Miyakogusa Predicted Gene
- Lj3g3v2910770.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v2910770.1 Non Chatacterized Hit- tr|I1LU44|I1LU44_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.13965 PE,51.96,0,P-loop
containing nucleoside triphosphate hydrolases,NULL; DEAD-like
helicases superfamily,Helicase,,CUFF.44953.1
(319 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G05120.1 | Symbols: | Helicase protein with RING/U-box domai... 286 2e-77
AT1G02670.1 | Symbols: | P-loop containing nucleoside triphosph... 203 1e-52
AT1G61140.3 | Symbols: EDA16 | SNF2 domain-containing protein / ... 141 7e-34
AT1G61140.1 | Symbols: EDA16 | SNF2 domain-containing protein / ... 141 7e-34
AT1G61140.2 | Symbols: EDA16 | SNF2 domain-containing protein / ... 140 8e-34
AT1G11100.1 | Symbols: | SNF2 domain-containing protein / helic... 139 4e-33
AT1G11100.2 | Symbols: | SNF2 domain-containing protein / helic... 134 8e-32
AT3G16600.1 | Symbols: | SNF2 domain-containing protein / helic... 133 1e-31
AT1G50410.1 | Symbols: | SNF2 domain-containing protein / helic... 125 5e-29
AT5G43530.1 | Symbols: | Helicase protein with RING/U-box domai... 122 4e-28
AT5G22750.1 | Symbols: RAD5 | DNA/RNA helicase protein | chr5:75... 121 5e-28
AT5G05130.1 | Symbols: | DNA/RNA helicase protein | chr5:151217... 110 9e-25
AT3G54280.2 | Symbols: RGD3 | DNA binding;ATP binding;nucleic ac... 105 5e-23
AT3G54280.1 | Symbols: CHR16, CHA16, RGD3, ATBTAF1, BTAF1 | DNA ... 105 6e-23
AT3G20010.1 | Symbols: | SNF2 domain-containing protein / helic... 99 5e-21
AT5G66750.1 | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDD... 80 2e-15
AT3G57300.1 | Symbols: INO80, ATINO80 | INO80 ortholog | chr3:21... 76 3e-14
AT3G06400.3 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 76 4e-14
AT3G06400.2 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 76 4e-14
AT3G06400.1 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 76 4e-14
AT5G63950.1 | Symbols: CHR24 | chromatin remodeling 24 | chr5:25... 75 6e-14
AT1G03750.1 | Symbols: CHR9 | switch 2 | chr1:937920-941068 FORW... 74 1e-13
AT5G18620.1 | Symbols: CHR17 | chromatin remodeling factor17 | c... 74 1e-13
AT5G18620.2 | Symbols: CHR17 | chromatin remodeling factor17 | c... 74 1e-13
AT2G28290.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 74 1e-13
AT2G28290.1 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 74 1e-13
AT2G28290.3 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 74 2e-13
AT2G40770.1 | Symbols: | zinc ion binding;DNA binding;helicases... 72 4e-13
AT3G57300.2 | Symbols: INO80 | INO80 ortholog | chr3:21199612-21... 72 7e-13
AT2G02090.1 | Symbols: CHR19, CHA19, ETL1 | SNF2 domain-containi... 69 4e-12
AT2G44980.1 | Symbols: | SNF2 domain-containing protein / helic... 67 2e-11
AT2G44980.2 | Symbols: | SNF2 domain-containing protein / helic... 67 2e-11
AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin re... 64 1e-10
AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containi... 64 1e-10
AT4G31900.1 | Symbols: PKR2 | chromatin remodeling factor, putat... 64 2e-10
AT2G13370.1 | Symbols: CHR5 | chromatin remodeling 5 | chr2:5544... 63 2e-10
AT4G31900.2 | Symbols: PKR2 | chromatin remodeling factor, putat... 63 2e-10
AT5G44800.1 | Symbols: CHR4, PKR1 | chromatin remodeling 4 | chr... 59 6e-09
>AT1G05120.1 | Symbols: | Helicase protein with RING/U-box domain |
chr1:1471624-1476067 REVERSE LENGTH=833
Length = 833
Score = 286 bits (731), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 161/351 (45%), Positives = 198/351 (56%), Gaps = 78/351 (22%)
Query: 17 LTVETAEPSSDLTVPLLRYQKEWLAWGLNQENSPVRGGILADEMGMGKTIQAIALVLAKR 76
+ ETAEP SDL +PLLRYQKE+LAW QE S V GGILADEMGMGKTIQAI+LVLA+R
Sbjct: 124 VIAETAEPPSDLIMPLLRYQKEFLAWATKQEQS-VAGGILADEMGMGKTIQAISLVLARR 182
Query: 77 Q-DLRQTGREIEHEWVPSTSSPFVTVLPAIKGTLVVCPPVAVSHWVNEIDRFTSEGSTEV 135
+ D Q G A TLV+CP VAVS W+NEI RFTS GST+V
Sbjct: 183 EVDRAQFGE-------------------AAGCTLVLCPLVAVSQWLNEIARFTSPGSTKV 223
Query: 136 LVYHGIDLVKPRDQFSKFDFVITTYSIVQSECKTAMS----ECLYCG------------K 179
LVYHG K +F +DFV+TTYS V+SE + + +C YC +
Sbjct: 224 LVYHGAKRAKNIKEFMNYDFVLTTYSTVESEYRRNIMPSKVQCAYCSKSFYPKKLVIHLR 283
Query: 180 VFLEPN-------SRQDHVCRPDVRAER-------------------------------- 200
F P+ S+Q D +++
Sbjct: 284 YFCGPSAVKTAKQSKQKRKKTSDSSSQQGKEADAGEDKKLKKSKKKTKQTVEKDQLGSDD 343
Query: 201 --QPLLHAVKWQRIVLDEAHYIKDIDDSTTEAVLALESSYKWTLSGTPLQNNVGELYSLV 258
+ LLH+VKW RI+LDEAHYIK+ +T AV ALE++Y+W LSGTPLQN VGELYSL+
Sbjct: 344 KEKSLLHSVKWNRIILDEAHYIKERRSNTARAVFALEATYRWALSGTPLQNRVGELYSLI 403
Query: 259 RFLQVTPYSYLLCKDCDCKILEKERNEKCSKCSHGTSRHFSWWIKYIVHKI 309
RFLQ+ PYSY CKDCDC+IL+ ++ C C H RHF WW KY+ I
Sbjct: 404 RFLQIRPYSYYFCKDCDCRILDYVAHQSCPHCPHNAVRHFCWWNKYVAKPI 454
>AT1G02670.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:576046-580299
FORWARD LENGTH=678
Length = 678
Score = 203 bits (516), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 114/244 (46%), Positives = 144/244 (59%), Gaps = 42/244 (17%)
Query: 17 LTVETAEPSSDLTVPLLRYQKEWLAWGLNQENSPVRGGILADEMGMGKTIQAIALVLAKR 76
+ E AE DL +PLL+YQKE+LAW QE S VRGGILADEMGMGKTIQAI+LVLA+R
Sbjct: 119 VIAEAAEQPLDLIIPLLKYQKEFLAWATIQELSAVRGGILADEMGMGKTIQAISLVLARR 178
Query: 77 QDLRQTGREIEHEWVPSTSSPFVTVLPAIKGTLVVCPPVAVSHWVNEIDRFTSEGSTEVL 136
+ R RE A+ TLV+ PPVA+S W++EI R TS GST VL
Sbjct: 179 EVDRAKSRE------------------AVGHTLVLVPPVALSQWLDEISRLTSPGSTRVL 220
Query: 137 VYHGIDLVKPRDQFSKFDFVITTYSIVQSECKTAMSECLYCGKVFLEPNSRQDHVCRPDV 196
