Miyakogusa Predicted Gene
- Lj3g3v2910770.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v2910770.2 Non Chatacterized Hit- tr|I1M451|I1M451_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,76.16,0,HELICASE_CTER,Helicase, C-terminal; no description,NULL;
helicase superfamily c-terminal domain,Heli,CUFF.44953.2
(182 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G05120.1 | Symbols: | Helicase protein with RING/U-box domai... 246 8e-66
AT1G02670.1 | Symbols: | P-loop containing nucleoside triphosph... 213 6e-56
AT5G22750.1 | Symbols: RAD5 | DNA/RNA helicase protein | chr5:75... 112 2e-25
AT1G50410.1 | Symbols: | SNF2 domain-containing protein / helic... 110 7e-25
AT3G20010.1 | Symbols: | SNF2 domain-containing protein / helic... 110 8e-25
AT5G43530.1 | Symbols: | Helicase protein with RING/U-box domai... 106 1e-23
AT1G61140.3 | Symbols: EDA16 | SNF2 domain-containing protein / ... 100 5e-22
AT1G61140.1 | Symbols: EDA16 | SNF2 domain-containing protein / ... 100 6e-22
AT1G11100.1 | Symbols: | SNF2 domain-containing protein / helic... 98 3e-21
AT1G11100.2 | Symbols: | SNF2 domain-containing protein / helic... 98 3e-21
AT5G05130.1 | Symbols: | DNA/RNA helicase protein | chr5:151217... 93 1e-19
AT2G40770.1 | Symbols: | zinc ion binding;DNA binding;helicases... 84 6e-17
AT5G66750.1 | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDD... 84 6e-17
AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containi... 76 1e-14
AT3G06010.1 | Symbols: ATCHR12 | Homeotic gene regulator | chr3:... 75 2e-14
AT2G02090.1 | Symbols: CHR19, CHA19, ETL1 | SNF2 domain-containi... 75 2e-14
AT5G18620.1 | Symbols: CHR17 | chromatin remodeling factor17 | c... 75 3e-14
AT5G18620.2 | Symbols: CHR17 | chromatin remodeling factor17 | c... 75 3e-14
AT5G19310.1 | Symbols: | Homeotic gene regulator | chr5:6498906... 74 4e-14
AT3G06400.1 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 74 6e-14
AT3G06400.3 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 74 6e-14
AT3G06400.2 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 74 6e-14
AT2G46020.1 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription re... 73 1e-13
AT2G46020.2 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription re... 73 1e-13
AT1G03750.1 | Symbols: CHR9 | switch 2 | chr1:937920-941068 FORW... 70 1e-12
AT1G48310.1 | Symbols: CHR18, CHA18 | chromatin remodeling facto... 68 3e-12
AT3G54280.1 | Symbols: CHR16, CHA16, RGD3, ATBTAF1, BTAF1 | DNA ... 68 4e-12
AT3G54280.2 | Symbols: RGD3 | DNA binding;ATP binding;nucleic ac... 68 4e-12
AT2G18760.1 | Symbols: CHR8 | chromatin remodeling 8 | chr2:8129... 67 7e-12
AT5G63950.1 | Symbols: CHR24 | chromatin remodeling 24 | chr5:25... 67 9e-12
AT3G57300.1 | Symbols: INO80, ATINO80 | INO80 ortholog | chr3:21... 66 1e-11
AT3G57300.2 | Symbols: INO80 | INO80 ortholog | chr3:21199612-21... 66 1e-11
AT2G28290.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 65 2e-11
AT2G28290.1 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 65 2e-11
AT2G28290.3 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 65 2e-11
AT2G44980.1 | Symbols: | SNF2 domain-containing protein / helic... 65 2e-11
AT5G44800.1 | Symbols: CHR4, PKR1 | chromatin remodeling 4 | chr... 65 2e-11
AT3G16600.1 | Symbols: | SNF2 domain-containing protein / helic... 65 3e-11
AT3G54460.1 | Symbols: | SNF2 domain-containing protein / helic... 63 9e-11
AT2G44980.2 | Symbols: | SNF2 domain-containing protein / helic... 60 6e-10
AT4G31900.2 | Symbols: PKR2 | chromatin remodeling factor, putat... 60 8e-10
AT4G31900.1 | Symbols: PKR2 | chromatin remodeling factor, putat... 60 8e-10
AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin re... 57 5e-09
AT2G13370.1 | Symbols: CHR5 | chromatin remodeling 5 | chr2:5544... 57 5e-09
AT3G19210.2 | Symbols: RAD54 | homolog of RAD54 | chr3:6652799-6... 57 6e-09
AT3G19210.1 | Symbols: ATRAD54, CHR25, RAD54 | homolog of RAD54 ... 57 6e-09
AT1G05490.1 | Symbols: chr31 | chromatin remodeling 31 | chr1:16... 53 1e-07
AT5G07810.1 | Symbols: | SNF2 domain-containing protein / helic... 51 4e-07
