Miyakogusa Predicted Gene

Lj3g3v2906190.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2906190.1 Non Chatacterized Hit- tr|J9F006|J9F006_9SPIT
Uncharacterized protein OS=Oxytricha trifallax PE=4
SV,48.98,3e-18,POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED,NULL;
DNA_pol_A_exo1,3'-5' exonuclease domain; HRDC,Hel,gene.g49922.t1.1
         (511 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G32415.2 | Symbols:  | Polynucleotidyl transferase, ribonucle...   236   3e-62
AT2G32415.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...   236   3e-62
AT1G54440.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...    89   6e-18
AT1G54440.2 | Symbols:  | Polynucleotidyl transferase, ribonucle...    89   6e-18
AT5G35910.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...    89   8e-18

>AT2G32415.2 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H fold protein with HRDC domain | chr2:13761386-13765421
           REVERSE LENGTH=872
          Length = 872

 Score =  236 bits (602), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 118/212 (55%), Positives = 149/212 (70%), Gaps = 5/212 (2%)

Query: 64  GVVTNKLLQFQHTVRQLCTWRDLMARIHDESLKYVLSDQAIGALASQPPATHTEIYKTIA 123
           G  +N  L  +  VR+LC WRDLM RIHDES +YVLSDQAI  L+ + P T  EIY TIA
Sbjct: 343 GDKSNISLNAEELVRKLCAWRDLMGRIHDESTRYVLSDQAIVGLSCKQPTTTEEIYDTIA 402

Query: 124 RTDINFEMGLNXXXXXXXX--XXCSHLNDIYDLLANKLVNRGDIYSVIIQKCLGQNGICQ 181
             D+  E   +            CSHL+DIY ++ +KL    D+  V+++KCLG NG C 
Sbjct: 403 HIDLATESSPSLSSSVQSPYPVICSHLDDIYKMILDKLAKLDDLLPVVLKKCLGTNGTCP 462

Query: 182 LSIFNYALLVNGSPRPTS--VHKHSRLKNLKQ-FSRKASRDLFVQKFSCKAPVYHNCRIY 238
           +S+FNY+LLVN   + +S    K +  KN KQ F+RKASR+LFV+KFSCKAPVYHNCRIY
Sbjct: 463 ISVFNYSLLVNFKTKLSSHSAPKQNGHKNFKQQFTRKASRELFVKKFSCKAPVYHNCRIY 522

Query: 239 ANDGRLLCYCDRKKLEWYLSRDLAKLVDDDPP 270
           ANDGRLLCYCD++KLEWYL+R LAKLV+++PP
Sbjct: 523 ANDGRLLCYCDKRKLEWYLNRGLAKLVEENPP 554



 Score =  163 bits (413), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 101/258 (39%), Positives = 138/258 (53%), Gaps = 60/258 (23%)

Query: 271 EKYKRKIAAEYGIPLYVRSVIHPREKN-------EEQT---EEGGVSPLQLRTAAMALLR 320
           E+YK++IA E+GIPL+VR V+  +E         +E T   E+ GVSPL LR+AAMALLR
Sbjct: 633 ERYKKQIATEFGIPLFVRRVLDSKEAQGTSSLVEDESTGDSEDAGVSPLHLRSAAMALLR 692

Query: 321 HGPRMPLDRREELTEST----------------AAVPQLENHV--------------ACA 350
           HG RMP  RREEL ++                 A +  L  H               +  
Sbjct: 693 HGNRMPSSRREELLQTVKMYYGGRDLSEEDLEKALLIGLSPHERRKLERKKGVSFKHSAE 752

Query: 351 TGDEDALNDDAHDGELLMEKDDLGNPLLASDLAVDAAISNGDYNEGGNSLNVDNSLSRTL 410
               D   D+ +DGE L + + +        + V+ +    D  +G +  +    L+ T 
Sbjct: 753 VAGMDKQEDENNDGEALADFEKI--------MTVERSTVVDDSGDGTSEGDGAKELNDTQ 804

