Miyakogusa Predicted Gene
- Lj3g3v2923190.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v2923190.2 tr|B9H6V6|B9H6V6_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_559008 PE=4
SV=1,49.62,2e-17,SUBFAMILY NOT NAMED,NULL; PEPTIDYL-PROLYL CIS-TRANS
ISOMERASE,Peptidyl-prolyl cis-trans isomerase, F,CUFF.45010.2
(558 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G21990.1 | Symbols: TPR7 | Tetratricopeptide repeat (TPR)-lik... 567 e-162
AT3G21640.1 | Symbols: TWD1, UCU2, FKBP42, ATFKBP42 | FKBP-type ... 82 1e-15
AT4G30480.2 | Symbols: TPR1, AtTPR1 | Tetratricopeptide repeat (... 75 1e-13
AT5G48570.1 | Symbols: ROF2, ATFKBP65, FKBP65 | FKBP-type peptid... 73 5e-13
AT1G58450.1 | Symbols: TPR6 | Tetratricopeptide repeat (TPR)-lik... 71 2e-12
AT3G25230.1 | Symbols: ROF1, ATFKBP62, FKBP62 | rotamase FKBP 1 ... 70 5e-12
AT3G25230.2 | Symbols: ROF1, ATFKBP62, FKBP62 | rotamase FKBP 1 ... 70 5e-12
AT4G30480.1 | Symbols: TPR1, AtTPR1 | Tetratricopeptide repeat (... 63 5e-10
AT2G42580.1 | Symbols: TTL3, VIT | tetratricopetide-repeat thior... 56 6e-08
AT1G56440.1 | Symbols: TPR5 | Tetratricopeptide repeat (TPR)-lik... 54 4e-07
AT1G56440.2 | Symbols: TPR5 | Tetratricopeptide repeat (TPR)-lik... 53 5e-07
AT3G54010.1 | Symbols: PAS1, DEI1 | FKBP-type peptidyl-prolyl ci... 50 4e-06
AT3G54010.2 | Symbols: PAS1, DEI1 | FKBP-type peptidyl-prolyl ci... 50 4e-06
>AT5G21990.1 | Symbols: TPR7 | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:7273395-7276318 FORWARD
LENGTH=554
Length = 554
Score = 567 bits (1462), Expect = e-162, Method: Compositional matrix adjust.
Identities = 301/542 (55%), Positives = 380/542 (70%), Gaps = 36/542 (6%)
Query: 1 MFNGMMDPELMRIAQEQMSRMSPAELARIQQQMMSNPELMRMASESMNNMNPEDLKRAAE 60
MFNG+MDPE++R+AQ+QMSRM+PA+ ARIQQQMMSNP+LM MA+ESM NM PEDLK+AAE
Sbjct: 1 MFNGLMDPEMIRLAQDQMSRMTPADFARIQQQMMSNPDLMNMATESMKNMRPEDLKQAAE 60
Query: 61 QLKHTRPEEMAEIGEKMASATPDEVAAMRARVDAQIKYQLNAAEMLKKQGNDLHNQGRFN 120
QLKHTRPE+MAEI EKMA A+P+++AAMRA DAQ YQ+NAA+MLKKQGN+LH++G F+
Sbjct: 61 QLKHTRPEDMAEISEKMAKASPEDIAAMRAHADAQFTYQINAAQMLKKQGNELHSRGNFS 120
Query: 121 DALQKYKLAKENIKDIPSSQSGKLILACSLNLMSCYLKTRQYDECIKEGSEVLAYDAKNL 180
DA +KY AK N+K+IPSS+ G ++LACSLNLMSCYLKT Q++ECIKEGSEVL YDA+N+
Sbjct: 121 DAAEKYLRAKNNLKEIPSSKGGAILLACSLNLMSCYLKTNQHEECIKEGSEVLGYDARNV 180