>AT1G05120.1 | Symbols: | Helicase protein with RING/U-box domain |
chr1:1471624-1476067 REVERSE LENGTH=833
Length = 833
Score = 246 bits (627), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 115/174 (66%), Positives = 142/174 (81%), Gaps = 3/174 (1%)
Query: 1 MDPVLCPSCSQPITVEITSSKDVSGKSNDTAIKGFRSSSILYKTELENFETSTKIEALRE 60
+ V CP+CS+ +TV+ T+ D K++ T +KGFR+SSIL + +L++F+TSTKIEALRE
Sbjct: 610 LGKVTCPTCSKLLTVDWTTKADTEHKASKTTLKGFRASSILNRIKLDDFQTSTKIEALRE 669
Query: 61 EINFMFQRDGSAKGIVFSEFTSFLDLINYSLVKSGVSCVQLNGCMSLTA---AIKRFNDD 117
EI FM +RDGSAK IVFS+FTSFLDLINY+L K GVSCVQL G M++ A AI +F +D
Sbjct: 670 EIRFMVERDGSAKAIVFSQFTSFLDLINYTLGKCGVSCVQLVGSMTMAARDTAINKFKED 729
Query: 118 PDCKFFLLSLKAAGVALNLTVASHVFLMEPWWNPDAEQQAQDRIHRIGQNKPIR 171
PDC+ FL+SLKA GVALNLTVASHVF+M+PWWNP E+QAQDRIHRIGQ KPIR
Sbjct: 730 PDCRVFLMSLKAGGVALNLTVASHVFMMDPWWNPAVERQAQDRIHRIGQYKPIR 783
>AT1G02670.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:576046-580299
FORWARD LENGTH=678
Length = 678
Score = 213 bits (542), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 104/160 (65%), Positives = 127/160 (79%), Gaps = 6/160 (3%)
Query: 17 ITSSKDVSGKSNDTAIKGFRSSSILYKTELENFETSTKIEALREEINFMFQRDGSAKGIV 76
+TSS+ + K T +KGFR+SSIL + L++F+TSTKIEALREEI FM +RD SAK IV
Sbjct: 474 VTSSEHQASK---TKLKGFRASSILNRINLDDFKTSTKIEALREEIRFMVERDWSAKAIV 530
Query: 77 FSEFTSFLDLINYSLVKSGVSCVQLNGCMSLT---AAIKRFNDDPDCKFFLLSLKAAGVA 133
FS+FTSFLDLI+Y+L KSGVSCVQL G MS AA+K F ++PDC+ L+SL+A GVA
Sbjct: 531 FSQFTSFLDLISYALGKSGVSCVQLVGSMSKAAKDAALKNFKEEPDCRVLLMSLQAGGVA 590
Query: 134 LNLTVASHVFLMEPWWNPDAEQQAQDRIHRIGQNKPIRFC 173
LNLT ASHVF+M+PWWNP E+QAQDRIHRIGQ KP+R
Sbjct: 591 LNLTAASHVFMMDPWWNPAVERQAQDRIHRIGQCKPVRVV 630
>AT5G22750.1 | Symbols: RAD5 | DNA/RNA helicase protein |
chr5:7565374-7570871 REVERSE LENGTH=1029
Length = 1029
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 84/129 (65%), Gaps = 5/129 (3%)
Query: 47 ENFETSTKIEALREEINFMFQRDGSAKGIVFSEFTSFLDLINYSLVKSGVSCVQLNGCMS 106
+N+ S+KI AL EE+ + R +K I+FS++T+FLDL+ L ++ S V+L+G +S
Sbjct: 857 KNWVESSKITALLEELEGL--RSSGSKSILFSQWTAFLDLLQIPLSRNNFSFVRLDGTLS 914
Query: 107 ---LTAAIKRFNDDPDCKFFLLSLKAAGVALNLTVASHVFLMEPWWNPDAEQQAQDRIHR 163
+K F++D L+SLKA GV +NLT AS+ F+M+PWWNP E+QA RIHR
Sbjct: 915 QQQREKVLKEFSEDGSILVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHR 974
Query: 164 IGQNKPIRF 172
IGQ K ++
Sbjct: 975 IGQTKEVKI 983
>AT1G50410.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr1:18672828-18677365 FORWARD LENGTH=981
Length = 981
Score = 110 bits (274), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 70/104 (67%), Gaps = 3/104 (2%)
Query: 70 GSAKGIVFSEFTSFLDLINYSLVKSGVSCVQLNGCMSLTA---AIKRFNDDPDCKFFLLS 126
G K I+FS++T LDL+ SL+++ + +L+G MSL A A+K F++DPD K ++S
Sbjct: 825 GPIKTIIFSQWTGMLDLVELSLIENSIEFRRLDGTMSLIARDRAVKEFSNDPDVKVMIMS 884
Query: 127 LKAAGVALNLTVASHVFLMEPWWNPDAEQQAQDRIHRIGQNKPI 170
LKA + LN+ A HV L++ WWNP E QA DR HRIGQ +P+
Sbjct: 885 LKAGNLGLNMIAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPV 928
>AT3G20010.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr3:6971352-6976340 FORWARD LENGTH=1047
Length = 1047
Score = 110 bits (274), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 69/104 (66%), Gaps = 3/104 (2%)
Query: 70 GSAKGIVFSEFTSFLDLINYSLVKSGVSCVQLNGCMSLTA---AIKRFNDDPDCKFFLLS 126
G+ K I+FS++T LDL+ +++SG+ +L+G MSL A A+K F+ PD K L+S
Sbjct: 891 GAVKTIIFSQWTGMLDLVELRILESGIEFRRLDGTMSLAARDRAVKEFSKKPDVKVMLMS 950
Query: 127 LKAAGVALNLTVASHVFLMEPWWNPDAEQQAQDRIHRIGQNKPI 170
LKA + LN+ A HV L++ WWNP E QA DR HRIGQ +P+
Sbjct: 951 LKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPV 994
>AT5G43530.1 | Symbols: | Helicase protein with RING/U-box domain |
chr5:17489327-17494830 FORWARD LENGTH=1277
Length = 1277
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 82/137 (59%), Gaps = 3/137 (2%)
Query: 37 SSSILYKTELENFETSTKIEALREEINFMFQRDGSAKGIVFSEFTSFLDLINYSLVKSGV 96
+ SI ++N++ S+K+ L + + + + K IVFS++TSFLDL+ L + G
Sbjct: 1093 TDSIFRVDVVKNWKESSKVSELLKCLEKIKKSGSGEKSIVFSQWTSFLDLLEIPLRRRGF 1152
Query: 97 SCVQLNGCMSLTA---AIKRFNDDPDCKFFLLSLKAAGVALNLTVASHVFLMEPWWNPDA 153
++ +G ++ +K FN+ L+SLKA GV LNLT AS VFLM+PWWNP
