5:6196190-6202058 REVERSE LENGTH=1072
Length = 1072
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 5 WNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQQQKEAVSEGLIDGSSEALG 64
WNP V+ QAQDR HRIGQ K ++V +F TEN IE ++++ +K A+ +I G
Sbjct: 593 WNPQVDLQAQDRAHRIGQKKEVQVFRFCTENAIEAKVIERAYKKLALDALVIQQ-----G 647
Query: 65 RLKLSEMIN 73
RL + +N
Sbjct: 648 RLAEQKTVN 656
>AT5G19310.1 | Symbols: | Homeotic gene regulator |
chr5:6498906-6503432 FORWARD LENGTH=1064
Length = 1064
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 5/73 (6%)
Query: 5 WNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQQQK-----EAVSEGLIDGS 59
WNP ++QQA+DR HRIGQ K +RV ++ +IEE IL+ +QK + + GL + +
Sbjct: 793 WNPQMDQQAEDRAHRIGQKKEVRVFVLVSIGSIEEVILERAKQKMGIDAKVIQAGLFNTT 852
Query: 60 SEALGRLKLSEMI 72
S A R ++ E I
Sbjct: 853 STAQDRREMLEEI 865
>AT3G06010.1 | Symbols: ATCHR12 | Homeotic gene regulator |
chr3:1802435-1807284 REVERSE LENGTH=1102
Length = 1102
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 5/73 (6%)
Query: 5 WNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQQQK-----EAVSEGLIDGS 59
WNP ++QQA+DR HRIGQ K +RV ++ ++EE IL+ +QK + + GL + +
Sbjct: 811 WNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSVEEVILERAKQKMGIDAKVIQAGLFNTT 870
Query: 60 SEALGRLKLSEMI 72
S A R ++ E I
Sbjct: 871 STAQDRREMLEEI 883
>AT3G57300.2 | Symbols: INO80 | INO80 ortholog |
chr3:21199612-21207635 FORWARD LENGTH=1540
Length = 1540
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 5 WNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQQQKEAVSEGLIDG 58
WNP ++ QA DR HR+GQ K + V + I + T+EE+IL QK V + ++ G
Sbjct: 1336 WNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILHRASQKNTVQQLVMTG 1389
>AT3G57300.1 | Symbols: INO80, ATINO80 | INO80 ortholog |
chr3:21199612-21207635 FORWARD LENGTH=1507
Length = 1507
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 5 WNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQQQKEAVSEGLIDG 58
WNP ++ QA DR HR+GQ K + V + I + T+EE+IL QK V + ++ G
Sbjct: 1303 WNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILHRASQKNTVQQLVMTG 1356
>AT2G40770.1 | Symbols: | zinc ion binding;DNA binding;helicases;ATP
binding;nucleic acid binding | chr2:17013535-17021315
REVERSE LENGTH=1664
Length = 1664
Score = 52.4 bits (124), Expect = 5e-08, Method: Composition-based stats.