YHG K + +DFV+TT IV++E + + D P
Sbjct: 221 QYHGPKRDKNVQKLMNYDFVLTTSPIVENEYRK---------------DEGVDETMSP-- 263
Query: 197 RAERQPLLHAVKWQRIVLDEAHYIKDIDDSTTEAVLALESSYKWTLSGTPLQNNVGELYS 256
LH++KW RI++DEAH IK+ T +AV ALE++Y+W LSGTPLQN+V ELYS
Sbjct: 264 -------LHSIKWNRIIVDEAHDIKNRSSRTAKAVFALEATYRWALSGTPLQNDVDELYS 316
Query: 257 LVRF 260
LV +
Sbjct: 317 LVSY 320
>AT1G61140.3 | Symbols: EDA16 | SNF2 domain-containing protein /
helicase domain-containing protein / zinc finger
protein-related | chr1:22535038-22539756 REVERSE
LENGTH=1122
Length = 1122
Score = 141 bits (355), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 109/316 (34%), Positives = 150/316 (47%), Gaps = 62/316 (19%)
Query: 15 EELTVETAE---PSSDLTVPLLRYQKEWLAWGLNQENS--PVRGGILADEMGMGKTIQAI 69
++LT +E P LTVPLLR+Q+ L+W +E S P GGILAD+ G+GKT+ I
Sbjct: 378 QDLTQPNSEAILPDGVLTVPLLRHQRIALSWMAQKETSGFPCSGGILADDQGLGKTVSTI 437
Query: 70 ALVLAKRQD-------------------------LRQTGR--EIEHEWVPSTSSPF---- 98
AL+L +R L+ +GR EH + S +
Sbjct: 438 ALILKERSKPAQACEESTKKEIFDLESETGECAPLKPSGRSKHFEHSQLLSNENKVGGDS 497
Query: 99 ---VTVLPAIKGTLVVCPPVAVSHWVNEI-DRFTSEGSTEVLVYHGIDLVKPRDQFSKFD 154
VT PA GTLVVCP + W +E+ + TSE + VLVYHG K + +K+D
Sbjct: 498 VGKVTGRPA-AGTLVVCPTSVMRQWADELHKKVTSEANLSVLVYHGSSRTKDPHELAKYD 556
Query: 155 FVITTYSIVQSECK-------------------TAMSECLYCGKVFLEPNSRQDHVCRPD 195
V+TT+SIV E TA + K P+S++ +
Sbjct: 557 VVVTTFSIVSMEVPKQPLVDDEDEEKDGVHDGGTAATGFCSNKKRKYPPDSKKKGSKKKK 616
Query: 196 VRAERQPLLHAVKWQRIVLDEAHYIKDIDDSTTEAVLALESSYKWTLSGTPLQNNVGELY 255
V PL V W R+VLDEA IK+ A L + +W LSGTP+QN++ +LY
Sbjct: 617 VEFLSGPLAK-VSWFRVVLDEAQSIKNYKTQVARACWGLRAKRRWCLSGTPIQNSIDDLY 675
Query: 256 SLVRFLQVTPY-SYLL 270
S RFL+ PY SY+L
Sbjct: 676 SYFRFLKYDPYSSYVL 691
>AT1G61140.1 | Symbols: EDA16 | SNF2 domain-containing protein /
helicase domain-containing protein / zinc finger
protein-related | chr1:22535038-22540610 REVERSE
LENGTH=1280
Length = 1280
Score = 141 bits (355), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 109/316 (34%), Positives = 150/316 (47%), Gaps = 62/316 (19%)
Query: 15 EELTVETAE---PSSDLTVPLLRYQKEWLAWGLNQENS--PVRGGILADEMGMGKTIQAI 69
++LT +E P LTVPLLR+Q+ L+W +E S P GGILAD+ G+GKT+ I
Sbjct: 536 QDLTQPNSEAILPDGVLTVPLLRHQRIALSWMAQKETSGFPCSGGILADDQGLGKTVSTI 595
Query: 70 ALVLAKRQD-------------------------LRQTGRE--IEHEWVPSTSSPF---- 98
AL+L +R L+ +GR EH + S +
Sbjct: 596 ALILKERSKPAQACEESTKKEIFDLESETGECAPLKPSGRSKHFEHSQLLSNENKVGGDS 655
Query: 99 ---VTVLPAIKGTLVVCPPVAVSHWVNEI-DRFTSEGSTEVLVYHGIDLVKPRDQFSKFD 154
VT PA GTLVVCP + W +E+ + TSE + VLVYHG K + +K+D
Sbjct: 656 VGKVTGRPA-AGTLVVCPTSVMRQWADELHKKVTSEANLSVLVYHGSSRTKDPHELAKYD 714
Query: 155 FVITTYSIVQSECK-------------------TAMSECLYCGKVFLEPNSRQDHVCRPD 195
V+TT+SIV E TA + K P+S++ +
Sbjct: 715 VVVTTFSIVSMEVPKQPLVDDEDEEKDGVHDGGTAATGFCSNKKRKYPPDSKKKGSKKKK 774
Query: 196 VRAERQPLLHAVKWQRIVLDEAHYIKDIDDSTTEAVLALESSYKWTLSGTPLQNNVGELY 255
V PL V W R+VLDEA IK+ A L + +W LSGTP+QN++ +LY
Sbjct: 775 VEFLSGPLAK-VSWFRVVLDEAQSIKNYKTQVARACWGLRAKRRWCLSGTPIQNSIDDLY 833
Query: 256 SLVRFLQVTPY-SYLL 270
S RFL+ PY SY+L
Sbjct: 834 SYFRFLKYDPYSSYVL 849
>AT1G61140.2 | Symbols: EDA16 | SNF2 domain-containing protein /
helicase domain-containing protein / zinc finger
protein-related | chr1:22536293-22540610 REVERSE
LENGTH=1022
Length = 1022
Score = 140 bits (354), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 109/316 (34%), Positives = 150/316 (47%), Gaps = 62/316 (19%)
Query: 15 EELTVETAE---PSSDLTVPLLRYQKEWLAWGLNQENS--PVRGGILADEMGMGKTIQAI 69
++LT +E P LTVPLLR+Q+ L+W +E S P GGILAD+ G+GKT+ I
Sbjct: 543 QDLTQPNSEAILPDGVLTVPLLRHQRIALSWMAQKETSGFPCSGGILADDQGLGKTVSTI 602
Query: 70 ALVLAKRQD-------------------------LRQTGRE--IEHEWVPSTSSPF---- 98
AL+L +R L+ +GR EH + S +
Sbjct: 603 ALILKERSKPAQACEESTKKEIFDLESETGECAPLKPSGRSKHFEHSQLLSNENKVGGDS 662
Query: 99 ---VTVLPAIKGTLVVCPPVAVSHWVNEI-DRFTSEGSTEVLVYHGIDLVKPRDQFSKFD 154
VT PA GTLVVCP + W +E+ + TSE + VLVYHG K + +K+D
Sbjct: 663 VGKVTGRPA-AGTLVVCPTSVMRQWADELHKKVTSEANLSVLVYHGSSRTKDPHELAKYD 721
Query: 155 FVITTYSIVQSECK-------------------TAMSECLYCGKVFLEPNSRQDHVCRPD 195
V+TT+SIV E TA + K P+S++ +
Sbjct: 722 VVVTTFSIVSMEVPKQPLVDDEDEEKDGVHDGGTAATGFCSNKKRKYPPDSKKKGSKKKK 781
Query: 196 VRAERQPLLHAVKWQRIVLDEAHYIKDIDDSTTEAVLALESSYKWTLSGTPLQNNVGELY 255
V PL V W R+VLDEA IK+ A L + +W LSGTP+QN++ +LY
Sbjct: 782 VEFLSGPLAK-VSWFRVVLDEAQSIKNYKTQVARACWGLRAKRRWCLSGTPIQNSIDDLY 840
Query: 256 SLVRFLQVTPY-SYLL 270
S RFL+ PY SY+L
Sbjct: 841 SYFRFLKYDPYSSYVL 856
>AT1G11100.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr1:3703934-3709302 REVERSE LENGTH=1226
Length = 1226
Score = 139 bits (349), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 97/268 (36%), Positives = 134/268 (50%), Gaps = 45/268 (16%)
Query: 20 ETAEPSSDLTVPLLRYQKEWLAWGLNQENS--PVRGGILADEMGMGKTIQAIALVLAKR- 76
E + P L V LLR+Q+ L+W +E S P GGILAD+ G+GKT+ IAL+L +R
Sbjct: 530 EASPPDGVLAVSLLRHQRIALSWMSQKETSGNPCFGGILADDQGLGKTVSTIALILTERS 589
Query: 77 -------QDLRQTG-REIEHEWVPSTSSPFV-------TVLPAIKGTLVVCPPVAVSHWV 121
+D + G + +H V + V PA GTL+VCP + W
Sbjct: 590 TPYLPCEEDSKNGGCNQSDHSQVVFNENKVVEDSLCKMRGRPA-AGTLIVCPTSLMRQWA 648
Query: 122 NEI-DRFTSEGSTEVLVYHGIDLVKPRDQFSKFDFVITTYSIVQSECKTAMSECLYCGKV 180
+E+ + T E VLVYHG K + +K+D VITTYS+V
Sbjct: 649 DELRKKVTLEAHLSVLVYHGCSRTKDPHELAKYDVVITTYSLV----------------- 691
Query: 181 FLEPNSRQDHV-CRPDVRAERQPLLHAVKWQRIVLDEAHYIKDIDDSTTEAVLALESSYK 239
S++ H+ C P V PL V W R+VLDEA IK+ + A L + +
Sbjct: 692 -----SKRKHMDCEP-VEFLSGPLAQ-VSWFRVVLDEAQSIKNYKTQASIACSGLHAKRR 744