Sbjct: 1153 EFLRFDGKLAQKGREKVLKEFNETKQKTILLMSLKAGGVGLNLTAASSVFLMDPWWNPAV 1212
Query: 154 EQQAQDRIHRIGQNKPI 170
E+QA RIHRIGQ + +
Sbjct: 1213 EEQAIMRIHRIGQKRTV 1229
>AT1G61140.3 | Symbols: EDA16 | SNF2 domain-containing protein /
helicase domain-containing protein / zinc finger
protein-related | chr1:22535038-22539756 REVERSE
LENGTH=1122
Length = 1122
Score = 100 bits (249), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 74/126 (58%), Gaps = 16/126 (12%)
Query: 73 KGIVFSEFTSFLDLINYSLVKSGVSCVQLNGCMSLTA---AIKRFNDDPDCKFFLLSLKA 129
K IVFS++T L+L+ SLV S + +L+G MS+ A A++ FN P+ ++SLKA
Sbjct: 967 KAIVFSQWTKMLNLLEASLVSSHIQYRRLDGTMSVAARDKAVQDFNTLPEVTVMIMSLKA 1026
Query: 130 AGVALNLTVASHVFLMEPWWNPDAEQQAQDRIHRIGQNKPI-------------RFCALQ 176
A + LN+ A HV +++ WWNP E QA DR HRIGQ +P+ R ALQ
Sbjct: 1027 ASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVVRFTVKDTVEDRILALQ 1086
Query: 177 HSQKLI 182
++++
Sbjct: 1087 QKKRMM 1092
>AT1G61140.1 | Symbols: EDA16 | SNF2 domain-containing protein /
helicase domain-containing protein / zinc finger
protein-related | chr1:22535038-22540610 REVERSE
LENGTH=1280
Length = 1280
Score = 100 bits (248), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 74/126 (58%), Gaps = 16/126 (12%)
Query: 73 KGIVFSEFTSFLDLINYSLVKSGVSCVQLNGCMSLTA---AIKRFNDDPDCKFFLLSLKA 129
K IVFS++T L+L+ SLV S + +L+G MS+ A A++ FN P+ ++SLKA
Sbjct: 1125 KAIVFSQWTKMLNLLEASLVSSHIQYRRLDGTMSVAARDKAVQDFNTLPEVTVMIMSLKA 1184
Query: 130 AGVALNLTVASHVFLMEPWWNPDAEQQAQDRIHRIGQNKPI-------------RFCALQ 176
A + LN+ A HV +++ WWNP E QA DR HRIGQ +P+ R ALQ
Sbjct: 1185 ASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVVRFTVKDTVEDRILALQ 1244
Query: 177 HSQKLI 182
++++
Sbjct: 1245 QKKRMM 1250
>AT1G11100.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related |
chr1:3703934-3709302 REVERSE LENGTH=1226
Length = 1226
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 65/102 (63%), Gaps = 3/102 (2%)
Query: 73 KGIVFSEFTSFLDLINYSLVKSGVSCVQLNGCMSLTA---AIKRFNDDPDCKFFLLSLKA 129
K IVF+++T LDL+ L SG+ + +G M++ A A++ FN PD ++SLKA
Sbjct: 1073 KAIVFTQWTKMLDLLEAGLKSSGIQYRRFDGKMTVPARDAAVQDFNTLPDVSVMIMSLKA 1132
Query: 130 AGVALNLTVASHVFLMEPWWNPDAEQQAQDRIHRIGQNKPIR 171
A + LN+ A HV +++ WWNP E QA DR HRIGQ +P++
Sbjct: 1133 ASLGLNMVAACHVIMLDLWWNPTTEDQAIDRAHRIGQTRPVK 1174
>AT1G11100.2 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related |
chr1:3703934-3709302 REVERSE LENGTH=1269
Length = 1269
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 65/102 (63%), Gaps = 3/102 (2%)
Query: 73 KGIVFSEFTSFLDLINYSLVKSGVSCVQLNGCMSLTA---AIKRFNDDPDCKFFLLSLKA 129
K IVF+++T LDL+ L SG+ + +G M++ A A++ FN PD ++SLKA
Sbjct: 1116 KAIVFTQWTKMLDLLEAGLKSSGIQYRRFDGKMTVPARDAAVQDFNTLPDVSVMIMSLKA 1175
Query: 130 AGVALNLTVASHVFLMEPWWNPDAEQQAQDRIHRIGQNKPIR 171
A + LN+ A HV +++ WWNP E QA DR HRIGQ +P++
Sbjct: 1176 ASLGLNMVAACHVIMLDLWWNPTTEDQAIDRAHRIGQTRPVK 1217
>AT5G05130.1 | Symbols: | DNA/RNA helicase protein |
chr5:1512173-1514918 FORWARD LENGTH=862
Length = 862
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 69/115 (60%), Gaps = 7/115 (6%)
Query: 67 QRDGSAKGIVFSEFTSFLDLINYSLVKSGVSCVQLNGCMSL---TAAIKRFNDDPDCK-- 121
Q + + K +VFS+F L L+ L +G + ++L+G M++ T I F + P+
Sbjct: 702 QENPNTKSVVFSQFRKMLLLLETPLKAAGFTILRLDGAMTVKKRTQVIGEFGN-PELTGP 760
Query: 122 -FFLLSLKAAGVALNLTVASHVFLMEPWWNPDAEQQAQDRIHRIGQNKPIRFCAL 175
L SLKA+G +NLT AS V+L +PWWNP E+QA DRIHRIGQ + ++ +
Sbjct: 761 VVLLASLKASGTGINLTAASRVYLFDPWWNPAVEEQAMDRIHRIGQKQEVKMIRM 815
>AT2G40770.1 | Symbols: | zinc ion binding;DNA binding;helicases;ATP
binding;nucleic acid binding | chr2:17013535-17021315
REVERSE LENGTH=1664
Length = 1664
Score = 84.0 bits (206), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 85/182 (46%), Gaps = 22/182 (12%)
Query: 4 VLCPSCSQPITVEITSSKD--VSGKSNDTAIKGFRSSSILYKTELENFETSTKIEALREE 61
V+CP C Q V + D + S+D K +S ++ + TKIEA+
Sbjct: 1386 VMCPICRQHTDVRNIAYADDRRNSSSSDQDHKDSEASLVVQGS------YGTKIEAVTRR 1439
Query: 62 INFMFQRDGSAKGIVFSEFTSFLDLINYSLVKSGVSCVQLNGCMSLTAAIKRFN------ 115
I ++ D K +VFS + LD++ ++ + ++C+++ G AI +F
Sbjct: 1440 ILWIKSSDPQTKVLVFSSWNDVLDVLEHAFAANSITCIRMKGGRKSQTAISKFKGSEKET 1499
Query: 116 --------DDPDCKFFLLSLKAAGVALNLTVASHVFLMEPWWNPDAEQQAQDRIHRIGQN 167