Identities = 24/48 (50%), Positives = 30/48 (62%)
Query: 1 MEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQQQK 48
+EP NP E QA R+HRIGQ KP V +F+ T+EE I KL + K
Sbjct: 1537 VEPLLNPAAEAQAVGRVHRIGQEKPTLVHRFLVSGTVEESIYKLNRNK 1584
>AT5G66750.1 | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1
| chromatin remodeling 1 | chr5:26649050-26652869
FORWARD LENGTH=764
Length = 764
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%)
Query: 5 WNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILK 43
WNP ++ QA DR HRIGQ KP+ V + T +IE R+LK
Sbjct: 622 WNPQMDLQAMDRCHRIGQTKPVHVYRLSTAQSIETRVLK 660
>AT2G02090.1 | Symbols: CHR19, CHA19, ETL1 | SNF2 domain-containing
protein / helicase domain-containing protein |
chr2:523481-526884 FORWARD LENGTH=763
Length = 763
Score = 52.0 bits (123), Expect = 8e-08, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 39/53 (73%)
Query: 5 WNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQQQKEAVSEGLID 57
+NP +++QA+DR HRIGQ KP+ + + +T++T++E I ++ ++K + +++
Sbjct: 685 FNPQIDRQAEDRCHRIGQTKPVTIFRLVTKSTVDENIYEIAKRKLVLDAAVLE 737
>AT2G28290.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3529
Length = 3529
Score = 50.8 bits (120), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 5/66 (7%)
Query: 5 WNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERIL-----KLQQQKEAVSEGLIDGS 59
WNP V+ QAQ R HRIGQ K + V++F T N++EE++ KL ++++ G D +
Sbjct: 1171 WNPQVDLQAQARAHRIGQKKDVLVLRFETVNSVEEQVRASAEHKLGVANQSITAGFFDNN 1230
Query: 60 SEALGR 65
+ A R
Sbjct: 1231 TSAEDR 1236
>AT2G28290.3 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3543
Length = 3543
Score = 50.8 bits (120), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 5/66 (7%)
Query: 5 WNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERIL-----KLQQQKEAVSEGLIDGS 59
WNP V+ QAQ R HRIGQ K + V++F T N++EE++ KL ++++ G D +
Sbjct: 1171 WNPQVDLQAQARAHRIGQKKDVLVLRFETVNSVEEQVRASAEHKLGVANQSITAGFFDNN 1230
Query: 60 SEALGR 65
+ A R
Sbjct: 1231 TSAEDR 1236
>AT2G28290.1 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3574
Length = 3574
Score = 50.8 bits (120), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 5/66 (7%)
Query: 5 WNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERIL-----KLQQQKEAVSEGLIDGS 59
WNP V+ QAQ R HRIGQ K + V++F T N++EE++ KL ++++ G D +
Sbjct: 1171 WNPQVDLQAQARAHRIGQKKDVLVLRFETVNSVEEQVRASAEHKLGVANQSITAGFFDNN 1230
Query: 60 SEALGR 65
+ A R
Sbjct: 1231 TSAEDR 1236
>AT3G19210.2 | Symbols: RAD54 | homolog of RAD54 |
chr3:6652799-6658876 REVERSE LENGTH=908
Length = 908
Score = 50.8 bits (120), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 2 EPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQQQKEAVSEGL----ID 57
+P WNP ++QA R+ R GQ K + V +F++ TIEE++ + Q KE + + + D
Sbjct: 628 DPDWNPANDKQAAARVWRDGQKKRVYVYRFLSTGTIEEKVYQRQMSKEGLQKVIQHEQTD 687
Query: 58 GSSEALGRLKLSEMINLFGF 77
S+ L ++ +LF F
Sbjct: 688 NSTRQGNLLSTEDLRDLFSF 707
>AT3G19210.1 | Symbols: ATRAD54, CHR25, RAD54 | homolog of RAD54 |
chr3:6652799-6658876 REVERSE LENGTH=910
Length = 910
Score = 50.8 bits (120), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 2 EPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQQQKEAVSEGL----ID 57
+P WNP ++QA R+ R GQ K + V +F++ TIEE++ + Q KE + + + D
Sbjct: 630 DPDWNPANDKQAAARVWRDGQKKRVYVYRFLSTGTIEEKVYQRQMSKEGLQKVIQHEQTD 689
Query: 58 GSSEALGRLKLSEMINLFGF 77
S+ L ++ +LF F
Sbjct: 690 NSTRQGNLLSTEDLRDLFSF 709
>AT5G63950.1 | Symbols: CHR24 | chromatin remodeling 24 |
chr5:25592160-25598405 REVERSE LENGTH=1090
Length = 1090