Query: 240 WTLSGTPLQNNVGELYSLVRFLQVTPYS 267
W LSGTP+QN++ +LYS RFL+ PYS
Sbjct: 745 WCLSGTPIQNSIADLYSYFRFLKYDPYS 772
>AT1G11100.2 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr1:3703934-3709302 REVERSE LENGTH=1269
Length = 1269
Score = 134 bits (337), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 141/290 (48%), Gaps = 45/290 (15%)
Query: 20 ETAEPSSDLTVPLLRYQKEWLAWGLNQENS--PVRGGILADEMGMGKTIQAIALVLAKR- 76
E + P L V LLR+Q+ L+W +E S P GGILAD+ G+GKT+ IAL+L +R
Sbjct: 529 EASPPDGVLAVSLLRHQRIALSWMSQKETSGNPCFGGILADDQGLGKTVSTIALILTERS 588
Query: 77 -------QDLRQTG-REIEHEWVPSTSSPFV-------TVLPAIKGTLVVCPPVAVSHWV 121
+D + G + +H V + V PA GTL+VCP + W
Sbjct: 589 TPYLPCEEDSKNGGCNQSDHSQVVFNENKVVEDSLCKMRGRPA-AGTLIVCPTSLMRQWA 647
Query: 122 NEI-DRFTSEGSTEVLVYHGIDLVKPRDQFSKFDFVITTYSIVQSECKTAMSE------- 173
+E+ + T E VLVYHG K + +K+D VITTYS+V E +
Sbjct: 648 DELRKKVTLEAHLSVLVYHGCSRTKDPHELAKYDVVITTYSLVSVEVPKQPRDRADEEKG 707
Query: 174 CLYCGKV----FLE-----PNS-------RQDHVCRPDVRAERQPLLHAVKWQRIVLDEA 217
++ G V F PNS R+ C P V PL V W R+VLDEA
Sbjct: 708 GIHDGGVESVGFGSNKKDLPNSQKKGTKKRKHMDCEP-VEFLSGPLAQ-VSWFRVVLDEA 765
Query: 218 HYIKDIDDSTTEAVLALESSYKWTLSGTPLQNNVGELYSLVRFLQVTPYS 267
IK+ + A L + +W LSGTP+QN++ +LYS RFL+ PYS
Sbjct: 766 QSIKNYKTQASIACSGLHAKRRWCLSGTPIQNSIADLYSYFRFLKYDPYS 815
>AT3G16600.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr3:5652839-5655670 REVERSE LENGTH=638
Length = 638
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 89/250 (35%), Positives = 131/250 (52%), Gaps = 29/250 (11%)
Query: 24 PSSDLTVPLLRYQKEWLAWGLNQENSPVR--GGILADEMGMGKTIQAIALVLAKRQDLRQ 81
P LTVPL+R+QK L W +E GGILAD+ G+GKTI I+L+L Q L+
Sbjct: 45 PPGVLTVPLMRHQKIALNWMRKKEKRSRHCLGGILADDQGLGKTISTISLILL--QKLKS 102
Query: 82 TGREIEHEWVPSTSSPFVTVLPAIKGTLVVCPPVAVSHWVNEI-DRFTSEGSTEVLVYHG 140
++ + + S GTL+VCP V W E+ ++ + E VLV+HG
Sbjct: 103 QSKQRKRKGQNSG------------GTLIVCPASVVKQWAREVKEKVSDEHKLSVLVHHG 150
Query: 141 IDLVKPRDQFSKFDFVITTYSIVQSECKTAMSECLY---CGKVFLEPNSRQDHVCRPDVR 197
K + + +D V+TTY+IV +E Y G+ L+ +S + +P V
Sbjct: 151 SHRTKDPTEIAIYDVVMTTYAIVTNEVPQNPMLNRYDSMRGRESLDGSS----LIQPHVG 206
Query: 198 AERQPLLHAVKWQRIVLDEAHYIKDIDDSTTEAVLALESSYKWTLSGTPLQNNVGELYSL 257
A L V+W R+VLDEAH IK+ +A +L + +W L+GTP++N V +LYS
Sbjct: 207 A-----LGRVRWLRVVLDEAHTIKNHRTLIAKACFSLRAKRRWCLTGTPIKNKVDDLYSY 261
Query: 258 VRFLQVTPYS 267
RFL+ PY+
Sbjct: 262 FRFLRYHPYA 271
>AT1G50410.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr1:18672828-18677365 FORWARD LENGTH=981
Length = 981
Score = 125 bits (313), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 95/316 (30%), Positives = 136/316 (43%), Gaps = 76/316 (24%)
Query: 24 PSSDLTVPLLRYQKEWLAWGLNQENSPVR--GGILADEMGMGKTIQAIALVL-----AKR 76
P+ L+VPL+++QK LAW +E + + GGILAD+ G+GKT+ IAL+L AK
Sbjct: 218 PAGLLSVPLMKHQKIALAWMFQKETNSLHCMGGILADDQGLGKTVSTIALILKQMHEAKL 277
Query: 77 QDLRQTGREIE-------------------------------------HEWVPSTSSPFV 99
+ +E E E +++ F
Sbjct: 278 KSKNSGNQEAEALDLDADDESENAFEKPESKASNGSGVNGDSGIKKAKGEEASTSTRKFN 337
Query: 100 TVLPAIKGTLVVCPPVAVSHWVNEID-RFTSEGSTEVLVYHGIDLVKPRDQFSKFDFVIT 158
PA GTL+VCP V W E+D + T E VL+YHG + K + +K+D V+T
Sbjct: 338 RKRPAA-GTLIVCPASVVRQWARELDEKVTDEAKLSVLIYHGGNRTKDPIELAKYDVVMT 396
Query: 159 TYSIVQSEC-------------KTAMSECLYCGKVFLEPNSRQDHVC------------- 192
TY+IV +E K + L G N ++ +V
Sbjct: 397 TYAIVSNEVPKQPLVDDDENDEKNSEKYGLASG---FSINKKRKNVVGTTKKSKKKKGNN 453
Query: 193 -RPDVRAERQPLLHAVKWQRIVLDEAHYIKDIDDSTTEAVLALESSYKWTLSGTPLQNNV 251
D L V W R+VLDEA IK+ A L + +W LSGTP+QN +
Sbjct: 454 NAGDSSDPDSGTLAKVGWFRVVLDEAQTIKNHRTQVARACCGLRAKRRWCLSGTPIQNTI 513
Query: 252 GELYSLVRFLQVTPYS 267
+LYS RFL+ PY+
Sbjct: 514 DDLYSYFRFLKYDPYA 529
>AT5G43530.1 | Symbols: | Helicase protein with RING/U-box domain |
chr5:17489327-17494830 FORWARD LENGTH=1277
Length = 1277
Score = 122 bits (306), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 109/227 (48%), Gaps = 46/227 (20%)
Query: 52 RGGILADEMGMGKTIQAIALVLAKRQDLRQTGR---EIEHEWVPSTSSP---------FV 99
RGGILAD MG+GKT+ IAL+LA+ GR E E V ++ +
Sbjct: 681 RGGILADAMGLGKTVMTIALILAR------PGRGNPENEDVLVADVNADKRNRKEIHMAL 734
Query: 100 TVLPAIKGTLVVCPPVAVSHWVNEIDRFTSEGSTEVLVYHGIDLVKPRDQFSKFDFVITT 159
T + A GTL++CP +S W +E++ + + VLVY+G D + D V+TT
Sbjct: 735 TTVKAKGGTLIICPMALLSQWKDELETHSKPDTVSVLVYYGGDRTHDAKAIASHDVVLTT 794
Query: 160 YSIVQSECKTAMSECLYCGKVFLEPNSRQDHVCRPDVRAERQPLLHAVKWQRIVLDEAHY 219
Y ++ S K M+ ++ H + W RIVLDEAH
Sbjct: 795 YGVLTSAYKQDMANSIF----------------------------HRIDWYRIVLDEAHT 826
Query: 220 IKDIDDSTTEAVLALESSYKWTLSGTPLQNNVGELYSLVRFLQVTPY 266
IK +A L S +W L+GTPLQN + +LYSL+ FL V P+
Sbjct: 827 IKSWKTQAAKATFELSSHCRWCLTGTPLQNKLEDLYSLLCFLHVEPW 873
>AT5G22750.1 | Symbols: RAD5 | DNA/RNA helicase protein |
chr5:7565374-7570871 REVERSE LENGTH=1029
Length = 1029
Score = 121 bits (304), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 86/239 (35%), Positives = 117/239 (48%), Gaps = 49/239 (20%)
Query: 51 VRGGILADEMGMGKTIQAIALVLAKRQDLRQTG---REIEHEWVPSTSSPFVTVLP--AI 105
RGGILAD MG+GKT+ I+L+LA TG E + V S+S +T P A
Sbjct: 412 ARGGILADAMGLGKTVMTISLLLAHSWKAASTGFLCPNYEGDKVISSSVDDLTSPPVKAT 471
Query: 106 K------------------GTLVVCPPVAVSHWVNEIDRFTSEGSTEVLVYHGIDLVKPR 147
K G L+VCP + W EI+ GS V V++G K
Sbjct: 472 KFLGFDKRLLEQKSVLQNGGNLIVCPMTLLGQWKTEIEMHAKPGSLSVYVHYGQSRPKDA 531
Query: 148 DQFSKFDFVITTYSIVQSECKTAMSECLYCGKVFLEPNSRQDHVCRPDVRAERQPLLHAV 207
S+ D VITTY ++ SE F + NS DH ++AV
Sbjct: 532 KLLSQSDVVITTYGVLTSE--------------FSQENS-ADHEG-----------IYAV 565