++ + LL ++ LNL A HV L+EP NP AE QA R+HRIGQ
Sbjct: 1500 QKTNSHQKEEKSIQVLLLLVQHGANGLNLLEAQHVILVEPLLNPAAEAQAVGRVHRIGQE 1559
Query: 168 KP 169
KP
Sbjct: 1560 KP 1561
>AT5G66750.1 | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1
| chromatin remodeling 1 | chr5:26649050-26652869
FORWARD LENGTH=764
Length = 764
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 64/113 (56%), Gaps = 4/113 (3%)
Query: 73 KGIVFSEFTSFLDLINYSLVKSGVSCVQLNGCMSLTA---AIKRFNDDPD-CKFFLLSLK 128
K ++FS++T LD+++Y + G +++G + L IK F+D+ C FLLS +
Sbjct: 542 KVLIFSQWTKLLDIMDYYFSEKGFEVCRIDGSVKLDERRRQIKDFSDEKSSCSIFLLSTR 601
Query: 129 AAGVALNLTVASHVFLMEPWWNPDAEQQAQDRIHRIGQNKPIRFCALQHSQKL 181
A G+ +NLT A L + WNP + QA DR HRIGQ KP+ L +Q +
Sbjct: 602 AGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLSTAQSI 654
>AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containing
protein / helicase domain-containing protein |
chr3:4065636-4073992 FORWARD LENGTH=2055
Length = 2055
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 3/109 (2%)
Query: 70 GSAKGIVFSEFTSFLDLINYSLVKSGVSCVQLNGCM---SLTAAIKRFNDDPDCKFFLLS 126
G + ++F++ T LD++ + G + ++L+G ++RFN +P F+LS
Sbjct: 1090 GGHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTPPEERQTLMQRFNTNPKIFLFILS 1149
Query: 127 LKAAGVALNLTVASHVFLMEPWWNPDAEQQAQDRIHRIGQNKPIRFCAL 175
++ GV +NL A V + WNP +QQAQDR HRIGQ + + L
Sbjct: 1150 TRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRL 1198
>AT3G06010.1 | Symbols: ATCHR12 | Homeotic gene regulator |
chr3:1802435-1807284 REVERSE LENGTH=1102
Length = 1102
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 62/113 (54%), Gaps = 6/113 (5%)
Query: 68 RDGSAKGIVFSEFTSFLDLINYSLVKSGVSCVQLNGCMSLTAA---IKRFNDDPDCKFF- 123
R + ++FS+ T +D++ L + ++L+G +K+FN+ PD +F
Sbjct: 726 RKAGHRILLFSQMTRLIDVLEIYLTLNDYKYLRLDGTTKTDQRGLLLKQFNE-PDSPYFM 784
Query: 124 -LLSLKAAGVALNLTVASHVFLMEPWWNPDAEQQAQDRIHRIGQNKPIRFCAL 175
LLS +A G+ LNL A V + + WNP +QQA+DR HRIGQ K +R L
Sbjct: 785 FLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVL 837
>AT2G02090.1 | Symbols: CHR19, CHA19, ETL1 | SNF2 domain-containing
protein / helicase domain-containing protein |
chr2:523481-526884 FORWARD LENGTH=763
Length = 763
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 61/99 (61%), Gaps = 3/99 (3%)
Query: 75 IVFSEFTSFLDLINYSLVKSGVSCVQLNGCMSLT---AAIKRFNDDPDCKFFLLSLKAAG 131
++FS++TS LD++ ++L GV+ +L+G +T + FN+D LLS +A G
Sbjct: 608 LIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTDRQTIVDTFNNDKSIFACLLSTRAGG 667
Query: 132 VALNLTVASHVFLMEPWWNPDAEQQAQDRIHRIGQNKPI 170
LNLT A V + + +NP ++QA+DR HRIGQ KP+
Sbjct: 668 QGLNLTGADTVIIHDMDFNPQIDRQAEDRCHRIGQTKPV 706
>AT5G18620.1 | Symbols: CHR17 | chromatin remodeling factor17 |
chr5:6196190-6202058 REVERSE LENGTH=1069
Length = 1069
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 59/106 (55%), Gaps = 7/106 (6%)
Query: 75 IVFSEFTSFLDLINYSLVKSGVSCVQLNGCMS---LTAAIKRFNDDPDCKF-FLLSLKAA 130
++FS+ T LD++ L+ G +++G A+I+ +N KF FLLS +A
Sbjct: 515 LIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAG 574
Query: 131 GVALNLTVASHVFLMEPWWNPDAEQQAQDRIHRIGQNKPI---RFC 173
G+ +NL A V L + WNP + QAQDR HRIGQ K + RFC
Sbjct: 575 GLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFC 620
>AT5G18620.2 | Symbols: CHR17 | chromatin remodeling factor17 |
chr5:6196190-6202058 REVERSE LENGTH=1072
Length = 1072
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 59/106 (55%), Gaps = 7/106 (6%)
Query: 75 IVFSEFTSFLDLINYSLVKSGVSCVQLNGCMS---LTAAIKRFNDDPDCKF-FLLSLKAA 130
++FS+ T LD++ L+ G +++G A+I+ +N KF FLLS +A
Sbjct: 515 LIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAG 574
Query: 131 GVALNLTVASHVFLMEPWWNPDAEQQAQDRIHRIGQNKPI---RFC 173
G+ +NL A V L + WNP + QAQDR HRIGQ K + RFC
Sbjct: 575 GLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFC 620
>AT5G19310.1 | Symbols: | Homeotic gene regulator |
chr5:6498906-6503432 FORWARD LENGTH=1064
Length = 1064
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 60/106 (56%), Gaps = 6/106 (5%)
Query: 75 IVFSEFTSFLDLINYSLVKSGVSCVQLNGCMSLTAA---IKRFNDDPDCKFF--LLSLKA 129
++FS+ T +DL+ L + ++L+G +K+FN+ PD +F LLS +A