Query: 181 KALYRRGQAYKELGLLNDAVTDLSKALEVYPDDDTIAELLRDTKEELTKGGSDCAPRRLX 240
KALYRRGQAY++LGL DAV+DLSKA EV P+D+TIA++LRD KE L G A R +
Sbjct: 181 KALYRRGQAYRDLGLFEDAVSDLSKAHEVSPEDETIADVLRDVKERLAVEGPGKASRGV- 239
Query: 241 XXXXXXXXXDVPSGNNKSSSLEQTVVQPXXXXXXXXXXXIANSGNPKTNTDSIDALKKDP 300
+V SG NK S E ++ KT+ D + AL+ +P
Sbjct: 240 VIEDITEENNVTSGENKKPSKEAN----------------GHAQGVKTDVDGLQALRDNP 283
Query: 301 EAIRSFQNFISSADPSTLASLNMGQSNNVSPDMIKASSDMISKMSPEELQKMLDMASSFQ 360
EAIR+FQNFIS DP TLA+L+ G++ ++SPDM K +S MI KMSPEE+QKM+ ASSF+
Sbjct: 284 EAIRTFQNFISKTDPDTLAALSGGKAGDMSPDMFKTASSMIGKMSPEEIQKMVQTASSFK 343
Query: 361 GDNPFF-RGGSTDSPLNPGSIPPNVTPDMFKTASDMISKMPADDLKKMFEMASVLKGKES 419
GDNPF ST++ P TPDM K ASDM+ KM ++ ++MF MAS LK +
Sbjct: 344 GDNPFAPTAPSTENGFTP-------TPDMLKLASDMMGKMSPEERERMFNMASSLKA--N 394
Query: 420 IPSAAAVDRNERXXXXXXXXXXXXXGTHAFGESSSSQNLFSNMRXXXXXXXXXXXXDLQE 479
P++ + E ++F S DLQE
Sbjct: 395 APASTSYGNAEASEPRESLGASGSSSGNSFVAPRSG---------FEPSIPSAPPADLQE 445
Query: 480 QMRNQMKDPAMRQMFTSMIKNMSPEMMANMGEQFGVKLSPEEAAKAQQTMSSFSPESLDK 539
QMRNQMKDPAMRQMFTSMIKNM+PEMMA+M EQFG+KLS E+AAKAQQ M+S SP++L+K
Sbjct: 446 QMRNQMKDPAMRQMFTSMIKNMNPEMMASMSEQFGMKLSQEDAAKAQQAMASLSPDALEK 505
Query: 540 MV 541
M+
Sbjct: 506 MM 507
>AT3G21640.1 | Symbols: TWD1, UCU2, FKBP42, ATFKBP42 | FKBP-type
peptidyl-prolyl cis-trans isomerase family protein |
chr3:7619025-7621097 REVERSE LENGTH=365
Length = 365
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 83/152 (54%), Gaps = 8/152 (5%)
Query: 83 DEVAAMRARVDAQIKYQLNAAEMLKKQGNDLHNQGRFNDALQKYKLAKENIKDIPSSQ-S 141
DE +AR D ++ ++ AA+ K GN L + + +A+Q+Y++A + D Q
Sbjct: 159 DETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLY 218
Query: 142 GK---LILA----CSLNLMSCYLKTRQYDECIKEGSEVLAYDAKNLKALYRRGQAYKELG 194
GK + LA C LN+ +C +K ++YDE I + VL + KN KAL+RRG+A ELG
Sbjct: 219 GKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELG 278
Query: 195 LLNDAVTDLSKALEVYPDDDTIAELLRDTKEE 226
++ A D KA + PDD I LR E+
Sbjct: 279 QMDSARDDFRKAQKYAPDDKAIRRELRALAEQ 310
>AT4G30480.2 | Symbols: TPR1, AtTPR1 | Tetratricopeptide repeat
(TPR)-like superfamily protein | chr4:14897500-14898937
FORWARD LENGTH=277
Length = 277
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 68/122 (55%), Gaps = 2/122 (1%)
Query: 100 LNAAEMLKKQGNDLHNQGRFNDALQKYKLAKENIKDIPSSQSGKLILACSLNLMSCYLKT 159