Query: 411 PNGVSDLFDPSKYEESTLAKHNSKLSLLGHGPHGNLVVEHLLKEFGEEGIGEFCQRWRQV 470
            NG            +TL + NSKLSLLGHGPHG  +VE+LL+E GE+G+ +FCQRWR+V
Sbjct: 805 CNG------------NTLHQQNSKLSLLGHGPHGKQIVEYLLREHGEDGVRDFCQRWRKV 852

Query: 471 FVDAVNPRFLPGGWDVKH 488
           FVDAV+PR LPGGW+V H
Sbjct: 853 FVDAVHPRHLPGGWNVSH 870



 Score =  140 bits (354), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 61/72 (84%), Positives = 69/72 (95%)

Query: 1   MGILRPVFANPSICKVFHGADNDILWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLE 60
           M ILRPVF++P+ICKVFHGADND++WLQRDFHIYVVN+FDT+KACEVLSKPQ+SLAYLLE
Sbjct: 180 MSILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVVNMFDTAKACEVLSKPQRSLAYLLE 239

Query: 61  TYCGVVTNKLLQ 72
           T CGV TNKLLQ
Sbjct: 240 TVCGVATNKLLQ 251


>AT2G32415.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H fold protein with HRDC domain | chr2:13761307-13765421
           REVERSE LENGTH=891
          Length = 891

 Score =  236 bits (602), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 118/212 (55%), Positives = 149/212 (70%), Gaps = 5/212 (2%)

Query: 64  GVVTNKLLQFQHTVRQLCTWRDLMARIHDESLKYVLSDQAIGALASQPPATHTEIYKTIA 123
           G  +N  L  +  VR+LC WRDLM RIHDES +YVLSDQAI  L+ + P T  EIY TIA
Sbjct: 343 GDKSNISLNAEELVRKLCAWRDLMGRIHDESTRYVLSDQAIVGLSCKQPTTTEEIYDTIA 402

Query: 124 RTDINFEMGLNXXXXXXXX--XXCSHLNDIYDLLANKLVNRGDIYSVIIQKCLGQNGICQ 181
             D+  E   +            CSHL+DIY ++ +KL    D+  V+++KCLG NG C 
Sbjct: 403 HIDLATESSPSLSSSVQSPYPVICSHLDDIYKMILDKLAKLDDLLPVVLKKCLGTNGTCP 462

Query: 182 LSIFNYALLVNGSPRPTS--VHKHSRLKNLKQ-FSRKASRDLFVQKFSCKAPVYHNCRIY 238
           +S+FNY+LLVN   + +S    K +  KN KQ F+RKASR+LFV+KFSCKAPVYHNCRIY
Sbjct: 463 ISVFNYSLLVNFKTKLSSHSAPKQNGHKNFKQQFTRKASRELFVKKFSCKAPVYHNCRIY 522

Query: 239 ANDGRLLCYCDRKKLEWYLSRDLAKLVDDDPP 270
           ANDGRLLCYCD++KLEWYL+R LAKLV+++PP
Sbjct: 523 ANDGRLLCYCDKRKLEWYLNRGLAKLVEENPP 554



 Score =  191 bits (485), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 116/277 (41%), Positives = 155/277 (55%), Gaps = 62/277 (22%)

Query: 271 EKYKRKIAAEYGIPLYVRSVIHPREKN-------EEQT---EEGGVSPLQLRTAAMALLR 320
           E+YK++IA E+GIPL+VR V+  +E         +E T   E+ GVSPL LR+AAMALLR
Sbjct: 633 ERYKKQIATEFGIPLFVRRVLDSKEAQGTSSLVEDESTGDSEDAGVSPLHLRSAAMALLR 692

Query: 321 HGPRMPLDRREELTESTAAV------------------------PQLE-------NHVAC 349
           HG RMP  RREEL ++                             +LE        H A 
Sbjct: 693 HGNRMPSSRREELLQTVKMYYGGRDLSEEDLEKALLIGLSPHERRKLERKKGVSFKHSAE 752

Query: 350 ATGDEDALNDDAHDGELLMEKDDLGNPLLASDLAVDAAISNGDYNEGGNSLNVDNSLSRT 409
             G  D   D+ +DGE L + + +        + V+ +    D  +G +  +    L+ T
Sbjct: 753 VAG-MDKQEDENNDGEALADFEKI--------MTVERSTVVDDSGDGTSEGDGAKELNDT 803

