Miyakogusa Predicted Gene
- Lj3g3v2908390.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v2908390.1 Non Chatacterized Hit- tr|I1KFD3|I1KFD3_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,74.07,0,DNA_pol_A_exo1,3'-5' exonuclease domain;
HRDC,Helicase/RNase D C-terminal, HRDC domain; seg,NULL;
no,CUFF.45036.1
(911 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G32415.1 | Symbols: | Polynucleotidyl transferase, ribonucle... 1050 0.0
AT2G32415.2 | Symbols: | Polynucleotidyl transferase, ribonucle... 1023 0.0
AT5G35910.1 | Symbols: | Polynucleotidyl transferase, ribonucle... 210 4e-54
AT1G54440.2 | Symbols: | Polynucleotidyl transferase, ribonucle... 202 9e-52
AT1G54440.1 | Symbols: | Polynucleotidyl transferase, ribonucle... 202 9e-52
>AT2G32415.1 | Symbols: | Polynucleotidyl transferase, ribonuclease
H fold protein with HRDC domain | chr2:13761307-13765421
REVERSE LENGTH=891
Length = 891
Score = 1050 bits (2715), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 529/893 (59%), Positives = 648/893 (72%), Gaps = 61/893 (6%)
Query: 36 RHESPPSSCYSHSERKPKCAFKRVLADNSYAPFKHLSLNDENGSDL------HPFEAEIT 89
+ S SSCY HSE KP+ FKRVLADNSY+ FKHL L D + S L HP+E EIT
Sbjct: 35 KQTSSLSSCYLHSELKPQFGFKRVLADNSYSEFKHLKLVDASSSSLEKPSNGHPYETEIT 94
Query: 90 ALVRSPQPEIELSDDFEVVDLETNDSYVWVDTEVLLKELVNELSKEKFFAVDTEQHSLHS 149
L+ +PQ IE LE +DSYVWV+TE LKEL L+KE+ FAVDTEQHSL S
Sbjct: 95 VLLENPQ--IEFGFLRGECSLEMSDSYVWVETESQLKELAEILAKEQVFAVDTEQHSLRS 152
Query: 150 FLGFTALVQISTQKKDYLVDTIALHDSMGILRPVFANPSICKVFHGADNDILWLQRDFHI 209
FLGFTAL+QIST ++D+LVDTIALHD M ILRPVF++P+ICKVFHGADND++WLQRDFHI
Sbjct: 153 FLGFTALIQISTHEEDFLVDTIALHDVMSILRPVFSDPNICKVFHGADNDVIWLQRDFHI 212
Query: 210 YVVNLFDTSKACEVLSKPQKSLAYLLETYCGVVTNKLLQREDWRQRPLSAEMLHYALTDA 269
YVVN+FDT+KACEVLSKPQ+SLAYLLET CGV TNKLLQREDWRQRPLS EM+ YA TDA
Sbjct: 213 YVVNMFDTAKACEVLSKPQRSLAYLLETVCGVATNKLLQREDWRQRPLSEEMVRYARTDA 272
Query: 270 HYLLYIANCMINELRQLDNENSGSDDKIQFVLEACRRSNMICLQLFTKDIEASPGESSVL 329
HYLLYIA+ + EL+QL ++S DD+ F+LEA RRSNM CLQL+TK+ E PG ++
Sbjct: 273 HYLLYIADSLTTELKQLATDSSSPDDRFHFLLEASRRSNMTCLQLYTKETEDFPGSAASS 332
Query: 330 SLFSRHVSSQ-DVPSISNETQFQHTVRQLCTWRDLMARIHDESLKYVLSDQAIGALASQP 388
S+ RH++ D +IS + VR+LC WRDLM RIHDES +YVLSDQAI L+ +
Sbjct: 333 SIIYRHLNGHGDKSNIS--LNAEELVRKLCAWRDLMGRIHDESTRYVLSDQAIVGLSCKQ 390
Query: 389 PATHTEIYKTIARTDINFEMGLNXXXXXXX--XXXCSHLNDIYDLLANKLVNRGDIYSVI 446