Sbjct: 715 LLFSQMTRLIDLLEIYLSLNDYMYLRLDGSTKTDQRGILLKQFNE-PDSPYFMFLLSTRA 773
Query: 130 AGVALNLTVASHVFLMEPWWNPDAEQQAQDRIHRIGQNKPIRFCAL 175
G+ LNL A + + + WNP +QQA+DR HRIGQ K +R L
Sbjct: 774 GGLGLNLQTADTIIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVL 819
>AT3G06400.1 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1055
Length = 1055
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 59/106 (55%), Gaps = 7/106 (6%)
Query: 75 IVFSEFTSFLDLINYSLVKSGVSCVQLNGCMS---LTAAIKRFNDDPDCKF-FLLSLKAA 130
++FS+ T LD++ L+ G +++G A+I+ +N KF FLLS +A
Sbjct: 510 LIFSQMTRLLDILEDYLMYRGYLYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAG 569
Query: 131 GVALNLTVASHVFLMEPWWNPDAEQQAQDRIHRIGQNKPI---RFC 173
G+ +NL A V L + WNP + QAQDR HRIGQ K + RFC
Sbjct: 570 GLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFC 615
>AT3G06400.3 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1057
Length = 1057
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 59/106 (55%), Gaps = 7/106 (6%)
Query: 75 IVFSEFTSFLDLINYSLVKSGVSCVQLNGCMS---LTAAIKRFNDDPDCKF-FLLSLKAA 130
++FS+ T LD++ L+ G +++G A+I+ +N KF FLLS +A
Sbjct: 510 LIFSQMTRLLDILEDYLMYRGYLYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAG 569
Query: 131 GVALNLTVASHVFLMEPWWNPDAEQQAQDRIHRIGQNKPI---RFC 173
G+ +NL A V L + WNP + QAQDR HRIGQ K + RFC
Sbjct: 570 GLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFC 615
>AT3G06400.2 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1056
Length = 1056
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 59/106 (55%), Gaps = 7/106 (6%)
Query: 75 IVFSEFTSFLDLINYSLVKSGVSCVQLNGCMS---LTAAIKRFNDDPDCKF-FLLSLKAA 130
++FS+ T LD++ L+ G +++G A+I+ +N KF FLLS +A
Sbjct: 510 LIFSQMTRLLDILEDYLMYRGYLYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAG 569
Query: 131 GVALNLTVASHVFLMEPWWNPDAEQQAQDRIHRIGQNKPI---RFC 173
G+ +NL A V L + WNP + QAQDR HRIGQ K + RFC
Sbjct: 570 GLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFC 615
>AT2G46020.1 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription
regulatory protein SNF2, putative |
chr2:18923304-18931769 FORWARD LENGTH=2192
Length = 2192
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 66/121 (54%), Gaps = 5/121 (4%)
Query: 60 EEINFMFQRDGSAKGIVFSEFTSFLDLINYSLVKSGVSCVQLNGCMSLT---AAIKRFND 116
+ I QR G + ++FS T LD++ L + +++G SL +AI FND
Sbjct: 1313 DRILIKLQRTGH-RVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFND 1371
Query: 117 -DPDCKFFLLSLKAAGVALNLTVASHVFLMEPWWNPDAEQQAQDRIHRIGQNKPIRFCAL 175
D DC FLLS++AAG LNL A V + +P NP E+QA R HRIGQ + ++ +
Sbjct: 1372 PDTDCFIFLLSIRAAGRGLNLQTADTVVIYDPDPNPKNEEQAVARAHRIGQTREVKVIYM 1431
Query: 176 Q 176
+
Sbjct: 1432 E 1432
>AT2G46020.2 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription
regulatory protein SNF2, putative |
chr2:18923304-18931769 FORWARD LENGTH=2193
Length = 2193
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 66/121 (54%), Gaps = 5/121 (4%)
Query: 60 EEINFMFQRDGSAKGIVFSEFTSFLDLINYSLVKSGVSCVQLNGCMSLT---AAIKRFND 116
+ I QR G + ++FS T LD++ L + +++G SL +AI FND
Sbjct: 1314 DRILIKLQRTGH-RVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFND 1372
Query: 117 -DPDCKFFLLSLKAAGVALNLTVASHVFLMEPWWNPDAEQQAQDRIHRIGQNKPIRFCAL 175
D DC FLLS++AAG LNL A V + +P NP E+QA R HRIGQ + ++ +
Sbjct: 1373 PDTDCFIFLLSIRAAGRGLNLQTADTVVIYDPDPNPKNEEQAVARAHRIGQTREVKVIYM 1432
Query: 176 Q 176
+
Sbjct: 1433 E 1433
>AT1G03750.1 | Symbols: CHR9 | switch 2 | chr1:937920-941068 FORWARD
LENGTH=862
Length = 862
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 55/101 (54%), Gaps = 3/101 (2%)
Query: 73 KGIVFSEFTSFLDLINYSLVKSGVSCVQLNGCMSLT---AAIKRFNDDPDCKFFLLSLKA 129
K ++FS LD++ L++ G S +L+G + + FN P + FL+S KA
Sbjct: 546 KILLFSYSVRMLDILEKFLIRKGYSFARLDGSTPTNLRQSLVDDFNASPSKQVFLISTKA 605
Query: 130 AGVALNLTVASHVFLMEPWWNPDAEQQAQDRIHRIGQNKPI 170
G+ LNL A+ V + +P WNP + QAQDR R GQ + +
Sbjct: 606 GGLGLNLVSANRVVIFDPNWNPSHDLQAQDRSFRYGQKRHV 646
>AT1G48310.1 | Symbols: CHR18, CHA18 | chromatin remodeling factor18
| chr1:17848620-17853731 REVERSE LENGTH=673
Length = 673
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 55/101 (54%), Gaps = 3/101 (2%)