Query: 208 KWQRIVLDEAHYIKDIDDSTTEAVLALESSYKWTLSGTPLQNNVGELYSLVRFLQVTPY 266
+W RIVLDEAH IK+ + A AL + +W L+GTP+QNN+ +LYSL+RFL++ P+
Sbjct: 566 RWFRIVLDEAHTIKNSKSQISLAAAALVADRRWCLTGTPIQNNLEDLYSLLRFLRIEPW 624
>AT5G05130.1 | Symbols: | DNA/RNA helicase protein |
chr5:1512173-1514918 FORWARD LENGTH=862
Length = 862
Score = 110 bits (276), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 84/300 (28%), Positives = 134/300 (44%), Gaps = 84/300 (28%)
Query: 22 AEPSSD-LTVPLLRYQKEWLAWGLNQENS----------------------------PVR 52
AEP + + L +QKE L W L++E S P+R
Sbjct: 201 AEPPREVIKSELFAHQKEGLGWLLHREKSGELPPFWEEKDGEFLNTLTNYRSDKRPDPLR 260
Query: 53 GGILADEMGMGKTIQAIALVLAKR-----------QDLRQTGREIEHEWVPST---SSPF 98
GG+ AD+MG+GKT+ ++L+ R + L G +IE + SS
Sbjct: 261 GGVFADDMGLGKTLTLLSLIAFDRYGNASTSTPTEEPLDGEGDKIEKKGKKRGRGKSSES 320
Query: 99 VT-----------VLPAIKGTLVVCPPVAVSHWVNEIDRFTSEGSTEVLVYHGIDLVKPR 147
VT + + K TL+VCPP +S W+ +++ T G +V +YHG +
Sbjct: 321 VTRKKLKTDDVVGMNVSQKTTLIVCPPSVISAWITQLEEHTVPGILKVYMYHGGERTDDV 380
Query: 148 DQFSKFDFVITTYSIVQSECKTAMSECLYCGKVFLEPNSRQDHVCRPDVRAERQPLLHAV 207
++ K+D V+TTY + E S +D + +
Sbjct: 381 NELMKYDIVLTTYGTLAVE------------------ESWEDSPVK------------KM 410
Query: 208 KWQRIVLDEAHYIKDIDDSTTEAVLALESSYKWTLSGTPLQNNVGELYSLVRFLQVTPYS 267
+W RI+LDEAH IK+ + + V L++S +W ++GTP+QN +LYSL+ FL+ P+S
Sbjct: 411 EWLRIILDEAHTIKNANAQQSRVVCKLKASRRWAVTGTPIQNGSFDLYSLMAFLRFEPFS 470
>AT3G54280.2 | Symbols: RGD3 | DNA binding;ATP binding;nucleic acid
binding;binding;helicases;ATP binding;DNA
binding;helicases | chr3:20092361-20104153 FORWARD
LENGTH=2129
Length = 2129
Score = 105 bits (261), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 110/238 (46%), Gaps = 54/238 (22%)
Query: 26 SDLTVPLLRYQKEWLAWGLNQENSPVRGGILADEMGMGKTIQAIALVLAKRQDLRQTGRE 85
++L V L RYQ+E + W L GIL D+MG+GKT+QA A+V + + R + E
Sbjct: 1476 TELKVQLRRYQQEGINW-LGFLKRFKLHGILCDDMGLGKTLQASAIVASDAAERRGSTDE 1534
Query: 86 IEHEWVPSTSSPFVTVLPAIKGTLVVCPPVAVSHWVNEIDRFTSEGSTEVLVYHGI--DL 143
++ V P+I +VCP V HW EI+++ VL Y G D
Sbjct: 1535 LD-------------VFPSI----IVCPSTLVGHWAFEIEKYIDLSLLSVLQYVGSAQDR 1577
Query: 144 VKPRDQFSKFDFVITTYSIVQSECKTAMSECLYCGKVFLEPNSRQDHVCRPDVRAERQPL 203
V R+QF+ + +IT+Y +V R DV
Sbjct: 1578 VSLREQFNNHNVIITSYDVV-----------------------------RKDV-----DY 1603
Query: 204 LHAVKWQRIVLDEAHYIKDIDDSTTEAVLALESSYKWTLSGTPLQNNVGELYSLVRFL 261
L W +LDE H IK+ T AV L++ ++ LSGTP+QNN+ EL+SL FL
Sbjct: 1604 LTQFSWNYCILDEGHIIKNAKSKITAAVKQLKAQHRLILSGTPIQNNIMELWSLFDFL 1661
>AT3G54280.1 | Symbols: CHR16, CHA16, RGD3, ATBTAF1, BTAF1 | DNA
binding;ATP binding;nucleic acid
binding;binding;helicases;ATP binding;DNA
binding;helicases | chr3:20092361-20103807 FORWARD
LENGTH=2045
Length = 2045
Score = 105 bits (261), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 110/238 (46%), Gaps = 54/238 (22%)
Query: 26 SDLTVPLLRYQKEWLAWGLNQENSPVRGGILADEMGMGKTIQAIALVLAKRQDLRQTGRE 85
++L V L RYQ+E + W L GIL D+MG+GKT+QA A+V + + R + E
Sbjct: 1445 TELKVQLRRYQQEGINW-LGFLKRFKLHGILCDDMGLGKTLQASAIVASDAAERRGSTDE 1503
Query: 86 IEHEWVPSTSSPFVTVLPAIKGTLVVCPPVAVSHWVNEIDRFTSEGSTEVLVYHGI--DL 143
++ V P+I +VCP V HW EI+++ VL Y G D
Sbjct: 1504 LD-------------VFPSI----IVCPSTLVGHWAFEIEKYIDLSLLSVLQYVGSAQDR 1546
Query: 144 VKPRDQFSKFDFVITTYSIVQSECKTAMSECLYCGKVFLEPNSRQDHVCRPDVRAERQPL 203
V R+QF+ + +IT+Y +V R DV
Sbjct: 1547 VSLREQFNNHNVIITSYDVV-----------------------------RKDV-----DY 1572
Query: 204 LHAVKWQRIVLDEAHYIKDIDDSTTEAVLALESSYKWTLSGTPLQNNVGELYSLVRFL 261
L W +LDE H IK+ T AV L++ ++ LSGTP+QNN+ EL+SL FL
Sbjct: 1573 LTQFSWNYCILDEGHIIKNAKSKITAAVKQLKAQHRLILSGTPIQNNIMELWSLFDFL 1630
>AT3G20010.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr3:6971352-6976340 FORWARD LENGTH=1047
Length = 1047
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 96/206 (46%), Gaps = 26/206 (12%)
Query: 87 EHEWVPSTSSPFVTVLPAIKGTLVVCPPVAVSHWVNEIDRFTSEGST-EVLVYHGIDLVK 145
E E S++ F PA GTL+VCP V W E+D SE S VLVYHG + K
Sbjct: 396 EDEEANSSTRAFQWKRPAA-GTLIVCPASVVRQWARELDEKVSEESKLSVLVYHGSNRTK 454
Query: 146 PRDQFSKFDFVITTYSIVQSECKTAM----------SECLYCGKVFLEPNSRQDHVCRPD 195
++ +++D V+TTY+IV +E + Y N ++ V
Sbjct: 455 DPNELAEYDVVVTTYAIVTNEAPNKFLVDEDENDEKNTDRYGLASGFSNNKKRKVVVGAS 514
Query: 196 VRAERQPL--------------LHAVKWQRIVLDEAHYIKDIDDSTTEAVLALESSYKWT 241
+++R+ L V W RIVLDEA IK+ + L + +W
Sbjct: 515 KKSKRRGRKSTNDTSSEPDCGPLGKVGWFRIVLDEAQTIKNYRTQMARSCCTLRAKRRWC 574
Query: 242 LSGTPLQNNVGELYSLVRFLQVTPYS 267
LSGTP+QN + +LYS RFL+ PY+
Sbjct: 575 LSGTPIQNTIDDLYSYFRFLRYDPYA 600
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 19 VETAEPSSDLTVPLLRYQKEWLAWGLNQENSPVR--GGILADEMGMGKTIQAIALVLAKR 76
E+ P L+VPL+R+QK LAW +E S GGILAD+ G+GKT+ IAL+L ++
Sbjct: 268 TESDLPPGTLSVPLMRHQKIALAWMFQKETSSFNCPGGILADDQGLGKTVSTIALILKQK 327
>AT5G66750.1 | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1
| chromatin remodeling 1 | chr5:26649050-26652869
FORWARD LENGTH=764
Length = 764
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 91/217 (41%), Gaps = 67/217 (30%)
Query: 53 GGILADEMGMGKTIQAIALVLAKRQDLRQTGREIEHEWVPSTSSPFVTVLPAIKGTLVVC 112
GILAD+MG+GKTIQ I + L+ G + P+ LV+
Sbjct: 222 NGILADQMGLGKTIQTIGFL----SHLKGNGLD----------GPY----------LVIA 257
Query: 113 PPVAVSHWVNEIDRFTSEGSTEVLVYHGIDLVK--------PRDQFSKFDFVITTYSIVQ 164
P +S+W NEI RFT S ++YHG + P+ KF VIT+Y +
Sbjct: 258 PLSTLSNWFNEIARFTP--SINAIIYHGDKNQRDELRRKHMPKTVGPKFPIVITSYEVAM 315
Query: 165 SECKTAMSECLYCGKVFLEPNSRQDHVCRPDVRAERQPLLHAVKWQRIVLDEAHYIKDID 224
++ K +L W+ +V+DE H +K+
Sbjct: 316 NDAKR---------------------------------ILRHYPWKYVVIDEGHRLKNHK 342