P T EIY TIA D+ E + CSHL+DIY ++ +KL D+ V+
Sbjct: 391 PTTTEEIYDTIAHIDLATESSPSLSSSVQSPYPVICSHLDDIYKMILDKLAKLDDLLPVV 450
Query: 447 IQKCLGQNGICQLSIFNYALLVNGSPRPT--SVHKHSRLKNLK-QFSRKASRDLFVQKFS 503
++KCLG NG C +S+FNY+LLVN + + S K + KN K QF+RKASR+LFV+KFS
Sbjct: 451 LKKCLGTNGTCPISVFNYSLLVNFKTKLSSHSAPKQNGHKNFKQQFTRKASRELFVKKFS 510
Query: 504 CKAPVYHNCRIYANDGRLLCYCDRKKLEWYLSRDLAKLVDDDPPGIMLLFEPKGRPEDED 563
CKAPVYHNCRIYANDGRLLCYCD++KLEWYL+R LAKLV+++PP IMLLFEPKGRPEDE
Sbjct: 511 CKAPVYHNCRIYANDGRLLCYCDKRKLEWYLNRGLAKLVEENPPAIMLLFEPKGRPEDEG 570
Query: 564 NDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSHDIVLLCVDCHEIAHA 623
NDFYIQ+K+NICVGCGEG HYLRYRIIPSCYR+HFPEHLKSHRSHDIVLLCVDCHE+AHA
Sbjct: 571 NDFYIQTKRNICVGCGEGKHYLRYRIIPSCYRVHFPEHLKSHRSHDIVLLCVDCHEVAHA 630
Query: 624 AAEKYKRKIAAEYGIPLYVRSVIHPREKN-------EEQT---EEGGVSPLQLRTAAMAL 673
AAE+YK++IA E+GIPL+VR V+ +E +E T E+ GVSPL LR+AAMAL
Sbjct: 631 AAERYKKQIATEFGIPLFVRRVLDSKEAQGTSSLVEDESTGDSEDAGVSPLHLRSAAMAL 690
Query: 674 LRHGPRMPLDRREELTEIVKRYYGGREITEEDLEGALQVGMTPQERRRFEKKRGFSFKHS 733
LRHG RMP RREEL + VK YYGGR+++EEDLE AL +G++P ERR+ E+K+G SFKHS
Sbjct: 691 LRHGNRMPSSRREELLQTVKMYYGGRDLSEEDLEKALLIGLSPHERRKLERKKGVSFKHS 750
Query: 734 TESTAAVPQLENHVGCAPGDEDALNDDAHDGELLMEKDDLGNPLLASDLAVDAAISNGDY 793
E D D+ +DGE L + + + + V+ + D
Sbjct: 751 AEVAGM---------------DKQEDENNDGEALADFEKI--------MTVERSTVVDDS 787
Query: 794 NEGGNSLNVDNSLSRTLPNGVSDLFDPSKYEESTLAKHNSKLSLLGHGPHGNLVVEHLLK 853
+G + + L+ T NG +TL + NSKLSLLGHGPHG +VE+LL+
Sbjct: 788 GDGTSEGDGAKELNDTQCNG------------NTLHQQNSKLSLLGHGPHGKQIVEYLLR 835
Query: 854 EFGEEGIGEFCQRWRQVFVDAVNPRFLPGGWDVKHSGRREFGKFSVYNTDKRV 906
E GE+G+ +FCQRWR+VFVDAV+PR LPGGW+V HSGRR+FG+FSVYN KR+
Sbjct: 836 EHGEDGVRDFCQRWRKVFVDAVHPRHLPGGWNVSHSGRRDFGEFSVYNPTKRL 888
>AT2G32415.2 | Symbols: | Polynucleotidyl transferase, ribonuclease
H fold protein with HRDC domain | chr2:13761386-13765421
REVERSE LENGTH=872
Length = 872
Score = 1023 bits (2645), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 516/875 (58%), Positives = 632/875 (72%), Gaps = 61/875 (6%)
Query: 36 RHESPPSSCYSHSERKPKCAFKRVLADNSYAPFKHLSLNDENGSDL------HPFEAEIT 89
+ S SSCY HSE KP+ FKRVLADNSY+ FKHL L D + S L HP+E EIT
Sbjct: 35 KQTSSLSSCYLHSELKPQFGFKRVLADNSYSEFKHLKLVDASSSSLEKPSNGHPYETEIT 94
Query: 90 ALVRSPQPEIELSDDFEVVDLETNDSYVWVDTEVLLKELVNELSKEKFFAVDTEQHSLHS 149
L+ +PQ IE LE +DSYVWV+TE LKEL L+KE+ FAVDTEQHSL S
