Miyakogusa Predicted Gene

Lj3g3v2907330.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2907330.1 Non Chatacterized Hit- tr|I1KAP9|I1KAP9_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,37.63,2e-19,F_box_assoc_1: F-box protein interaction domain,F-box
associated interaction domain,CUFF.44944.1
         (185 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G06240.1 | Symbols:  | F-box family protein | chr3:1887336-18...    60   9e-10
AT4G12560.2 | Symbols: CPR30 | F-box and associated interaction ...    51   3e-07
AT4G12560.1 | Symbols: CPR30 | F-box and associated interaction ...    51   3e-07
AT1G32600.1 | Symbols:  | F-box associated ubiquitination effect...    51   4e-07
AT3G23880.1 | Symbols:  | F-box and associated interaction domai...    51   5e-07

>AT3G06240.1 | Symbols:  | F-box family protein |
           chr3:1887336-1888619 FORWARD LENGTH=427
          Length = 427

 Score = 60.1 bits (144), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 25/161 (15%)

Query: 27  IVGSCRGFLLIGYDRGRSLSIWNPSTHVHKPLPVD--ANAYEYDHMYPYEYGFGYDSSKD 84
           IVGS  G + I    G ++ ++NP+T   K LP +    + EY+      YGFG+D   D
Sbjct: 165 IVGSSNGLVCISPGEG-AVFLYNPTTGDSKRLPENFRPKSVEYERDNFQTYGFGFDGLTD 223

Query: 85  DYLVVRVPGVKPGSSTNFADVQFFSLRANIWKYTESVDLPSSLASTKGADLPTFTTVPDH 144
           DY +V++      +S +  D   +SL+A+ W+   +++   +  S              +
Sbjct: 224 DYKLVKL----VATSEDILDASVYSLKADSWRRICNLNYEHNDGS--------------Y 265

Query: 145 SVGLLFNEAIHWVAQNFVAGRVTH-FIIAFDLMEKRLLEIP 184
           + G+ FN AIHWV   F   R     ++AFD+  +   E+P
Sbjct: 266 TSGVHFNGAIHWV---FTESRHNQRVVVAFDIQTEEFREMP 303


>AT4G12560.2 | Symbols: CPR30 | F-box and associated interaction
           domains-containing protein | chr4:7441815-7443157
           FORWARD LENGTH=413
          Length = 413

 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 71/158 (44%), Gaps = 17/158 (10%)

Query: 27  IVGSCRGFLLIGYDRGRS-LSIWNPST-HVHK--PLPVDANAYEYDHMYPYEYGFGYDSS 82
           + GS  G  LIG     + L+++NPST  +H+  P  +D         Y + YG GYDS 
Sbjct: 91  VFGSSNG--LIGLSNSPTDLAVFNPSTRQIHRLPPSSIDLPDGSSTRGYVF-YGLGYDSV 147

Query: 83  KDDYLVVRVPGVKPGSSTNFA-----DVQFFSLRANIWKYTESVDLPSSLASTKGADLPT 137
            DDY VVR+   K  S          +V+ FSL+ N WK  ESV      +S +      
Sbjct: 148 SDDYKVVRMVQFKIDSEDELGCSFPYEVKVFSLKKNSWKRIESV-----ASSIQLLFYFY 202

Query: 138 FTTVPDHSVGLLFNEAIHWVAQNFVAGRVTHFIIAFDL 175
           +  +     G+L   ++HWV          + I+ FDL
Sbjct: 203 YHLLYRRGYGVLAGNSLHWVLPRRPGLIAFNLIVRFDL 240


>AT4G12560.1 | Symbols: CPR30 | F-box and associated interaction
           domains-containing protein | chr4:7441815-7443157
           FORWARD LENGTH=413
          Length = 413

 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 71/158 (44%), Gaps = 17/158 (10%)

Query: 27  IVGSCRGFLLIGYDRGRS-LSIWNPST-HVHK--PLPVDANAYEYDHMYPYEYGFGYDSS 82
           + GS  G  LIG     + L+++NPST  +H+  P  +D         Y + YG GYDS 
Sbjct: 91  VFGSSNG--LIGLSNSPTDLAVFNPSTRQIHRLPPSSIDLPDGSSTRGYVF-YGLGYDSV 147

Query: 83  KDDYLVVRVPGVKPGSSTNFA-----DVQFFSLRANIWKYTESVDLPSSLASTKGADLPT 137
            DDY VVR+   K  S          +V+ FSL+ N WK  ESV      +S +      
Sbjct: 148 SDDYKVVRMVQFKIDSEDELGCSFPYEVKVFSLKKNSWKRIESV-----ASSIQLLFYFY 202

Query: 138 FTTVPDHSVGLLFNEAIHWVAQNFVAGRVTHFIIAFDL 175
           +  +     G+L   ++HWV          + I+ FDL
Sbjct: 203 YHLLYRRGYGVLAGNSLHWVLPRRPGLIAFNLIVRFDL 240


>AT1G32600.1 | Symbols:  | F-box associated ubiquitination effector
           family protein | chr1:11794802-11795683 FORWARD
           LENGTH=293
          Length = 293

 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 64/156 (41%), Gaps = 31/156 (19%)

Query: 23  TVPYIVGSCRGFLLIGYDRGRSLSIWNPSTHVHKPLPVDANAYEYDHMYPYEYGFGYDSS 82
           T P  + SCRG + +       L+IW P++   K +P+       + +     GFGYD  
Sbjct: 40  TEPVCILSCRGVICLTRKDNNELAIWKPTSTKFKRVPMIKRGQTQNLL-----GFGYDRV 94

Query: 83  KDDYLVVRVPGVKPGSSTNFADVQFFSLRANIWKYTESVDLPSSLASTKGADLPTFTTVP 142
            DDY +V +   K            F+ + + W+  ES  +PSS    K           
Sbjct: 95  LDDYKIVTIIDKK---------TYIFTFKESSWR--ESKLIPSSDCFFK----------- 132

Query: 143 DHSVGLLFNEAIHWVAQNFVAGRVTHFIIAFDLMEK 178
               G + +  ++W+A  F   +   FI+ FD + +
Sbjct: 133 -ERTGTVVDNCMYWIANRFNKEK---FILCFDFVNE 164


>AT3G23880.1 | Symbols:  | F-box and associated interaction
           domains-containing protein | chr3:8622061-8623155
           REVERSE LENGTH=364
          Length = 364

 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 4/94 (4%)

Query: 27  IVGSCRGFLLIGYDRGRSLSIWNPSTHVHKPLPVDANAYEYDHMYPYEYGFGYDSSKDDY 86
           +VG+C G +    D  +SL +WNP+  + + L   ++    D      YGFGYD S+DDY
Sbjct: 112 VVGTCHGLVCFHVDYDKSLYLWNPTIKLQQRLS-SSDLETSDDECVVTYGFGYDESEDDY 170

Query: 87  LVVRVPGVKPGSSTNFADVQFFSLRANIWKYTES 120
            VV +   +        + + +S R  +W+   S
Sbjct: 171 KVVALLQQRHQVKI---ETKIYSTRQKLWRSNTS 201