Query: 225 DSTTEAVLALESSYKWTLSGTPLQNNVGELYSLVRFL 261
+ L+ K L+GTPLQNN+ EL+SL+ F+
Sbjct: 343 CKLLRELKHLKMDNKLLLTGTPLQNNLSELWSLLNFI 379
>AT3G57300.1 | Symbols: INO80, ATINO80 | INO80 ortholog |
chr3:21199612-21207635 FORWARD LENGTH=1507
Length = 1507
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 104/241 (43%), Gaps = 71/241 (29%)
Query: 32 LLRYQKEWLAWGLNQENSPVRGGILADEMGMGKTIQAIALV--LAKRQDLRQTGREIEHE 89
L YQ + L W +N + GILADEMG+GKTIQA+A + LA+ +++
Sbjct: 586 LKEYQMKGLQWLVNCYEQGL-NGILADEMGLGKTIQAMAFLAHLAEEKNI---------- 634
Query: 90 WVPSTSSPFVTVLPAIKGTLVVCPPVAVSHWVNEIDRFTSEGST---------EVLVYHG 140
W PF LVV P +++W +EI RF + T ++
Sbjct: 635 W-----GPF----------LVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERTILRKN 679
Query: 141 IDLVKPRDQFSKFDFVITTYSIVQSECKTAMSECLYCGKVFLEPNSRQDHVCRPDVRAER 200
I+ + + + F +IT+Y ++ ++ K
Sbjct: 680 INPKRMYRRDAGFHILITSYQLLVTDEK-------------------------------- 707
Query: 201 QPLLHAVKWQRIVLDEAHYIKDIDDSTTEAVLALESSYKWTLSGTPLQNNVGELYSLVRF 260
VKWQ +VLDEA IK + +L+ + L+GTP+QNN+ EL++L+ F
Sbjct: 708 --YFRRVKWQYMVLDEAQAIKSSSSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHF 765
Query: 261 L 261
+
Sbjct: 766 I 766
>AT3G06400.3 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1057
Length = 1057
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 111/265 (41%), Gaps = 77/265 (29%)
Query: 5 DASAGAGNGKEELTVETAEPSSDLTVPLLRYQKEWLAWGLNQENSPVRGGILADEMGMGK 64
D G+GN T +PS + + YQ L W + + + GILADEMG+GK
Sbjct: 168 DGLTGSGN-----TRLLTQPSC-IQGKMRDYQLAGLNWLIRLYENGI-NGILADEMGLGK 220
Query: 65 TIQAIALVLAKRQDLRQTGREIEHEWVPSTSSPFVTVLPAIKGT-LVVCPPVAVSHWVNE 123
T+Q I+L+ ++ I G +VV P + +W+NE
Sbjct: 221 TLQTISLL------------------------AYLHEYRGINGPHMVVAPKSTLGNWMNE 256
Query: 124 IDRF-------TSEGSTEVLVYHGIDLVKPRDQFSKFDFVITTYSIVQSECKTAMSECLY 176
I RF G+ E + DL+ KFD +T++ + E KTA
Sbjct: 257 IRRFCPVLRAVKFLGNPEERRHIREDLLVA----GKFDICVTSFEMAIKE-KTA------ 305
Query: 177 CGKVFLEPNSRQDHVCRPDVRAERQPLLHAVKWQRIVLDEAHYIKDIDDSTTEAVLALES 236
L W+ I++DEAH IK+ + ++ + +
Sbjct: 306 ---------------------------LRRFSWRYIIIDEAHRIKNENSLLSKTMRLFST 338
Query: 237 SYKWTLSGTPLQNNVGELYSLVRFL 261
+Y+ ++GTPLQNN+ EL++L+ FL
Sbjct: 339 NYRLLITGTPLQNNLHELWALLNFL 363
>AT3G06400.2 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1056
Length = 1056
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 111/265 (41%), Gaps = 77/265 (29%)
Query: 5 DASAGAGNGKEELTVETAEPSSDLTVPLLRYQKEWLAWGLNQENSPVRGGILADEMGMGK 64
D G+GN T +PS + + YQ L W + + + GILADEMG+GK
Sbjct: 168 DGLTGSGN-----TRLLTQPSC-IQGKMRDYQLAGLNWLIRLYENGI-NGILADEMGLGK 220
Query: 65 TIQAIALVLAKRQDLRQTGREIEHEWVPSTSSPFVTVLPAIKGT-LVVCPPVAVSHWVNE 123
T+Q I+L+ ++ I G +VV P + +W+NE
Sbjct: 221 TLQTISLL------------------------AYLHEYRGINGPHMVVAPKSTLGNWMNE 256
Query: 124 IDRF-------TSEGSTEVLVYHGIDLVKPRDQFSKFDFVITTYSIVQSECKTAMSECLY 176
I RF G+ E + DL+ KFD +T++ + E KTA
Sbjct: 257 IRRFCPVLRAVKFLGNPEERRHIREDLLVA----GKFDICVTSFEMAIKE-KTA------ 305
Query: 177 CGKVFLEPNSRQDHVCRPDVRAERQPLLHAVKWQRIVLDEAHYIKDIDDSTTEAVLALES 236
L W+ I++DEAH IK+ + ++ + +
Sbjct: 306 ---------------------------LRRFSWRYIIIDEAHRIKNENSLLSKTMRLFST 338
Query: 237 SYKWTLSGTPLQNNVGELYSLVRFL 261
+Y+ ++GTPLQNN+ EL++L+ FL
Sbjct: 339 NYRLLITGTPLQNNLHELWALLNFL 363
>AT3G06400.1 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1055
Length = 1055
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 111/265 (41%), Gaps = 77/265 (29%)
Query: 5 DASAGAGNGKEELTVETAEPSSDLTVPLLRYQKEWLAWGLNQENSPVRGGILADEMGMGK 64
D G+GN T +PS + + YQ L W + + + GILADEMG+GK
Sbjct: 168 DGLTGSGN-----TRLLTQPSC-IQGKMRDYQLAGLNWLIRLYENGI-NGILADEMGLGK 220
Query: 65 TIQAIALVLAKRQDLRQTGREIEHEWVPSTSSPFVTVLPAIKGT-LVVCPPVAVSHWVNE 123
T+Q I+L+ ++ I G +VV P + +W+NE
Sbjct: 221 TLQTISLL------------------------AYLHEYRGINGPHMVVAPKSTLGNWMNE 256
Query: 124 IDRF-------TSEGSTEVLVYHGIDLVKPRDQFSKFDFVITTYSIVQSECKTAMSECLY 176
I RF G+ E + DL+ KFD +T++ + E KTA
Sbjct: 257 IRRFCPVLRAVKFLGNPEERRHIREDLLVA----GKFDICVTSFEMAIKE-KTA------ 305
Query: 177 CGKVFLEPNSRQDHVCRPDVRAERQPLLHAVKWQRIVLDEAHYIKDIDDSTTEAVLALES 236
L W+ I++DEAH IK+ + ++ + +
Sbjct: 306 ---------------------------LRRFSWRYIIIDEAHRIKNENSLLSKTMRLFST 338
Query: 237 SYKWTLSGTPLQNNVGELYSLVRFL 261
+Y+ ++GTPLQNN+ EL++L+ FL
Sbjct: 339 NYRLLITGTPLQNNLHELWALLNFL 363
>AT5G63950.1 | Symbols: CHR24 | chromatin remodeling 24 |
chr5:25592160-25598405 REVERSE LENGTH=1090
Length = 1090
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 102/234 (43%), Gaps = 55/234 (23%)
Query: 32 LLRYQKEWLAWGLNQENSPVRGGILADEMGMGKTIQAIALVLAKRQDLRQTGREIEHEWV 91
L +Q+E L W L ++ +GGIL D+MG+GKT+Q + +
Sbjct: 377 LYPHQREGLNW-LWSLHTQGKGGILGDDMGLGKTMQICSFL------------------- 416
Query: 92 PSTSSPFVTVLPAIKGTLVVCPPVAVSHWVNEIDRFTSEGSTEVLVYHGIDLVKPRDQ-- 149
+ F + L IK LVV P + HW+ E+ T S Y+G K R+
Sbjct: 417 ---AGLFHSKL--IKRALVVAPKTLLPHWMKEL--ATVGLSQMTREYYGTS-TKAREYDL 468
Query: 150 ---FSKFDFVITTYSIVQSECKTAMSECLYCGKVFLEPNSRQDHVCRPDVRAERQPLLHA 206
++TTY IV++ K + DH D
Sbjct: 469 HHILQGKGILLTTYDIVRNNTKALQGD---------------DHYTDEDDE-------DG 506
Query: 207 VKWQRIVLDEAHYIKDIDDSTTEAVLALESSYKWTLSGTPLQNNVGELYSLVRF 260
KW ++LDE H IK+ + +++L + SS++ +SGTP+QNN+ EL++L F
Sbjct: 507 NKWDYMILDEGHLIKNPNTQRAKSLLEIPSSHRIIISGTPIQNNLKELWALFNF 560
>AT1G03750.1 | Symbols: CHR9 | switch 2 | chr1:937920-941068 FORWARD
LENGTH=862
Length = 862
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 102/236 (43%), Gaps = 50/236 (21%)
Query: 32 LLRYQKEWLAWGLNQENSPVRGGILADEMGMGKTIQAIALVLAKRQDLRQTGREIEHEWV 91