L A K +GN L G + +AL KY A E ++++P S + I C LN C+LK
Sbjct: 102 LAEANEAKAEGNKLFVNGLYEEALSKYAFALELVQELPESIELRSI--CYLNRGVCFLKL 159
Query: 160 RQYDECIKEGSEVLAYDAKNLKALYRRGQAYKELGLLNDAVTDLSKALEVYPDDDTIAEL 219
+ +E IKE ++ L + KAL RR +A+++L DAVTDL K LE+ P +D +
Sbjct: 160 GKCEETIKECTKALELNPTYNKALVRRAEAHEKLEHFEDAVTDLKKILELDPSNDQARKG 219
Query: 220 LR 221
+R
Sbjct: 220 IR 221
>AT5G48570.1 | Symbols: ROF2, ATFKBP65, FKBP65 | FKBP-type
peptidyl-prolyl cis-trans isomerase family protein |
chr5:19690746-19693656 REVERSE LENGTH=578
Length = 578
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 76/135 (56%), Gaps = 6/135 (4%)
Query: 99 QLNAAEMLKKQGNDLHNQGRFNDALQKYKLAKENIK------DIPSSQSGKLILACSLNL 152
++ AA K++GN L G++ A ++Y+ + I+ + +S L +AC+LN
Sbjct: 406 RIEAAGKKKEEGNVLFKAGKYARASKRYERGVKYIEYDSTFDEEEKKKSKDLKIACNLND 465
Query: 153 MSCYLKTRQYDECIKEGSEVLAYDAKNLKALYRRGQAYKELGLLNDAVTDLSKALEVYPD 212
+C LK + Y E K ++VL D++N+KA+YRR AY E L+ A D+ KALE+ PD
Sbjct: 466 AACKLKLKDYKEAAKLSTKVLEMDSRNVKAMYRRAHAYLETADLDLAELDIKKALEIDPD 525
Query: 213 DDTIAELLRDTKEEL 227
+ + + KE++
Sbjct: 526 NKEVKIEYKKLKEKV 540
>AT1G58450.1 | Symbols: TPR6 | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:21718014-21718916 FORWARD
LENGTH=164
Length = 164
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 78/140 (55%), Gaps = 7/140 (5%)
Query: 99 QLNAAEMLKKQGNDLHNQGRFNDALQKYKLAKENIKDIP-----SSQSGKLILACSLNLM 153
++ AA K++GN L+ ++ A +KY A E I++ Q L ++C LN
Sbjct: 6 KIEAANRKKEEGNLLYKTQKYERAAKKYNKAAECIENGKFEGGDEKQVKALRVSCFLNGA 65
Query: 154 SCYLKTRQYDECIKEGSEVLAYDAKNLKALYRRGQAYKELGLLNDAVTDLSKALEVYPDD 213
+C LK + + E I SEVL + +N+KALYRR Q+Y E+G L A D+++ALE P++
Sbjct: 66 ACSLKLKNFLETIVLCSEVLDIEFQNVKALYRRAQSYIEVGDLISAEMDINRALEADPEN 125
Query: 214 DTIAELLRDTKEELTKGGSD 233
+ L + K L+K SD
Sbjct: 126 REVKSLYKAMK--LSKAESD 143
>AT3G25230.1 | Symbols: ROF1, ATFKBP62, FKBP62 | rotamase FKBP 1 |
chr3:9188257-9191137 FORWARD LENGTH=551
Length = 551
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 76/134 (56%), Gaps = 6/134 (4%)
Query: 89 RARVDAQIKYQLNAAEMLKKQGNDLHNQGRFNDALQKYKLAKENIKDIPS------SQSG 142
R D + ++ AA K++GN G+++ A ++Y+ A + I+ S Q+
Sbjct: 386 RESWDMNTEEKIEAASKKKEEGNSKFKGGKYSLASKRYEKAVKFIEYDTSFSEEEKKQAK 445
Query: 143 KLILACSLNLMSCYLKTRQYDECIKEGSEVLAYDAKNLKALYRRGQAYKELGLLNDAVTD 202