Query: 69 DGSAKGIVFSEFTSFLDLINYSLVKSGVSCVQLNGCM---SLTAAIKRFNDDPDCKFFLL 125
+ K +VF+ S L+ ++ L K V C++++G S A + F D + K +L
Sbjct: 482 EAGCKFLVFAHHQSMLEELHQFLKKKKVGCIRIDGSTPASSRQALVSDFQDKDEIKAAVL 541
Query: 126 SLKAAGVALNLTVASHVFLMEPWWNPDAEQQAQDRIHRIGQ 166
S++AAGV + LT AS V E W P QA+DR HRIGQ
Sbjct: 542 SIRAAGVGITLTAASTVIFAELSWTPGDLIQAEDRAHRIGQ 582
>AT3G54280.1 | Symbols: CHR16, CHA16, RGD3, ATBTAF1, BTAF1 | DNA
binding;ATP binding;nucleic acid
binding;binding;helicases;ATP binding;DNA
binding;helicases | chr3:20092361-20103807 FORWARD
LENGTH=2045
Length = 2045
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 57/107 (53%), Gaps = 6/107 (5%)
Query: 70 GSAKGIVFSEFTSFLDLINYSLVKS---GVSCVQLNGCM---SLTAAIKRFNDDPDCKFF 123
G + ++F++ + LD+I L ++ V+ ++L+G + +K FN DP
Sbjct: 1829 GQHRVLIFAQHKALLDIIEKDLFQAHMKSVTYMRLDGSVVPEKRFEIVKAFNSDPTIDVL 1888
Query: 124 LLSLKAAGVALNLTVASHVFLMEPWWNPDAEQQAQDRIHRIGQNKPI 170
LL+ G+ LNLT A + ME WNP + QA DR HR+GQ + +
Sbjct: 1889 LLTTHVGGLGLNLTSADTLVFMEHDWNPMRDHQAMDRAHRLGQKRVV 1935
>AT3G54280.2 | Symbols: RGD3 | DNA binding;ATP binding;nucleic acid
binding;binding;helicases;ATP binding;DNA
binding;helicases | chr3:20092361-20104153 FORWARD
LENGTH=2129
Length = 2129
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 57/107 (53%), Gaps = 6/107 (5%)
Query: 70 GSAKGIVFSEFTSFLDLINYSLVKS---GVSCVQLNGCM---SLTAAIKRFNDDPDCKFF 123
G + ++F++ + LD+I L ++ V+ ++L+G + +K FN DP
Sbjct: 1860 GQHRVLIFAQHKALLDIIEKDLFQAHMKSVTYMRLDGSVVPEKRFEIVKAFNSDPTIDVL 1919
Query: 124 LLSLKAAGVALNLTVASHVFLMEPWWNPDAEQQAQDRIHRIGQNKPI 170
LL+ G+ LNLT A + ME WNP + QA DR HR+GQ + +
Sbjct: 1920 LLTTHVGGLGLNLTSADTLVFMEHDWNPMRDHQAMDRAHRLGQKRVV 1966
>AT2G18760.1 | Symbols: CHR8 | chromatin remodeling 8 |
chr2:8129154-8133502 FORWARD LENGTH=1187
Length = 1187
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 68/131 (51%), Gaps = 5/131 (3%)
Query: 48 NFETSTKIEALREEINFMFQRDGSAKGIVFSEFTSFLDLINYSLVKSGVSCVQLNGCMSL 107
N E S K++ + E + Q+ + ++FS+ LD++ LV + S +++G +
Sbjct: 722 NPERSGKMKVVAEVLKVWKQQ--GHRVLLFSQTQQMLDILESFLVANEYSYRRMDGLTPV 779
Query: 108 T---AAIKRFNDDPDCKFFLLSLKAAGVALNLTVASHVFLMEPWWNPDAEQQAQDRIHRI 164
A I FN+ D F+L+ K G+ NLT A+ V + +P WNP + QA++R RI
Sbjct: 780 KQRMALIDEFNNSEDMFVFVLTTKVGGLGTNLTGANRVIIFDPDWNPSNDMQARERAWRI 839
Query: 165 GQNKPIRFCAL 175
GQ K + L
Sbjct: 840 GQKKDVTVYRL 850
>AT5G63950.1 | Symbols: CHR24 | chromatin remodeling 24 |
chr5:25592160-25598405 REVERSE LENGTH=1090
Length = 1090
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 75 IVFSEFTSFLDLINYSLVKSGVSCVQLNGCMSLTAAIK---RFNDDPDCKFFLLSLKAAG 131
++FS+ L+LI SL +G S ++++G +K F + FLL+ + G
Sbjct: 752 LIFSQTRKMLNLIQDSLTSNGYSFLRIDGTTKAPDRLKTVEEFQEGHVAPIFLLTSQVGG 811
Query: 132 VALNLTVASHVFLMEPWWNPDAEQQAQDRIHRIGQNKPI 170
+ L LT A V +++P WNP + Q+ DR +RIGQ K +
Sbjct: 812 LGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQTKDV 850
>AT3G57300.1 | Symbols: INO80, ATINO80 | INO80 ortholog |
chr3:21199612-21207635 FORWARD LENGTH=1507
Length = 1507
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 3/111 (2%)
Query: 68 RDGSAKGIVFSEFTSFLDLINYSLVKSGVSCVQLNGC---MSLTAAIKRFNDDPDCKFFL 124
R G+ + ++F++ T L+++ + ++L+G M ++ F D FL
Sbjct: 1219 RAGNHRVLLFAQMTKMLNILEDYMNYRKYKYLRLDGSSTIMDRRDMVRDFQHRSDIFVFL 1278
Query: 125 LSLKAAGVALNLTVASHVFLMEPWWNPDAEQQAQDRIHRIGQNKPIRFCAL 175
LS +A G+ +NLT A V E WNP + QA DR HR+GQ K + L
Sbjct: 1279 LSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRL 1329
>AT3G57300.2 | Symbols: INO80 | INO80 ortholog |
chr3:21199612-21207635 FORWARD LENGTH=1540
Length = 1540
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 68 RDGSAKGIVFSEFTSFLDLINYSLVKSGVSCVQLNGC---MSLTAAIKRFNDDPDCKFFL 124
R G+ + ++F++ T L+++ + ++L+G M ++ F D FL
Sbjct: 1252 RAGNHRVLLFAQMTKMLNILEDYMNYRKYKYLRLDGSSTIMDRRDMVRDFQHRSDIFVFL 1311
Query: 125 LSLKAAGVALNLTVASHVFLMEPWWNPDAEQQAQDRIHRIGQNKPI 170
LS +A G+ +NLT A V E WNP + QA DR HR+GQ K +
Sbjct: 1312 LSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDV 1357
>AT2G28290.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3529
Length = 3529
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 75 IVFSEFTSFLDLINYSLVKSGVSCVQLNGCMS---LTAAIKRFNDDPDCKF-FLLSLKAA 130