LL +Q+E + + N + GGIL D+MG+GKTIQ IA + A + G E +
Sbjct: 139 LLEHQREGVKFMYNLYKNN-HGGILGDDMGLGKTIQTIAFLAAV---YGKDGDAGESCLL 194
Query: 92 PSTSSPFVTVLPAIKGTLVVCPPVAVSHWVNEIDRFTSEGSTEVLVYHGIDLVKPRDQFS 151
S P L++CP + +W +E R+ S +V VYHG
Sbjct: 195 ESDKGP----------VLIICPSSIIHNWESEFSRWAS--FFKVSVYHG----------- 231
Query: 152 KFDFVITTYSIVQSECKTAMSECLYCGKVFLEPNSRQDHVCRPDVRAERQPLLHAVKWQR 211
+ ++ + K E L V D + P+L + W+
Sbjct: 232 ------SNRDMILEKLKARGVEVL---------------VTSFDTFRIQGPVLSGINWEI 270
Query: 212 IVLDEAHYIKDIDDSTTEAVLALESSYKWTLSGTPLQNNVGELYSLVRFLQVTPYS 267
++ DEAH +K+ EA L +++ + L+GT +QN + EL++L F V P S
Sbjct: 271 VIADEAHRLKNEKSKLYEACLEIKTKKRIGLTGTVMQNKISELFNL--FEWVAPGS 324
>AT5G18620.1 | Symbols: CHR17 | chromatin remodeling factor17 |
chr5:6196190-6202058 REVERSE LENGTH=1069
Length = 1069
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 98/234 (41%), Gaps = 63/234 (26%)
Query: 32 LLRYQKEWLAWGLNQENSPVRGGILADEMGMGKTIQAIALVLAKRQDLRQTGREIEHEWV 91
L YQ L W + + + GILADEMG+GKT+Q I+L+
Sbjct: 194 LRDYQLAGLNWLIRLYENGI-NGILADEMGLGKTLQTISLL------------------- 233
Query: 92 PSTSSPFVTVLPAIKGT-LVVCPPVAVSHWVNEIDRFTSEGSTEVLVYHGIDLVKPRDQF 150
++ I G +VV P + +W+NEI RF + + + R++
Sbjct: 234 -----AYLHEYRGINGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIREEL 288
Query: 151 ---SKFDFVITTYSIVQSECKTAMSECLYCGKVFLEPNSRQDHVCRPDVRAERQPLLHAV 207
KFD +T++ + E T L
Sbjct: 289 LVAGKFDICVTSFEMAIKEKTT----------------------------------LRRF 314
Query: 208 KWQRIVLDEAHYIKDIDDSTTEAVLALESSYKWTLSGTPLQNNVGELYSLVRFL 261
W+ I++DEAH IK+ + ++ + ++Y+ ++GTPLQNN+ EL++L+ FL
Sbjct: 315 SWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFL 368
>AT5G18620.2 | Symbols: CHR17 | chromatin remodeling factor17 |
chr5:6196190-6202058 REVERSE LENGTH=1072
Length = 1072
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 98/234 (41%), Gaps = 63/234 (26%)
Query: 32 LLRYQKEWLAWGLNQENSPVRGGILADEMGMGKTIQAIALVLAKRQDLRQTGREIEHEWV 91
L YQ L W + + + GILADEMG+GKT+Q I+L+
Sbjct: 194 LRDYQLAGLNWLIRLYENGI-NGILADEMGLGKTLQTISLL------------------- 233
Query: 92 PSTSSPFVTVLPAIKGT-LVVCPPVAVSHWVNEIDRFTSEGSTEVLVYHGIDLVKPRDQF 150
++ I G +VV P + +W+NEI RF + + + R++
Sbjct: 234 -----AYLHEYRGINGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIREEL 288
Query: 151 ---SKFDFVITTYSIVQSECKTAMSECLYCGKVFLEPNSRQDHVCRPDVRAERQPLLHAV 207
KFD +T++ + E T L
Sbjct: 289 LVAGKFDICVTSFEMAIKEKTT----------------------------------LRRF 314
Query: 208 KWQRIVLDEAHYIKDIDDSTTEAVLALESSYKWTLSGTPLQNNVGELYSLVRFL 261
W+ I++DEAH IK+ + ++ + ++Y+ ++GTPLQNN+ EL++L+ FL
Sbjct: 315 SWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFL 368
>AT2G28290.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3529
Length = 3529
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 106/246 (43%), Gaps = 67/246 (27%)
Query: 23 EPSSDLTVPLLRYQKEWLAWGLNQENSPVRGGILADEMGMGKTIQAIALV--LAKRQDLR 80
+PSS + L YQ L W ++ N+ + G ILADEMG+GKT+Q I+L+ L + ++ R
Sbjct: 745 QPSSLVGGKLREYQMNGLRWLVSLYNNHLNG-ILADEMGLGKTVQVISLICYLMETKNDR 803
Query: 81 QTGREIEHEWVPSTSSPFVTVLPAIKGTLVVCPPVAVSHWVNEIDRFTSEGSTEVLVYHG 140
PF LVV P + W +EI+ + S +VY G
Sbjct: 804 ---------------GPF----------LVVVPSSVLPGWQSEINFWAP--SIHKIVYCG 836
Query: 141 I-----DLVKPRDQFSKFDFVITTYSIVQSECKTAMSECLYCGKVFLEPNSRQDHVCRPD 195
L K + KF+ ++TTY +
Sbjct: 837 TPDERRKLFKEQIVHQKFNVLLTTYEYL-------------------------------- 864
Query: 196 VRAERQPLLHAVKWQRIVLDEAHYIKDIDDSTTEAVLALESSYKWTLSGTPLQNNVGELY 255
+ +P L + W I++DE H IK+ + SS++ L+GTPLQNN+ EL+
Sbjct: 865 MNKHDRPKLSKIHWHYIIIDEGHRIKNASCKLNADLKHYVSSHRLLLTGTPLQNNLEELW 924
Query: 256 SLVRFL 261
+L+ FL
Sbjct: 925 ALLNFL 930
>AT2G28290.1 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3574
Length = 3574
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 106/246 (43%), Gaps = 67/246 (27%)
Query: 23 EPSSDLTVPLLRYQKEWLAWGLNQENSPVRGGILADEMGMGKTIQAIALV--LAKRQDLR 80
+PSS + L YQ L W ++ N+ + G ILADEMG+GKT+Q I+L+ L + ++ R
Sbjct: 745 QPSSLVGGKLREYQMNGLRWLVSLYNNHLNG-ILADEMGLGKTVQVISLICYLMETKNDR 803
Query: 81 QTGREIEHEWVPSTSSPFVTVLPAIKGTLVVCPPVAVSHWVNEIDRFTSEGSTEVLVYHG 140
PF LVV P + W +EI+ + S +VY G
Sbjct: 804 ---------------GPF----------LVVVPSSVLPGWQSEINFWAP--SIHKIVYCG 836
Query: 141 I-----DLVKPRDQFSKFDFVITTYSIVQSECKTAMSECLYCGKVFLEPNSRQDHVCRPD 195
L K + KF+ ++TTY +
Sbjct: 837 TPDERRKLFKEQIVHQKFNVLLTTYEYL-------------------------------- 864
Query: 196 VRAERQPLLHAVKWQRIVLDEAHYIKDIDDSTTEAVLALESSYKWTLSGTPLQNNVGELY 255
+ +P L + W I++DE H IK+ + SS++ L+GTPLQNN+ EL+
Sbjct: 865 MNKHDRPKLSKIHWHYIIIDEGHRIKNASCKLNADLKHYVSSHRLLLTGTPLQNNLEELW 924
Query: 256 SLVRFL 261
+L+ FL
Sbjct: 925 ALLNFL 930
>AT2G28290.3 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3543
Length = 3543
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 106/246 (43%), Gaps = 67/246 (27%)
Query: 23 EPSSDLTVPLLRYQKEWLAWGLNQENSPVRGGILADEMGMGKTIQAIALV--LAKRQDLR 80
+PSS + L YQ L W ++ N+ + G ILADEMG+GKT+Q I+L+ L + ++ R
Sbjct: 745 QPSSLVGGKLREYQMNGLRWLVSLYNNHLNG-ILADEMGLGKTVQVISLICYLMETKNDR 803
Query: 81 QTGREIEHEWVPSTSSPFVTVLPAIKGTLVVCPPVAVSHWVNEIDRFTSEGSTEVLVYHG 140
PF LVV P + W +EI+ + S +VY G
Sbjct: 804 ---------------GPF----------LVVVPSSVLPGWQSEINFWAP--SIHKIVYCG 836
Query: 141 I-----DLVKPRDQFSKFDFVITTYSIVQSECKTAMSECLYCGKVFLEPNSRQDHVCRPD 195
L K + KF+ ++TTY +
Sbjct: 837 TPDERRKLFKEQIVHQKFNVLLTTYEYL-------------------------------- 864
Query: 196 VRAERQPLLHAVKWQRIVLDEAHYIKDIDDSTTEAVLALESSYKWTLSGTPLQNNVGELY 255
+ +P L + W I++DE H IK+ + SS++ L+GTPLQNN+ EL+