Sbjct: 95 VLLENPQ--IEFGFLRGECSLEMSDSYVWVETESQLKELAEILAKEQVFAVDTEQHSLRS 152
Query: 150 FLGFTALVQISTQKKDYLVDTIALHDSMGILRPVFANPSICKVFHGADNDILWLQRDFHI 209
FLGFTAL+QIST ++D+LVDTIALHD M ILRPVF++P+ICKVFHGADND++WLQRDFHI
Sbjct: 153 FLGFTALIQISTHEEDFLVDTIALHDVMSILRPVFSDPNICKVFHGADNDVIWLQRDFHI 212
Query: 210 YVVNLFDTSKACEVLSKPQKSLAYLLETYCGVVTNKLLQREDWRQRPLSAEMLHYALTDA 269
YVVN+FDT+KACEVLSKPQ+SLAYLLET CGV TNKLLQREDWRQRPLS EM+ YA TDA
Sbjct: 213 YVVNMFDTAKACEVLSKPQRSLAYLLETVCGVATNKLLQREDWRQRPLSEEMVRYARTDA 272
Query: 270 HYLLYIANCMINELRQLDNENSGSDDKIQFVLEACRRSNMICLQLFTKDIEASPGESSVL 329
HYLLYIA+ + EL+QL ++S DD+ F+LEA RRSNM CLQL+TK+ E PG ++
Sbjct: 273 HYLLYIADSLTTELKQLATDSSSPDDRFHFLLEASRRSNMTCLQLYTKETEDFPGSAASS 332
Query: 330 SLFSRHVSSQ-DVPSISNETQFQHTVRQLCTWRDLMARIHDESLKYVLSDQAIGALASQP 388
S+ RH++ D +IS + VR+LC WRDLM RIHDES +YVLSDQAI L+ +
Sbjct: 333 SIIYRHLNGHGDKSNIS--LNAEELVRKLCAWRDLMGRIHDESTRYVLSDQAIVGLSCKQ 390
Query: 389 PATHTEIYKTIARTDINFEMGLNXXXXXXX--XXXCSHLNDIYDLLANKLVNRGDIYSVI 446
P T EIY TIA D+ E + CSHL+DIY ++ +KL D+ V+
Sbjct: 391 PTTTEEIYDTIAHIDLATESSPSLSSSVQSPYPVICSHLDDIYKMILDKLAKLDDLLPVV 450
Query: 447 IQKCLGQNGICQLSIFNYALLVNGSPRPT--SVHKHSRLKNLK-QFSRKASRDLFVQKFS 503
++KCLG NG C +S+FNY+LLVN + + S K + KN K QF+RKASR+LFV+KFS
Sbjct: 451 LKKCLGTNGTCPISVFNYSLLVNFKTKLSSHSAPKQNGHKNFKQQFTRKASRELFVKKFS 510
Query: 504 CKAPVYHNCRIYANDGRLLCYCDRKKLEWYLSRDLAKLVDDDPPGIMLLFEPKGRPEDED 563
CKAPVYHNCRIYANDGRLLCYCD++KLEWYL+R LAKLV+++PP IMLLFEPKGRPEDE
Sbjct: 511 CKAPVYHNCRIYANDGRLLCYCDKRKLEWYLNRGLAKLVEENPPAIMLLFEPKGRPEDEG 570
Query: 564 NDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSHDIVLLCVDCHEIAHA 623
NDFYIQ+K+NICVGCGEG HYLRYRIIPSCYR+HFPEHLKSHRSHDIVLLCVDCHE+AHA
Sbjct: 571 NDFYIQTKRNICVGCGEGKHYLRYRIIPSCYRVHFPEHLKSHRSHDIVLLCVDCHEVAHA 630
Query: 624 AAEKYKRKIAAEYGIPLYVRSVIHPREKN-------EEQT---EEGGVSPLQLRTAAMAL 673
AAE+YK++IA E+GIPL+VR V+ +E +E T E+ GVSPL LR+AAMAL
Sbjct: 631 AAERYKKQIATEFGIPLFVRRVLDSKEAQGTSSLVEDESTGDSEDAGVSPLHLRSAAMAL 690
Query: 674 LRHGPRMPLDRREELTEIVKRYYGGREITEEDLEGALQVGMTPQERRRFEKKRGFSFKHS 733
LRHG RMP RREEL + VK YYGGR+++EEDLE AL +G++P ERR+ E+K+G SFKHS
Sbjct: 691 LRHGNRMPSSRREELLQTVKMYYGGRDLSEEDLEKALLIGLSPHERRKLERKKGVSFKHS 750
Query: 734 TESTAAVPQLENHVGCAPGDEDALNDDAHDGELLMEKDDLGNPLLASDLAVDAAISNGDY 793
E D D+ +DGE L + + + + V+ + D
Sbjct: 751 AEVAGM---------------DKQEDENNDGEALADFEKI--------MTVERSTVVDDS 787
Query: 794 NEGGNSLNVDNSLSRTLPNGVSDLFDPSKYEESTLAKHNSKLSLLGHGPHGNLVVEHLLK 853