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 1 MEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQQQK 48
++P WNP + Q+ DR +RIGQ K + V + +T T+EE+I + Q K
Sbjct: 825 VDPAWNPSTDNQSVDRAYRIGQTKDVIVYRLMTSATVEEKIYRKQVYK 872
>AT1G08600.1 | Symbols: ATRX, CHR20 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1458
Length = 1458
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 5 WNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQQQKEAVSEGLIDGSSEALG 64
WNP + QA R R GQ KP+ + + TIEE+I K Q KE ++ ++D +
Sbjct: 1205 WNPTYDLQAIFRAWRYGQKKPVFAYRLMARGTIEEKIYKRQVTKEGLAARVVD-RQQVHR 1263
Query: 65 RLKLSEMINLFGF 77
+ EM++LF F
Sbjct: 1264 TISKEEMLHLFEF 1276
>AT1G08600.2 | Symbols: ATRX | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1479
Length = 1479
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 5 WNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQQQKEAVSEGLIDGSSEALG 64
WNP + QA R R GQ KP+ + + TIEE+I K Q KE ++ ++D +
Sbjct: 1226 WNPTYDLQAIFRAWRYGQKKPVFAYRLMARGTIEEKIYKRQVTKEGLAARVVD-RQQVHR 1284
Query: 65 RLKLSEMINLFGF 77
+ EM++LF F
Sbjct: 1285 TISKEEMLHLFEF 1297
>AT1G08600.4 | Symbols: ATRX | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1479
Length = 1479
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 5 WNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQQQKEAVSEGLIDGSSEALG 64
WNP + QA R R GQ KP+ + + TIEE+I K Q KE ++ ++D +
Sbjct: 1226 WNPTYDLQAIFRAWRYGQKKPVFAYRLMARGTIEEKIYKRQVTKEGLAARVVD-RQQVHR 1284
Query: 65 RLKLSEMINLFGF 77
+ EM++LF F
Sbjct: 1285 TISKEEMLHLFEF 1297
>AT1G08600.3 | Symbols: ATRX | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1479
Length = 1479
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 5 WNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQQQKEAVSEGLIDGSSEALG 64
WNP + QA R R GQ KP+ + + TIEE+I K Q KE ++ ++D +
Sbjct: 1226 WNPTYDLQAIFRAWRYGQKKPVFAYRLMARGTIEEKIYKRQVTKEGLAARVVD-RQQVHR 1284
Query: 65 RLKLSEMINLFGF 77
+ EM++LF F
Sbjct: 1285 TISKEEMLHLFEF 1297
>AT2G44980.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein | chr2:18552440-18556669
REVERSE LENGTH=851
Length = 851
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 36/57 (63%)
Query: 5 WNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQQQKEAVSEGLIDGSSE 61
WNP V++QA R HRIGQ + + +TE+++EE IL+ ++K +S ++ + E
Sbjct: 466 WNPQVDKQALQRAHRIGQISHVLSINLVTEHSVEEVILRRAERKLQLSHNVVGDNME 522
>AT2G44980.2 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein | chr2:18552343-18556669
REVERSE LENGTH=877
Length = 877
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 34/52 (65%)
Query: 5 WNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQQQKEAVSEGLI 56
WNP V++QA R HRIGQ + + +TE+++EE IL+ ++K +S ++
Sbjct: 485 WNPQVDKQALQRAHRIGQISHVLSINLVTEHSVEEVILRRAERKLQLSHNVV 536
>AT2G18760.1 | Symbols: CHR8 | chromatin remodeling 8 |
chr2:8129154-8133502 FORWARD LENGTH=1187
Length = 1187
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 1 MEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQQQKEAVSEGLI 56
+P WNP + QA++R RIGQ K + V + IT TIEE++ Q K ++ ++
Sbjct: 820 FDPDWNPSNDMQARERAWRIGQKKDVTVYRLITRGTIEEKVYHRQIYKHFLTNKIL 875
>AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin
remodeling factor CHD3 (PICKLE) | chr2:10714411-10723763
FORWARD LENGTH=1384
Length = 1384
Score = 45.8 bits (107), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 5 WNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQQQKEAVSEGLIDG 58
WNP + QA R HR+GQ + + + I TIEER+++L ++K V E L+ G
Sbjct: 693 WNPHADLQAMARAHRLGQTNKVMIYRLINRGTIEERMMQLTKKK-MVLEHLVVG 745