Sbjct: 865 MNKHDRPKLSKIHWHYIIIDEGHRIKNASCKLNADLKHYVSSHRLLLTGTPLQNNLEELW 924
Query: 256 SLVRFL 261
+L+ FL
Sbjct: 925 ALLNFL 930
>AT2G40770.1 | Symbols: | zinc ion binding;DNA
binding;helicases;ATP binding;nucleic acid binding |
chr2:17013535-17021315 REVERSE LENGTH=1664
Length = 1664
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 83/186 (44%), Gaps = 24/186 (12%)
Query: 89 EWVPSTSSPFVTVLPAIKGTLVVCPPVAVSHWVNEIDRFTSEGSTEVLVYHGIDLVKPRD 148
E + T+SP T TL+VCP + W +EI R T GS +Y G+ +
Sbjct: 488 ELLQVTASPIST-----GATLIVCPAPILPQWHSEITRHTRLGSLITCIYEGVRNASLSE 542
Query: 149 Q-------FSKFDFVITTYSIVQSECKTAMSECLYCGKVFLEPNSRQDHVCRPDVRAERQ 201
+ D V+TTY +++ + + + H R R
Sbjct: 543 EPMIDITELLNADIVLTTYDVLKEDLTHD-----------FDRHDGDRHCLRFQKRYPVI 591
Query: 202 PL-LHAVKWQRIVLDEAHYIKDIDDSTTEAVLALESSYKWTLSGTPLQNNVGELYSLVRF 260
P L + W RI LDEA ++ + TE L L + ++W ++GTP+Q + +L+ L++F
Sbjct: 592 PTPLTRIFWWRICLDEAQMVESNAAAATEMALRLYTKHRWCITGTPIQRKLDDLFGLLKF 651
Query: 261 LQVTPY 266
L+ P+
Sbjct: 652 LKANPF 657
>AT3G57300.2 | Symbols: INO80 | INO80 ortholog |
chr3:21199612-21207635 FORWARD LENGTH=1540
Length = 1540
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 110/248 (44%), Gaps = 52/248 (20%)
Query: 32 LLRYQKEWLAWGLNQENSPVRGGILADEMGMGKTIQAIALV--LAKRQDLRQTGREIEHE 89
L YQ + L W +N + GILADEMG+GKTIQA+A + LA+ +++
Sbjct: 586 LKEYQMKGLQWLVNCYEQGL-NGILADEMGLGKTIQAMAFLAHLAEEKNI---------- 634
Query: 90 WVPSTSSPFVTVLPAIKGTLVVCPPVAVSHWVNEIDRFTSEGSTEVLVYHG--------I 141
W PF LVV P +++W +EI RF + T L Y G
Sbjct: 635 W-----GPF----------LVVAPASVLNNWADEISRFCPDLKT--LPYWGGLQERTILR 677
Query: 142 DLVKPRDQ--FSKFDFVITTYSIVQ-SECKTAMSECLYCGKVFLEPNSRQDH-----VCR 193
+ P+ FS + +++ Q CK A C V + S D +
Sbjct: 678 KNINPKRVMFFSTWIISFDPWAVRQICICKRA------CNVVRFQTLSDMDAGFHILITS 731
Query: 194 PDVRAERQPLLHAVKWQRIVLDEAHYIKDIDDSTTEAVLALESSYKWTLSGTPLQNNVGE 253
+ + VKWQ +VLDEA IK + +L+ + L+GTP+QNN+ E
Sbjct: 732 YQLLVTDEKYFRRVKWQYMVLDEAQAIKSSSSIRWKTLLSFNCRNRLLLTGTPIQNNMAE 791
Query: 254 LYSLVRFL 261
L++L+ F+
Sbjct: 792 LWALLHFI 799
>AT2G02090.1 | Symbols: CHR19, CHA19, ETL1 | SNF2 domain-containing
protein / helicase domain-containing protein |
chr2:523481-526884 FORWARD LENGTH=763
Length = 763
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 110/238 (46%), Gaps = 54/238 (22%)
Query: 31 PLLR-YQKEWLAWGLNQENSPVRGGILADEMGMGKTIQAIALVLAKRQDLRQTGREIEHE 89
P+L+ YQ + + L + G ILADEMG+GKTIQAI
Sbjct: 211 PILKPYQLVGVNFLLLLYKKGIEGAILADEMGLGKTIQAIT------------------- 251
Query: 90 WVPSTSSPFVTVLPAIKGT----LVVCPPVAVSHWVNEIDRFTSEGSTEVLVYHGIDLVK 145
++T+L + LVVCP + +W E+ ++ S VL YHG
Sbjct: 252 --------YLTLLSRLNNDPGPHLVVCPASVLENWERELRKWCP--SFTVLQYHG----A 297
Query: 146 PRDQFSKFDFVITTYSIVQSECKTAMSECLYCGKVFLEPNSRQDHVCRPDVRAERQPLLH 205
R +S+ S+ ++ + L C +F E +S Q + + + +L
Sbjct: 298 ARAAYSR-----ELNSLSKAGKPPPFNVLLVCYSLF-ERHSEQ--------QKDDRKVLK 343
Query: 206 AVKWQRIVLDEAHYIKDIDDSTTEAVL--ALESSYKWTLSGTPLQNNVGELYSLVRFL 261
+W +++DEAH +KD + + ++ A ++ + L+GTPLQN++ EL+SL+ F+
Sbjct: 344 RWRWSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFM 401
>AT2G44980.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein | chr2:18552440-18556669
REVERSE LENGTH=851
Length = 851
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 101/244 (41%), Gaps = 72/244 (29%)
Query: 28 LTVPLLRYQKEWLAWGLNQENSPVRGGILADEMGMGKTIQAIALV--LAKRQDLRQTGRE 85
+T L +Q E ++W + + V + D+MG+GKT+QAI+ + L RQ L
Sbjct: 47 VTATLKPHQVEGVSWLIQKYLLGVNVVLELDQMGLGKTLQAISFLSYLKFRQGL------ 100
Query: 86 IEHEWVPSTSSPFVTVLPAIKGTLVVCPPVAVSHWVNEIDRFTSEGSTEVLVYHG----- 140
PF LV+CP WV+EI+RFT + EVL Y G
Sbjct: 101 ---------PGPF----------LVLCPLSVTDGWVSEINRFTP--NLEVLRYVGDKYCR 139
Query: 141 IDLVKP---RDQFSKFDFVITTYSIVQSECKTAMSECLYCGKVFLEPNSRQDHVCRPDVR 197
+D+ K F FD ++TTY D+
Sbjct: 140 LDMRKSMYDHGHFLPFDVLLTTY----------------------------------DIA 165
Query: 198 AERQPLLHAVKWQRIVLDEAHYIKDIDDSTTEAVL-ALESSYKWTLSGTPLQNNVGELYS 256
Q L + WQ ++DEA +K+ + +L + ++GTP+QNN+ EL++
Sbjct: 166 LVDQDFLSQIPWQYAIIDEAQRLKNPNSVLYNVLLEQFLIPRRLLITGTPIQNNLTELWA 225
Query: 257 LVRF 260
L+ F
Sbjct: 226 LMHF 229
>AT2G44980.2 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein | chr2:18552343-18556669
REVERSE LENGTH=877
Length = 877
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 100/236 (42%), Gaps = 50/236 (21%)
Query: 28 LTVPLLRYQKEWLAWGLNQENSPVRGGILADEMGMGKTIQAIALV--LAKRQDLRQTGRE 85
+T L +Q E ++W + + V + D+MG+GKT+QAI+ + L RQ L
Sbjct: 47 VTATLKPHQVEGVSWLIQKYLLGVNVVLELDQMGLGKTLQAISFLSYLKFRQGL------ 100
Query: 86 IEHEWVPSTSSPFVTVLPAIKGTLVVCPPVAVSHWVNEIDRFTSEGSTEVLVYHGIDLVK 145
PF LV+CP WV+EI+RFT + EVL Y G
Sbjct: 101 ---------PGPF----------LVLCPLSVTDGWVSEINRFTP--NLEVLRYVG----- 134
Query: 146 PRDQFSKFDFVITTYSIVQSECKTAMSECLYCGKVFLEPNSRQDHVCRPDVRAERQPLLH 205
D++ + D + Y V+ K + D+ Q L
Sbjct: 135 --DKYCRLDMRKSMYDHVKKSSKGHFLPFDVLLTTY-------------DIALVDQDFLS 179
Query: 206 AVKWQRIVLDEAHYIKDIDDSTTEAVL-ALESSYKWTLSGTPLQNNVGELYSLVRF 260
+ WQ ++DEA +K+ + +L + ++GTP+QNN+ EL++L+ F
Sbjct: 180 QIPWQYAIIDEAQRLKNPNSVLYNVLLEQFLIPRRLLITGTPIQNNLTELWALMHF 235
>AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin
remodeling factor CHD3 (PICKLE) | chr2:10714411-10723763
FORWARD LENGTH=1384
Length = 1384
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 96/222 (43%), Gaps = 47/222 (21%)
Query: 55 ILADEMGMGKTIQAIALVLAKRQDLRQTGREIEHEWVPSTSSPFVTVLPAIKGTLVVCPP 114
ILADEMG+GKTIQ+IAL+ + E +P LV+ P
Sbjct: 295 ILADEMGLGKTIQSIALLASL----------FEENLIPH---------------LVIAPL 329
Query: 115 VAVSHWVNEIDRFTSEGSTEVLVYHGIDLVKPRDQFSKFDFVITTYSIVQSECKTAMSEC 174