+ FS T LD++ L G ++L+G S A I FN F FLLS++A
Sbjct: 1093 LFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGDRGALIDGFNKSGSPFFIFLLSIRAG 1152
Query: 131 GVALNLTVASHVFLMEPWWNPDAEQQAQDRIHRIGQNKPI 170
GV +NL A V L + WNP + QAQ R HRIGQ K +
Sbjct: 1153 GVGVNLQAADTVILFDTDWNPQVDLQAQARAHRIGQKKDV 1192
>AT2G28290.1 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3574
Length = 3574
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 75 IVFSEFTSFLDLINYSLVKSGVSCVQLNGCMS---LTAAIKRFNDDPDCKF-FLLSLKAA 130
+ FS T LD++ L G ++L+G S A I FN F FLLS++A
Sbjct: 1093 LFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGDRGALIDGFNKSGSPFFIFLLSIRAG 1152
Query: 131 GVALNLTVASHVFLMEPWWNPDAEQQAQDRIHRIGQNKPI 170
GV +NL A V L + WNP + QAQ R HRIGQ K +
Sbjct: 1153 GVGVNLQAADTVILFDTDWNPQVDLQAQARAHRIGQKKDV 1192
>AT2G28290.3 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3543
Length = 3543
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 75 IVFSEFTSFLDLINYSLVKSGVSCVQLNGCMS---LTAAIKRFNDDPDCKF-FLLSLKAA 130
+ FS T LD++ L G ++L+G S A I FN F FLLS++A
Sbjct: 1093 LFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGDRGALIDGFNKSGSPFFIFLLSIRAG 1152
Query: 131 GVALNLTVASHVFLMEPWWNPDAEQQAQDRIHRIGQNKPI 170
GV +NL A V L + WNP + QAQ R HRIGQ K +
Sbjct: 1153 GVGVNLQAADTVILFDTDWNPQVDLQAQARAHRIGQKKDV 1192
>AT2G44980.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein | chr2:18552440-18556669
REVERSE LENGTH=851
Length = 851
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Query: 69 DGSAKGIVFSEFTSFLDLINYSLVKSGVSCVQLNGCMSLT---AAIKRFNDDPDCKF-FL 124
D + ++FS+ TS LD++ + S +L+G + AAIK F+ D F F+
Sbjct: 382 DSGHRVLLFSQMTSTLDILQDFMELRRYSYERLDGSVRAEERFAAIKNFSVDGSNAFVFM 441
Query: 125 LSLKAAGVALNLTVASHVFLMEPWWNPDAEQQAQDRIHRIGQ 166
+S +A GV LNL A V E WNP ++QA R HRIGQ
Sbjct: 442 ISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQ 483
>AT5G44800.1 | Symbols: CHR4, PKR1 | chromatin remodeling 4 |
chr5:18083659-18092162 REVERSE LENGTH=2223
Length = 2223
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Query: 75 IVFSEFTSFLDLI-NYSLVKSGVSCVQ-LNGCMSLT---AAIKRFNDDPDCKFFLLSLKA 129
++FS+ T LD++ +Y ++ G + ++G +++ AAI RFN D + FLLS +A
Sbjct: 1024 LIFSQMTKLLDILEDYLNIEFGPKTFERVDGSVAVADRQAAIARFNQDKNRFVFLLSTRA 1083
Query: 130 AGVALNLTVASHVFLMEPWWNPDAEQQAQDRIHRIGQNK 168
G+ +NL A V + + +NP A+ QA +R HRIGQ+K
Sbjct: 1084 CGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSK 1122
>AT3G16600.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr3:5652839-5655670 REVERSE LENGTH=638
Length = 638
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 33/48 (68%)
Query: 123 FLLSLKAAGVALNLTVASHVFLMEPWWNPDAEQQAQDRIHRIGQNKPI 170
L+SLKA + LN+ ASHV L++ WWNP E QA DR HRIGQ + +
Sbjct: 510 MLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAIDRAHRIGQTRAV 557
>AT3G54460.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / F-box family protein |
chr3:20162050-20167186 REVERSE LENGTH=1378
Length = 1378
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 73 KGIVFSEFTSFLDLINYSLVKSGVSCVQLNGCM---SLTAAIKRFNDDPDCKFFLLSLKA 129
K ++FS+F + +I L +G+ ++ M + A+ F +D DC L+
Sbjct: 1195 KVLIFSQFLEHIHVIEQQLTTAGIKFGKMYSPMQSYNKMKALAMFQNDADCMALLMDGSG 1254
Query: 130 AGVALNLTVASHVFLMEPWWNPDAEQQAQDRIHRIGQNKPI 170
A + L+L+ +HVFLMEP W+ E+Q R HR+G +PI
Sbjct: 1255 A-LGLDLSFVTHVFLMEPIWDKSLEEQVISRAHRMGAKRPI 1294
>AT2G44980.2 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein | chr2:18552343-18556669
REVERSE LENGTH=877
Length = 877
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 14/112 (12%)
Query: 69 DGSAKGIVFSEFTSFLDLINYSLVKSGVSCVQLNGCMSLT---AAIKRFN---------- 115
D + ++FS+ TS LD++ + S +L+G + AAIK F+
Sbjct: 391 DSGHRVLLFSQMTSTLDILQDFMELRRYSYERLDGSVRAEERFAAIKNFSAKTERGLDSE 450
Query: 116 -DDPDCKFFLLSLKAAGVALNLTVASHVFLMEPWWNPDAEQQAQDRIHRIGQ 166
D + F++S +A GV LNL A V E WNP ++QA R HRIGQ
Sbjct: 451 VDGSNAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQ 502
>AT4G31900.2 | Symbols: PKR2 | chromatin remodeling factor, putative
| chr4:15431528-15438443 FORWARD LENGTH=1161
Length = 1161
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 4/107 (3%)
Query: 75 IVFSEFTSFLDLINYSLVKSGVSCVQLNGCMS---LTAAIKRFNDDPDCKF-FLLSLKAA 130
