Miyakogusa Predicted Gene

Lj3g3v2908510.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2908510.1 tr|C1MPK3|C1MPK3_MICPC Predicted protein
OS=Micromonas pusilla (strain CCMP1545)
GN=MICPUCDRAFT_5693,31.14,0.0000000003,coiled-coil,NULL; L9
N-domain-like,Ribosomal protein L9/RNase H1, N-terminal; 50S RIBOSOMAL
PROTEIN ,CUFF.45075.1
         (222 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G53070.1 | Symbols:  | Ribosomal protein L9/RNase H1 | chr5:2...   237   6e-63

>AT5G53070.1 | Symbols:  | Ribosomal protein L9/RNase H1 |
           chr5:21518837-21520167 FORWARD LENGTH=221
          Length = 221

 Score =  237 bits (604), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 130/224 (58%), Positives = 171/224 (76%), Gaps = 7/224 (3%)

Query: 1   MGYLQYGRLGVRQIIRFRDSSSN---SAVVNPLLYASQGLRYNRKLQVILTTDIDKLGKA 57
           M Y+   R  +R ++  R ++ +   +A+ +PLL+A QG+RY RKL+VILTT I+KLGKA
Sbjct: 1   MAYVGQSRNVIRHVVS-RGTAYHKYENAIHHPLLFACQGVRY-RKLEVILTTGIEKLGKA 58

Query: 58  GDTVKVAPGYFRNHLMPKLLAVPNIDKFAYLLTEQRKIYQPTEEEKQEDVTVVKESKEDL 117
           G+TVKVAPGYFRNHLMPKLLAVPNIDK+AYL+ EQRK+Y    EE +E+V VV ++ E  
Sbjct: 59  GETVKVAPGYFRNHLMPKLLAVPNIDKYAYLIREQRKMY--NHEEVKEEVKVVHKTSEVQ 116

Query: 118 MKEYEAAALRLDKAKLVLRRLIDVKKAKARASKDEPLEIRLPVTKEVLVAEVARQLCVNI 177
            KEYE AA RL  A LVLR+L+D +K K R+SKD+  +++ P+TKE +V+EVARQLCV I
Sbjct: 117 TKEYEKAAKRLANANLVLRKLVDKEKFKNRSSKDDKPDVQTPITKEEIVSEVARQLCVKI 176

Query: 178 APENLHLPSPLSTVGEYEVPLRLPRSIPLPEGKVNWSLQVKVRS 221
            P+N+ L +PL T GEYEVPL+ P++IPLP+G V W L+VKVR 
Sbjct: 177 DPDNVVLAAPLETFGEYEVPLKFPKTIPLPQGTVQWILKVKVRG 220