L +AC+LN +C LK + Y + K ++VL ++ N+KALYRR QAY EL L+ A D
Sbjct: 446 ALKVACNLNDAACKLKLKDYKQAEKLCTKVLELESTNVKALYRRAQAYMELSDLDLAEFD 505
Query: 203 LSKALEVYPDDDTI 216
+ KALE+ P++ +
Sbjct: 506 VKKALEIDPNNREV 519
>AT3G25230.2 | Symbols: ROF1, ATFKBP62, FKBP62 | rotamase FKBP 1 |
chr3:9188257-9191175 FORWARD LENGTH=562
Length = 562
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 76/134 (56%), Gaps = 6/134 (4%)
Query: 89 RARVDAQIKYQLNAAEMLKKQGNDLHNQGRFNDALQKYKLAKENIKDIPS------SQSG 142
R D + ++ AA K++GN G+++ A ++Y+ A + I+ S Q+
Sbjct: 386 RESWDMNTEEKIEAASKKKEEGNSKFKGGKYSLASKRYEKAVKFIEYDTSFSEEEKKQAK 445
Query: 143 KLILACSLNLMSCYLKTRQYDECIKEGSEVLAYDAKNLKALYRRGQAYKELGLLNDAVTD 202
L +AC+LN +C LK + Y + K ++VL ++ N+KALYRR QAY EL L+ A D
Sbjct: 446 ALKVACNLNDAACKLKLKDYKQAEKLCTKVLELESTNVKALYRRAQAYMELSDLDLAEFD 505
Query: 203 LSKALEVYPDDDTI 216
+ KALE+ P++ +
Sbjct: 506 VKKALEIDPNNREV 519
>AT4G30480.1 | Symbols: TPR1, AtTPR1 | Tetratricopeptide repeat
(TPR)-like superfamily protein | chr4:14897500-14898557
FORWARD LENGTH=208
Length = 208
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 57/104 (54%), Gaps = 2/104 (1%)
Query: 100 LNAAEMLKKQGNDLHNQGRFNDALQKYKLAKENIKDIPSSQSGKLILACSLNLMSCYLKT 159
L A K +GN L G + +AL KY A E ++++P S + I C LN C+LK
Sbjct: 102 LAEANEAKAEGNKLFVNGLYEEALSKYAFALELVQELPESIELRSI--CYLNRGVCFLKL 159
Query: 160 RQYDECIKEGSEVLAYDAKNLKALYRRGQAYKELGLLNDAVTDL 203
+ +E IKE ++ L + KAL RR +A+++L DAVT L
Sbjct: 160 GKCEETIKECTKALELNPTYNKALVRRAEAHEKLEHFEDAVTGL 203
>AT2G42580.1 | Symbols: TTL3, VIT | tetratricopetide-repeat
thioredoxin-like 3 | chr2:17728855-17731461 FORWARD
LENGTH=691
Length = 691
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 71/147 (48%), Gaps = 12/147 (8%)
Query: 84 EVAAMRARVDAQIKYQLNAAEML---KKQGNDLHNQGRFNDALQKYKLAKENIKDIPSSQ 140
E AAM + + ++ LN +M+ + +GN+L + GRF++A Y + +K S+
Sbjct: 436 ERAAMLDQTNPEVVSVLNNVKMVVRARTRGNELFSSGRFSEACVAYG---DGLKQDDSNS 492
Query: 141 SGKLILACSLNLMSCYLKTRQYDECIKEGSEVLAYDAKNLKALYRRGQAYKELGLLNDAV 200
+L C N +C+ K +++ +++ + L +KAL RR +Y +LG DAV
Sbjct: 493 ----VLYC--NRAACWYKLGLWEKSVEDCNHALKSQPSYIKALLRRAASYGKLGRWEDAV 546
Query: 201 TDLSKALEVYPDDDTIAELLRDTKEEL 227
D P D +AE L K L
Sbjct: 547 KDYEFLRRELPGDSEVAESLERAKTVL 573
>AT1G56440.1 | Symbols: TPR5 | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:21138765-21141482 REVERSE
LENGTH=476
Length = 476