+G + + L+ T NG +TL + NSKLSLLGHGPHG +VE+LL+
Sbjct: 788 GDGTSEGDGAKELNDTQCNG------------NTLHQQNSKLSLLGHGPHGKQIVEYLLR 835
Query: 854 EFGEEGIGEFCQRWRQVFVDAVNPRFLPGGWDVKH 888
E GE+G+ +FCQRWR+VFVDAV+PR LPGGW+V H
Sbjct: 836 EHGEDGVRDFCQRWRKVFVDAVHPRHLPGGWNVSH 870
>AT5G35910.1 | Symbols: | Polynucleotidyl transferase, ribonuclease
H fold protein with HRDC domain | chr5:14029871-14035405
REVERSE LENGTH=870
Length = 870
Score = 210 bits (534), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 130/344 (37%), Positives = 194/344 (56%), Gaps = 22/344 (6%)
Query: 50 RKPKCAFKRVLADNSYAPFKHLSL--NDENGSDLHPFEA-EITALVRSPQPEIELSDDFE 106
+KP+ + +L +N+ PF+H+ L ++++ +HP E + V E+E +
Sbjct: 196 KKPQEEY-NILVNNANLPFEHVWLERSEDDLRAMHPLEKFSVLDFVDKDVNEME---PVK 251
Query: 107 VVDLETNDSYVWVDTEVLLKELVNELSKEKFFAVDTEQHSLHSFLGFTALVQISTQKKDY 166
+ LE + +V LKELV +L + FAVD E + SF G T L+QIST+ +DY
Sbjct: 252 PLPLEQT-PFKFVQEVKDLKELVAKLRSVEEFAVDLEHNQYRSFQGLTCLMQISTRTEDY 310
Query: 167 LVDTIALHDSMG-ILRPVFANPSICKVFHGADNDILWLQRDFHIYVVNLFDTSKACEVLS 225
+VDT L +G LR +F +P KV HGAD DI+WLQRDF IYV NLFDT +A VL+
Sbjct: 311 IVDTFKLRIHIGPYLREIFKDPKKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRVLN 370
Query: 226 KPQKSLAYLLETYCGVVTNKLLQREDWRQRPLSAEMLHYALTDAHYLLYIANCMINELRQ 285
+ SL +LL+ +CGV NK Q DWR RPL EM YA D HYLLYI + + EL++
Sbjct: 371 LERNSLEFLLQHFCGVTANKEYQNADWRIRPLPEEMTRYAREDTHYLLYIYDLIKLELQR 430
Query: 286 LDNENSGSDDKIQFVLEACRRSNMICLQLFTKDIEASPGESSVLSLFSRHVSSQDVPSIS 345
+ +++ +D + LE +RS +C QL+ K++ E+S L ++ + + ++
Sbjct: 431 MAKDDAHTDSPL---LEVYKRSYDVCTQLYEKELLT---ENSYLHVYGLQAAGFNAAQLA 484
Query: 346 NETQFQHTVRQLCTWRDLMARIHDESLKYVLSDQAIGALASQPP 389
V LC WRD +AR DES YVL ++ + +A + P
Sbjct: 485 -------IVAGLCEWRDFIARAEDESTGYVLPNKVLLEIAKEMP 521
>AT1G54440.2 | Symbols: | Polynucleotidyl transferase, ribonuclease
H fold protein with HRDC domain | chr1:20323284-20327931
FORWARD LENGTH=639
Length = 639
Score = 202 bits (514), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 133/361 (36%), Positives = 193/361 (53%), Gaps = 38/361 (10%)
Query: 51 KPKCAFKRVLADNSYAPFKHLSL-NDENGSD-LHPFEAEITAL---------VRSPQPEI 99
KP+ +K +L DN+ PF+H+ L E+G +HP E E++ + +R +P
Sbjct: 52 KPQEEYK-ILVDNANNPFEHVLLEKSEDGLRFIHPLE-ELSVMDFVDRNLSEMRPVKPLP 109
Query: 100 ELSDDFEVVDLETNDSYVWVDTEVLLKELVNELSKEKFFAVDTEQHSLHSFLGFTALVQI 159
F++V+ E D L++L L + FAVD E + +F G T L+QI
Sbjct: 110 LEETPFKLVE-EVKD----------LEDLAAALQSVEEFAVDLEHNQYRTFQGLTCLMQI 158