+ +W E + + V++Y G + R + +F ++ + K+
Sbjct: 330 STLRNWEREFATWAPQ--MNVVMYFGT--AQARAVIREHEFYLSKDQKKIKKKKSGQ--- 382
Query: 175 LYCGKVFLEPNSRQDHVCRPDVRAER-------QPLLHAVKWQRIVLDEAHYIKDIDDST 227
+ S+Q + + DV +L +KW+ +++DE H +K+ D
Sbjct: 383 -------ISSESKQKRI-KFDVLLTSYEMINLDSAVLKPIKWECMIVDEGHRLKNKDSKL 434
Query: 228 TEAVLALESSYKWTLSGTPLQNNVGELYSLVRFLQVTPYSYL 269
++ S+++ L+GTPLQNN+ EL+ L+ FL + L
Sbjct: 435 FSSLTQYSSNHRILLTGTPLQNNLDELFMLMHFLDAGKFGSL 476
>AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containing
protein / helicase domain-containing protein |
chr3:4065636-4073992 FORWARD LENGTH=2055
Length = 2055
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 96/239 (40%), Gaps = 73/239 (30%)
Query: 32 LLRYQKEWLAWGLNQENSPVRGGILADEMGMGKTIQAIALV--LAKRQDLRQTGREIEHE 89
L YQ L W + + GILADEMG+GKTI IAL+ LA + +
Sbjct: 536 LREYQHIGLDWLVTMYEKKL-NGILADEMGLGKTIMTIALLAHLACDKGI---------- 584
Query: 90 WVPSTSSPFVTVLPAIKGTLVVCPPVAVSHWVNEIDRFTSEGSTEVLVYHGIDLVKPRD- 148
W P L+V P + +W E ++ + ++L Y G K R
Sbjct: 585 WGPH---------------LIVVPTSVMLNWETEFLKWCP--AFKILTYFGS--AKERKL 625
Query: 149 ------QFSKFDFVITTYSIVQSECKTAMSECLYCGKVFLEPNSRQDHVCRPDVRAERQP 202
+ + F ITTY +V + K
Sbjct: 626 KRQGWMKLNSFHVCITTYRLVIQDSK---------------------------------- 651
Query: 203 LLHAVKWQRIVLDEAHYIKDIDDSTTEAVLALESSYKWTLSGTPLQNNVGELYSLVRFL 261
+ KW+ ++LDEAH IK+ + +L S + L+GTPLQN++ EL+SL+ FL
Sbjct: 652 MFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFL 710
>AT4G31900.1 | Symbols: PKR2 | chromatin remodeling factor, putative
| chr4:15431528-15438443 FORWARD LENGTH=1202
Length = 1202
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 99/252 (39%), Gaps = 72/252 (28%)
Query: 28 LTVPLLRYQKEWLAWGLNQENSPVRGGILADEMGMGKTIQAIALVLAKRQDLRQTGREIE 87
LT L YQ E L + L S ILADEMG+GKTIQ+IA + +
Sbjct: 221 LTGTLHTYQLEGLNF-LRYSWSKKTNVILADEMGLGKTIQSIAFLAS------------- 266
Query: 88 HEWVPSTSSPFVTVLPAIKGTLVVCPPVAVSHWVNE---------IDRFTSEGSTEVLVY 138
SP LVV P + +W E + +T + +++
Sbjct: 267 --LFEENLSPH----------LVVAPLSTIRNWEREFATWAPHMNVVMYTGDSEARDVIW 314
Query: 139 -HGIDLVKPRDQFSKFDFVITTYSIVQSECKTAMSECLYCGKVFLEPNSRQDHVCRPDVR 197
H + R SKFD ++TTY +V + G L P
Sbjct: 315 EHEFYFSEGRK--SKFDVLLTTYEMV------------HPGISVLSP------------- 347
Query: 198 AERQPLLHAVKWQRIVLDEAHYIKDIDDSTTEAVLALESSYKWTLSGTPLQNNVGELYSL 257
+KW +++DE H +K+ ++ S + L+GTPLQNN+ EL++L
Sbjct: 348 ---------IKWTCMIIDEGHRLKNQKSKLYSSLSQFTSKHIVLLTGTPLQNNLNELFAL 398
Query: 258 VRFLQVTPYSYL 269
+ FL + L
Sbjct: 399 MHFLDADKFGSL 410
>AT2G13370.1 | Symbols: CHR5 | chromatin remodeling 5 |
chr2:5544601-5555543 REVERSE LENGTH=1724
Length = 1724
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 95/217 (43%), Gaps = 67/217 (30%)
Query: 55 ILADEMGMGKTIQAIALVLAKRQDLRQTGREIEHEWVPSTSSPFVTVLPAIKGTLVVCPP 114
ILADEMG+GKT+Q++++ L Q+ +Q +P PF LVV P
Sbjct: 647 ILADEMGLGKTVQSVSM-LGFLQNTQQ---------IPG---PF----------LVVVPL 683
Query: 115 VAVSHWVNEIDRF----------TSEGSTEVLVYHGIDLVKPRDQFSKFDFVITTYSIVQ 164
+++W E ++ + S EV + K + KF+ ++TTY +V
Sbjct: 684 STLANWAKEFRKWLPGMNIIVYVGTRASREVCQQYEFYNEKKVGRPIKFNALLTTYEVVL 743
Query: 165 SECKTAMSECLYCGKVFLEPNSRQDHVCRPDVRAERQPLLHAVKWQRIVLDEAHYIKDID 224
+ + +L +KW +++DEAH +K+ +
Sbjct: 744 KD----------------------------------KAVLSKIKWIYLMVDEAHRLKNSE 769
Query: 225 DSTTEAVLALESSYKWTLSGTPLQNNVGELYSLVRFL 261
A+L + K ++GTPLQN+V EL++L+ FL
Sbjct: 770 AQLYTALLEFSTKNKLLITGTPLQNSVEELWALLHFL 806
>AT4G31900.2 | Symbols: PKR2 | chromatin remodeling factor, putative
| chr4:15431528-15438443 FORWARD LENGTH=1161
Length = 1161
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 99/252 (39%), Gaps = 72/252 (28%)
Query: 28 LTVPLLRYQKEWLAWGLNQENSPVRGGILADEMGMGKTIQAIALVLAKRQDLRQTGREIE 87
LT L YQ E L + L S ILADEMG+GKTIQ+IA + +
Sbjct: 180 LTGTLHTYQLEGLNF-LRYSWSKKTNVILADEMGLGKTIQSIAFLAS------------- 225
Query: 88 HEWVPSTSSPFVTVLPAIKGTLVVCPPVAVSHWVNE---------IDRFTSEGSTEVLVY 138
SP LVV P + +W E + +T + +++
Sbjct: 226 --LFEENLSPH----------LVVAPLSTIRNWEREFATWAPHMNVVMYTGDSEARDVIW 273
Query: 139 -HGIDLVKPRDQFSKFDFVITTYSIVQSECKTAMSECLYCGKVFLEPNSRQDHVCRPDVR 197
H + R SKFD ++TTY +V + G L P
Sbjct: 274 EHEFYFSEGRK--SKFDVLLTTYEMV------------HPGISVLSP------------- 306
Query: 198 AERQPLLHAVKWQRIVLDEAHYIKDIDDSTTEAVLALESSYKWTLSGTPLQNNVGELYSL 257
+KW +++DE H +K+ ++ S + L+GTPLQNN+ EL++L
Sbjct: 307 ---------IKWTCMIIDEGHRLKNQKSKLYSSLSQFTSKHIVLLTGTPLQNNLNELFAL 357
Query: 258 VRFLQVTPYSYL 269
+ FL + L
Sbjct: 358 MHFLDADKFGSL 369
>AT5G44800.1 | Symbols: CHR4, PKR1 | chromatin remodeling 4 |
chr5:18083659-18092162 REVERSE LENGTH=2223
Length = 2223
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 102/261 (39%), Gaps = 45/261 (17%)
Query: 3 EEDASAGAGNGKEELTVETAEPSSDLTVPLLRYQKEWLAWGLNQENSPVRGGILADEMGM 62
E ++ + E+ T +P L +Q E L W L + + ILADEMG+
Sbjct: 660 ERNSKGNPTRERGEVVTLTEQPQELRGGALFAHQLEALNW-LRRCWHKSKNVILADEMGL 718
Query: 63 GKTIQAIALVLAKRQDLRQTGREIEHEWVPSTSSPFVTVLPAIKGTLVVCPPVAVSHWVN 122
GKT+ A A + S + LV+ P + +W++
Sbjct: 719 GKTVSASAFL-----------------------SSLYFEFGVARPCLVLVPLSTMPNWLS 755
Query: 123 EIDRFTSEGSTEVLVYHGIDLVKPRDQFSKFDFVITTYS-IVQSECKTAMSECLYCGKVF 181
E + V+ YHG +K +I Y ++ T Y V
Sbjct: 756 EFSLWAP--LLNVVEYHG---------SAKGRAIIRDYEWHAKNSTGTTKKPTSYKFNVL 804
Query: 182 LEPNSRQDHVCRPDVRAERQPLLHAVKWQRIVLDEAHYIKDIDDSTTEAVLALESSYKWT 241
L V A+ L V W+ +V+DE H +K+ + + ++
Sbjct: 805 L--------TTYEMVLADSS-HLRGVPWEVLVVDEGHRLKNSESKLFSLLNTFSFQHRVL 855
Query: 242 LSGTPLQNNVGELYSLVRFLQ 262
L+GTPLQNN+GE+Y+L+ FLQ
Sbjct: 856 LTGTPLQNNIGEMYNLLNFLQ 876