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 10/123 (8%)
Query: 107 KKQGNDLHNQGRFNDALQKYKLAKENIKDIPSSQSGKLILACSLNLMSCYLKTRQYDECI 166
K+QGN+ Q +FN+A+ Y +I P++ N YLK ++Y E
Sbjct: 88 KEQGNEFFKQKKFNEAIDCYS---RSIALSPNA-------VTYANRAMAYLKIKRYREAE 137
Query: 167 KEGSEVLAYDAKNLKALYRRGQAYKELGLLNDAVTDLSKALEVYPDDDTIAELLRDTKEE 226
+ +E L D + +KA RR A KELG++ +A D AL + P+ + + D K
Sbjct: 138 VDCTEALNLDDRYIKAYSRRATARKELGMIKEAKEDAEFALRLEPESQELKKQYADIKSL 197
Query: 227 LTK 229
L K
Sbjct: 198 LEK 200
>AT1G56440.2 | Symbols: TPR5 | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:21138765-21141482 REVERSE
LENGTH=494
Length = 494
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 10/123 (8%)
Query: 107 KKQGNDLHNQGRFNDALQKYKLAKENIKDIPSSQSGKLILACSLNLMSCYLKTRQYDECI 166
K+QGN+ Q +FN+A+ Y +I P++ N YLK ++Y E
Sbjct: 88 KEQGNEFFKQKKFNEAIDCYS---RSIALSPNA-------VTYANRAMAYLKIKRYREAE 137
Query: 167 KEGSEVLAYDAKNLKALYRRGQAYKELGLLNDAVTDLSKALEVYPDDDTIAELLRDTKEE 226
+ +E L D + +KA RR A KELG++ +A D AL + P+ + + D K
Sbjct: 138 VDCTEALNLDDRYIKAYSRRATARKELGMIKEAKEDAEFALRLEPESQELKKQYADIKSL 197
Query: 227 LTK 229
L K
Sbjct: 198 LEK 200
>AT3G54010.1 | Symbols: PAS1, DEI1 | FKBP-type peptidyl-prolyl
cis-trans isomerase family protein |
chr3:20001042-20005063 FORWARD LENGTH=635
Length = 635
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 100 LNAAEMLKKQGNDLHNQGRFNDALQKY-KLAKENIKDIPSSQSGKLILA-----CSLNLM 153
++ A+ ++ GN L +G+F A KY K+ +E P + I LN+
Sbjct: 397 MDEADKIRSTGNRLFKEGKFELAKAKYEKVLREFNHVNPQDEDEGKIFGDTRNMLHLNVA 456
Query: 154 SCYLKTRQYDECIKEGSEVLAYDAKNLKALYRRGQAYKELGLLNDAVTDLSKALEV 209
+C LK ++ + I+ ++VL ++K LYRRG AY G +DA D + ++V
Sbjct: 457 ACLLKMGEWRKSIETCNKVLEAKPGHVKGLYRRGMAYIAGGEYDDARNDFNMMIKV 512
>AT3G54010.2 | Symbols: PAS1, DEI1 | FKBP-type peptidyl-prolyl
cis-trans isomerase family protein |
chr3:20001588-20005063 FORWARD LENGTH=545
Length = 545
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 100 LNAAEMLKKQGNDLHNQGRFNDALQKY-KLAKENIKDIPSSQSGKLILA-----CSLNLM 153
++ A+ ++ GN L +G+F A KY K+ +E P + I LN+
Sbjct: 307 MDEADKIRSTGNRLFKEGKFELAKAKYEKVLREFNHVNPQDEDEGKIFGDTRNMLHLNVA 366
Query: 154 SCYLKTRQYDECIKEGSEVLAYDAKNLKALYRRGQAYKELGLLNDAVTDLSKALEV 209
+C LK ++ + I+ ++VL ++K LYRRG AY G +DA D + ++V
Sbjct: 367 ACLLKMGEWRKSIETCNKVLEAKPGHVKGLYRRGMAYIAGGEYDDARNDFNMMIKV 422