Query: 160 STQKKDYLVDTIALHDSMG-ILRPVFANPSICKVFHGADNDILWLQRDFHIYVVNLFDTS 218
ST+ +DY+VD L D +G LR +F +P KV HGAD DI+WLQRDF IYV NLFDT
Sbjct: 159 STRTEDYIVDIFKLWDHIGPYLRELFKDPKKKKVIHGADRDIIWLQRDFGIYVCNLFDTG 218
Query: 219 KACEVLSKPQKSLAYLLETYCGVVTNKLLQREDWRQRPLSAEMLHYALTDAHYLLYIANC 278
+A VL + SL +LL+ YCGV NK Q+ DWR RPL M YA D HYLLYI +
Sbjct: 219 QASRVLKLERNSLEFLLKHYCGVAANKEYQKADWRIRPLPDVMKRYAREDTHYLLYIYDV 278
Query: 279 MINELRQLDNENSGSDDKIQFVLEACRRSNMICLQLFTKDIEASPGESSVLSLFSRHVSS 338
M EL + E+ SD + +E +RS +C+QL+ K++ S L ++ +
Sbjct: 279 MRMELHTMAKEDEQSDSPL---VEVYKRSYDVCMQLYEKELWT---RDSYLHVYGVQTGN 332
Query: 339 QDVPSISNETQFQHTVRQLCTWRDLMARIHDESLKYVLSDQAIGALASQPPATHTEIYKT 398
+ +S V LC WRD +AR DES YVL ++ + +A + P ++ +
Sbjct: 333 LNAVQLS-------IVAGLCEWRDRIARADDESTGYVLPNKTLFDIAKEMPIVVAQLRRL 385
Query: 399 I 399
+
Sbjct: 386 L 386
>AT1G54440.1 | Symbols: | Polynucleotidyl transferase, ribonuclease
H fold protein with HRDC domain | chr1:20323284-20327931
FORWARD LENGTH=637
Length = 637
Score = 202 bits (514), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 133/361 (36%), Positives = 193/361 (53%), Gaps = 38/361 (10%)
Query: 51 KPKCAFKRVLADNSYAPFKHLSL-NDENGSD-LHPFEAEITAL---------VRSPQPEI 99
KP+ +K +L DN+ PF+H+ L E+G +HP E E++ + +R +P
Sbjct: 52 KPQEEYK-ILVDNANNPFEHVLLEKSEDGLRFIHPLE-ELSVMDFVDRNLSEMRPVKPLP 109
Query: 100 ELSDDFEVVDLETNDSYVWVDTEVLLKELVNELSKEKFFAVDTEQHSLHSFLGFTALVQI 159
F++V+ E D L++L L + FAVD E + +F G T L+QI
Sbjct: 110 LEETPFKLVE-EVKD----------LEDLAAALQSVEEFAVDLEHNQYRTFQGLTCLMQI 158
Query: 160 STQKKDYLVDTIALHDSMG-ILRPVFANPSICKVFHGADNDILWLQRDFHIYVVNLFDTS 218
ST+ +DY+VD L D +G LR +F +P KV HGAD DI+WLQRDF IYV NLFDT
Sbjct: 159 STRTEDYIVDIFKLWDHIGPYLRELFKDPKKKKVIHGADRDIIWLQRDFGIYVCNLFDTG 218
Query: 219 KACEVLSKPQKSLAYLLETYCGVVTNKLLQREDWRQRPLSAEMLHYALTDAHYLLYIANC 278
+A VL + SL +LL+ YCGV NK Q+ DWR RPL M YA D HYLLYI +
Sbjct: 219 QASRVLKLERNSLEFLLKHYCGVAANKEYQKADWRIRPLPDVMKRYAREDTHYLLYIYDV 278
Query: 279 MINELRQLDNENSGSDDKIQFVLEACRRSNMICLQLFTKDIEASPGESSVLSLFSRHVSS 338
M EL + E+ SD + +E +RS +C+QL+ K++ S L ++ +
Sbjct: 279 MRMELHTMAKEDEQSDSPL---VEVYKRSYDVCMQLYEKELWT---RDSYLHVYGVQTGN 332
Query: 339 QDVPSISNETQFQHTVRQLCTWRDLMARIHDESLKYVLSDQAIGALASQPPATHTEIYKT 398
+ +S V LC WRD +AR DES YVL ++ + +A + P ++ +
Sbjct: 333 LNAVQLS-------IVAGLCEWRDRIARADDESTGYVLPNKTLFDIAKEMPIVVAQLRRL 385
Query: 399 I 399
+
Sbjct: 386 L 386