Query: 410 LPNGVSDLFDPSKYEESTLAKHNSKLSLLGHGPHGNLVVEHLLKEFGEEGIGEFCQRWRQ 469
             NG            +TL + NSKLSLLGHGPHG  +VE+LL+E GE+G+ +FCQRWR+
Sbjct: 804 QCNG------------NTLHQQNSKLSLLGHGPHGKQIVEYLLREHGEDGVRDFCQRWRK 851

Query: 470 VFVDAVNPRFLPGGWDVKHSGRREFGKFSVYNTDKRV 506
           VFVDAV+PR LPGGW+V HSGRR+FG+FSVYN  KR+
Sbjct: 852 VFVDAVHPRHLPGGWNVSHSGRRDFGEFSVYNPTKRL 888



 Score =  140 bits (354), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 61/72 (84%), Positives = 69/72 (95%)

Query: 1   MGILRPVFANPSICKVFHGADNDILWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLE 60
           M ILRPVF++P+ICKVFHGADND++WLQRDFHIYVVN+FDT+KACEVLSKPQ+SLAYLLE
Sbjct: 180 MSILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVVNMFDTAKACEVLSKPQRSLAYLLE 239

Query: 61  TYCGVVTNKLLQ 72
           T CGV TNKLLQ
Sbjct: 240 TVCGVATNKLLQ 251


>AT1G54440.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H fold protein with HRDC domain | chr1:20323284-20327931
           FORWARD LENGTH=637
          Length = 637

 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 46/96 (47%), Positives = 59/96 (61%), Gaps = 2/96 (2%)

Query: 4   LRPVFANPSICKVFHGADNDILWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLETYC 63
           LR +F +P   KV HGAD DI+WLQRDF IYV NLFDT +A  VL   + SL +LL+ YC
Sbjct: 180 LRELFKDPKKKKVIHGADRDIIWLQRDFGIYVCNLFDTGQASRVLKLERNSLEFLLKHYC 239

Query: 64  GVVTNKLLQFQHTVRQLCTWRDLMARIHDESLKYVL 99
           GV  NK  ++Q    ++    D+M R   E   Y+L
Sbjct: 240 GVAANK--EYQKADWRIRPLPDVMKRYAREDTHYLL 273


>AT1G54440.2 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H fold protein with HRDC domain | chr1:20323284-20327931
           FORWARD LENGTH=639
          Length = 639

 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 46/96 (47%), Positives = 59/96 (61%), Gaps = 2/96 (2%)

Query: 4   LRPVFANPSICKVFHGADNDILWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLETYC 63
           LR +F +P   KV HGAD DI+WLQRDF IYV NLFDT +A  VL   + SL +LL+ YC
Sbjct: 180 LRELFKDPKKKKVIHGADRDIIWLQRDFGIYVCNLFDTGQASRVLKLERNSLEFLLKHYC 239

Query: 64  GVVTNKLLQFQHTVRQLCTWRDLMARIHDESLKYVL 99
           GV  NK  ++Q    ++    D+M R   E   Y+L
Sbjct: 240 GVAANK--EYQKADWRIRPLPDVMKRYAREDTHYLL 273


>AT5G35910.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H fold protein with HRDC domain | chr5:14029871-14035405
           REVERSE LENGTH=870
          Length = 870

 Score = 88.6 bits (218), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 44/96 (45%), Positives = 60/96 (62%), Gaps = 2/96 (2%)

Query: 4   LRPVFANPSICKVFHGADNDILWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLETYC 63
           LR +F +P   KV HGAD DI+WLQRDF IYV NLFDT +A  VL+  + SL +LL+ +C
Sbjct: 325 LREIFKDPKKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRVLNLERNSLEFLLQHFC 384

Query: 64  GVVTNKLLQFQHTVRQLCTWRDLMARIHDESLKYVL 99
           GV  NK  ++Q+   ++    + M R   E   Y+L
Sbjct: 385 GVTANK--EYQNADWRIRPLPEEMTRYAREDTHYLL 418