+++++F L L+ + +++G +S I RFN + +F FLLS +A
Sbjct: 503 LIYTQFQHTLYLLEDYFTFKNWNYERIDGKISGPERQVRIDRFNAENSNRFCFLLSTRAG 562
Query: 131 GVALNLTVASHVFLMEPWWNPDAEQQAQDRIHRIGQNKPIRFCALQH 177
G+ +NL A V + + WNP A+ QA R+HR+GQ + L H
Sbjct: 563 GIGINLATADTVIIYDSDWNPHADLQAMARVHRLGQTNKVMIYRLIH 609
>AT4G31900.1 | Symbols: PKR2 | chromatin remodeling factor, putative
| chr4:15431528-15438443 FORWARD LENGTH=1202
Length = 1202
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 4/107 (3%)
Query: 75 IVFSEFTSFLDLINYSLVKSGVSCVQLNGCMS---LTAAIKRFNDDPDCKF-FLLSLKAA 130
+++++F L L+ + +++G +S I RFN + +F FLLS +A
Sbjct: 544 LIYTQFQHTLYLLEDYFTFKNWNYERIDGKISGPERQVRIDRFNAENSNRFCFLLSTRAG 603
Query: 131 GVALNLTVASHVFLMEPWWNPDAEQQAQDRIHRIGQNKPIRFCALQH 177
G+ +NL A V + + WNP A+ QA R+HR+GQ + L H
Sbjct: 604 GIGINLATADTVIIYDSDWNPHADLQAMARVHRLGQTNKVMIYRLIH 650
>AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin
remodeling factor CHD3 (PICKLE) | chr2:10714411-10723763
FORWARD LENGTH=1384
Length = 1384
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 75 IVFSEFTSFLDLINYSLVKSGVSCVQLNGCMSLTAA---IKRFNDDPDCKF-FLLSLKAA 130
+++++F LDL+ +++G + I RFN KF FLLS +A
Sbjct: 615 LIYTQFQHMLDLLEDYCTHKKWQYERIDGKVGGAERQIRIDRFNAKNSNKFCFLLSTRAG 674
Query: 131 GVALNLTVASHVFLMEPWWNPDAEQQAQDRIHRIGQNKPIRFCAL 175
G+ +NL A V + + WNP A+ QA R HR+GQ + L
Sbjct: 675 GLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIYRL 719
>AT2G13370.1 | Symbols: CHR5 | chromatin remodeling 5 |
chr2:5544601-5555543 REVERSE LENGTH=1724
Length = 1724
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Query: 68 RDGSAKGIVFSEFTSFLDLINYSLVKSGVSCVQLNGCMSLT---AAIKRFNDDPDCKF-F 123
R+ + ++FS+ LD++ L G +L+G A+ FN F F
Sbjct: 952 RETKHRVLIFSQMVRMLDILAEYLSLRGFQFQRLDGSTKAELRQQAMDHFNAPASDDFCF 1011
Query: 124 LLSLKAAGVALNLTVASHVFLMEPWWNPDAEQQAQDRIHRIGQNKPI 170
LLS +A G+ +NL A V + + WNP + QA R HRIGQ + +
Sbjct: 1012 LLSTRAGGLGINLATADTVVIFDSDWNPQNDLQAMSRAHRIGQQEVV 1058
>AT3G19210.2 | Symbols: RAD54 | homolog of RAD54 |
chr3:6652799-6658876 REVERSE LENGTH=908
Length = 908
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 66 FQRDGSAKGIVFSEFTSFLDLINYSLVKSGVSCVQLNGCMSLTAA---IKRFNDDPDCKF 122
+R + ++ S +T LDL + ++L+G +++ + R ND +F
Sbjct: 544 LRRKTDDRIVLVSNYTQTLDLFAQLCRERRYPFLRLDGSTTISKRQKLVNRLNDPTKDEF 603
Query: 123 -FLLSLKAAGVALNLTVASHVFLMEPWWNPDAEQQAQDRIHRIGQNKPI 170
FLLS KA G LNL A+ + L +P WNP ++QA R+ R GQ K +
Sbjct: 604 AFLLSSKAGGCGLNLIGANRLVLFDPDWNPANDKQAAARVWRDGQKKRV 652
>AT3G19210.1 | Symbols: ATRAD54, CHR25, RAD54 | homolog of RAD54 |
chr3:6652799-6658876 REVERSE LENGTH=910
Length = 910
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 66 FQRDGSAKGIVFSEFTSFLDLINYSLVKSGVSCVQLNGCMSLTAA---IKRFNDDPDCKF 122
+R + ++ S +T LDL + ++L+G +++ + R ND +F
Sbjct: 546 LRRKTDDRIVLVSNYTQTLDLFAQLCRERRYPFLRLDGSTTISKRQKLVNRLNDPTKDEF 605
Query: 123 -FLLSLKAAGVALNLTVASHVFLMEPWWNPDAEQQAQDRIHRIGQNKPI 170
FLLS KA G LNL A+ + L +P WNP ++QA R+ R GQ K +
Sbjct: 606 AFLLSSKAGGCGLNLIGANRLVLFDPDWNPANDKQAAARVWRDGQKKRV 654
>AT1G05490.1 | Symbols: chr31 | chromatin remodeling 31 |
chr1:1618795-1623195 REVERSE LENGTH=1410
Length = 1410
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 51/105 (48%), Gaps = 9/105 (8%)
Query: 73 KGIVFSEFTSFLDLINYSLV-----KSGVSCVQLNGCMS---LTAAIKRFND-DPDCKFF 123
K +VFS++ L LI LV G + ++G + I FND K F
Sbjct: 1217 KVLVFSQYIDPLKLIMKHLVSRFKWNPGEEVLYMHGKLEQKQRQTLINEFNDPKSKAKVF 1276
Query: 124 LLSLKAAGVALNLTVASHVFLMEPWWNPDAEQQAQDRIHRIGQNK 168
L S KA ++L AS V L++ WNP E+QA R +RIGQ +
Sbjct: 1277 LASTKACSEGISLVGASRVILLDVVWNPAVERQAISRAYRIGQKR 1321
>AT5G07810.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / HNH endonuclease
domain-containing protein | chr5:2491412-2498484 REVERSE
LENGTH=1190
Length = 1190
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 6/110 (5%)
Query: 71 SAKGIVFSEFTSFLDLINYSLVKSGVSCVQLNGCM---SLTAAIKRFNDDPDCKFFLLSL 127
S K +VF+ LD I + G+ V+++G A++ F + K ++ +
Sbjct: 554 STKMVVFAHHHKVLDGIQEFICDKGIGFVRIDGTTLPRDRQLAVQSFQFSSEVKIAIIGV 613
Query: 128 KAAGVALNLTVASHVFLMEPWWNPDAEQQAQDRIHRIGQNKPIR---FCA 174
+A GV L+ + A +V +E P QA+DR HR GQ + FCA
Sbjct: 614 EAGGVGLDFSAAQNVVFLELPKTPSLLLQAEDRAHRRGQTSAVNVYIFCA 663