Miyakogusa Predicted Gene

Lj3g3v2923170.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2923170.1 tr|I1LRN4|I1LRN4_SOYBN Condensin complex subunit
2 OS=Glycine max PE=3 SV=1,78.89,0,Cnd2,Condensin complex subunit
2/barren; GB DEF: HYPOTHETICAL PROTEIN AT2G32590,NULL; FAMILY NOT
NAM,CUFF.44994.1
         (671 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G32590.1 | Symbols:  | LOCATED IN: chloroplast; EXPRESSED IN:...   739   0.0  

>AT2G32590.1 | Symbols:  | LOCATED IN: chloroplast; EXPRESSED IN: 17
           plant structures; EXPRESSED DURING: 9 growth stages;
           CONTAINS InterPro DOMAIN/s: Barren (InterPro:IPR008418);
           Has 467 Blast hits to 447 proteins in 202 species:
           Archae - 0; Bacteria - 4; Metazoa - 147; Fungi - 168;
           Plants - 39; Viruses - 1; Other Eukaryotes - 108
           (source: NCBI BLink). | chr2:13829420-13833209 REVERSE
           LENGTH=671
          Length = 671

 Score =  739 bits (1908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/676 (57%), Positives = 487/676 (72%), Gaps = 22/676 (3%)

Query: 1   MAETLSPNPALGQKQRLPVAARIQSPTSPFFLGSNDDQLEXXXXXXXXXXXXXXKGLAVS 60
           M E+L+PNP   +++      RIQ+PTSPFFLGSNDD+LE              + +  +
Sbjct: 1   MDESLTPNP---KQKPASTTTRIQAPTSPFFLGSNDDRLEREQARAARAAASRRRSVIFA 57

Query: 61  QSFN--SDADPCLNKQQILDLFQNCIKLASENKINQKNTWELNLIDHLTDIIKAEDEPDA 118
           +     +++DPC +KQQIL+LFQNCIKLASENKINQKNTWELNLIDHL +IIK EDE + 
Sbjct: 58  RGSQPETESDPCFDKQQILELFQNCIKLASENKINQKNTWELNLIDHLCEIIKVEDENNT 117

Query: 119 ETNFQKASCTLEAGVKIYSLRVDSVHSEAYKVLGGMNRAGQDAEEDTTAEGDNIESGQEG 178
           ETNFQKASCTLEAGVKIYS+RVDSVHSEAYKVLGG+ RAG D   D       +E+    
Sbjct: 118 ETNFQKASCTLEAGVKIYSMRVDSVHSEAYKVLGGITRAGHDDGGDHEDAAGAVENAT-N 176

Query: 179 NRKETDKKLSPLSTLEPSFEALNVKKFDAAFVVDPLYRQTTAKFDEGGAKGLLMNNLGVY 238
            +K+ +KK+SPLSTLEPSF+ALNVKKFD AF VDPLY QT+A+FDEGGAKGLL+NNLGVY
Sbjct: 177 QKKQPEKKISPLSTLEPSFDALNVKKFDVAFAVDPLYHQTSAQFDEGGAKGLLLNNLGVY 236

Query: 239 GGCRVLFDSQEVPAKCMEGQNRQDISDSIDLSFLRDCIEQMLLDIHVKDEISPTLSIIVN 298
           GGC+VLFDSQE+P K +   N+ D S++IDLSF+++C+EQM+L++  KDEI P+L  I+N
Sbjct: 237 GGCQVLFDSQEIPGKLVSSANKHDKSETIDLSFVKECVEQMVLNMRKKDEIVPSLRAIIN 296

Query: 299 QFDEKNRRPTDFQLHGQNSAEEFDADVNCENGA----DREEYENC-TTWNXXXXXXXXXX 353
           QFDE+N+RP+D    GQ + E FD  ++  N A    D E YEN  T+++          
Sbjct: 297 QFDEENQRPSDTFSCGQQTTESFD--ISHGNDASYADDDEGYENFGTSFDYEGQSGDVDE 354

Query: 354 XLGSNDADPSFPNYPQENEQFPSPDSDTDERLENVDGYLFLNLGFSSKQNAWAGPDHWKY 413
             G N+A+P + N+ +E E     D D+D+RLENVD YLFL+LG SSKQN+WAGPDHWKY
Sbjct: 355 NFGPNEAEPIYSNFHEEVEPASLQDMDSDDRLENVDDYLFLSLGISSKQNSWAGPDHWKY 414

Query: 414 RKSKVSEVQPTSEDGPTLKTKQPRSKKQAEVDLDFTGSLEKNLLDIFAPPKNPKSLLLPE 473
           RK+K  +VQP SE   +   K+ R KKQAE +LDF  +LE+ + DIFAPPKNPK+LLLP 
Sbjct: 415 RKTKGPDVQPASEIKSSPPAKKTRKKKQAEPELDFAKALEEEMPDIFAPPKNPKTLLLPA 474

Query: 474 SRVPCNTKLPEDCHYQPEDLVKLFLLPNVKCLGRRTKRFS-DGSREQSNEYESFPSWDNG 532
           SR PC TKLPEDCHYQPE+L+KLFLLPNV CLGRR ++ S + SR+Q ++YE   SW N 
Sbjct: 475 SRTPCQTKLPEDCHYQPENLIKLFLLPNVMCLGRRRRKNSGETSRQQPDDYEHGESWGND 534

Query: 533 SVGGGESVDYEGDH--HSDMEDPGTLISQPRLVNKIEVQYDKTSKQVDVQALKVTLWDHV 590
           +V   +   ++ +    SD ED  TLISQPR VNKI+VQYDK SKQVDVQ LK TLW+ +
Sbjct: 535 NVYDDDDGPFDDNENDQSDAEDTNTLISQPRQVNKIDVQYDKASKQVDVQVLKETLWECL 594

Query: 591 QESVKLTSEGQK------EMISFRNMLANFPSECNAASNISDISPHLCFICLLHLANENG 644
           QES +   + ++      E  SF+ +LA+FP +C AA    DISPHLCFICLLHLANE+ 
Sbjct: 595 QESHQPPIQDEEHQQEPPESRSFKVLLASFPDDCQAAERTQDISPHLCFICLLHLANEHN 654

Query: 645 LSIQSTPNLDDLAIYL 660
           LS+  + NLDDL I+L
Sbjct: 655 LSLIGSQNLDDLTIHL 670