Miyakogusa Predicted Gene

Lj3g3v2905160.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2905160.1 Non Chatacterized Hit- tr|I1KFD3|I1KFD3_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,74.59,0,HRDC,Helicase/RNase D C-terminal, HRDC domain; no
description,NULL; POLYMYOSITIS/SCLERODERMA
AUTOANT,NODE_61206_length_2535_cov_8.537278.path2.1
         (712 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G32415.2 | Symbols:  | Polynucleotidyl transferase, ribonucle...   862   0.0  
AT2G32415.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...   862   0.0  
AT5G35910.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...   163   4e-40
AT1G54440.2 | Symbols:  | Polynucleotidyl transferase, ribonucle...   158   1e-38
AT1G54440.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...   158   1e-38

>AT2G32415.2 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H fold protein with HRDC domain | chr2:13761386-13765421
           REVERSE LENGTH=872
          Length = 872

 Score =  862 bits (2228), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/728 (58%), Positives = 529/728 (72%), Gaps = 53/728 (7%)

Query: 1   MGILRPVFANPSICKVFHGADNDILWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLE 60
           M ILRPVF++P+ICKVFHGADND++WLQRDFHIYVVN+FDT+KACEVLSKPQ+SLAYLLE
Sbjct: 180 MSILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVVNMFDTAKACEVLSKPQRSLAYLLE 239

Query: 61  TYCGVVTNKLLQREDWRQRPLSAEMLHYALTDAHYLLYIANCMINELRQLDNENSGSDDK 120
           T CGV TNKLLQREDWRQRPLS EM+ YA TDAHYLLYIA+ +  EL+QL  ++S  DD+
Sbjct: 240 TVCGVATNKLLQREDWRQRPLSEEMVRYARTDAHYLLYIADSLTTELKQLATDSSSPDDR 299

Query: 121 IQFVLEACRRSNMICLQLFTKDIEASPGESSVLSLFSRHVSSQ-DVPSISNETQFQHTVR 179
             F+LEA RRSNM CLQL+TK+ E  PG ++  S+  RH++   D  +IS     +  VR
Sbjct: 300 FHFLLEASRRSNMTCLQLYTKETEDFPGSAASSSIIYRHLNGHGDKSNIS--LNAEELVR 357

Query: 180 QLCTWRDLMARIHDESLKYVLSDQAIGALASQPPATHTEIYKTIARTDINFEMGLNXXXX 239
           +LC WRDLM RIHDES +YVLSDQAI  L+ + P T  EIY TIA  D+  E   +    
Sbjct: 358 KLCAWRDLMGRIHDESTRYVLSDQAIVGLSCKQPTTTEEIYDTIAHIDLATESSPSLSSS 417

Query: 240 XXXX--XXCSHLNDIYDLLANKLVNRGDIYSVIIQKCLGQNGICQLSIFNYALLVNGSPR 297
                   CSHL+DIY ++ +KL    D+  V+++KCLG NG C +S+FNY+LLVN   +
Sbjct: 418 VQSPYPVICSHLDDIYKMILDKLAKLDDLLPVVLKKCLGTNGTCPISVFNYSLLVNFKTK 477

Query: 298 PTS--VHKHSRLKNLKQ-FSRKASRDLFVQKFSCKAPVYHNCRIYANDGRLLCYCDRKKL 354
            +S    K +  KN KQ F+RKASR+LFV+KFSCKAPVYHNCRIYANDGRLLCYCD++KL
Sbjct: 478 LSSHSAPKQNGHKNFKQQFTRKASRELFVKKFSCKAPVYHNCRIYANDGRLLCYCDKRKL 537

Query: 355 EWYLSRDLAKLVDDDPPGIMLLFEPKGRPEDEDNDFYIQSKKNICVGCGEGNHYLRYRII 414
           EWYL+R LAKLV+++PP IMLLFEPKGRPEDE NDFYIQ+K+NICVGCGEG HYLRYRII
Sbjct: 538 EWYLNRGLAKLVEENPPAIMLLFEPKGRPEDEGNDFYIQTKRNICVGCGEGKHYLRYRII 597

Query: 415 PSCYRIHFPEHLKSHRSHDIVLLCVDCHEIAHAAAEKYKRKIAAEYGIPLYVRSVIHPRE 474
           PSCYR+HFPEHLKSHRSHDIVLLCVDCHE+AHAAAE+YK++IA E+GIPL+VR V+  +E
Sbjct: 598 PSCYRVHFPEHLKSHRSHDIVLLCVDCHEVAHAAAERYKKQIATEFGIPLFVRRVLDSKE 657

Query: 475 KN-------EEQT---EEGGVSPLQLRTAAMALLRHGPRMPLDRREELTEIVKRYYGGRE 524
                    +E T   E+ GVSPL LR+AAMALLRHG RMP  RREEL + VK YYGGR+
Sbjct: 658 AQGTSSLVEDESTGDSEDAGVSPLHLRSAAMALLRHGNRMPSSRREELLQTVKMYYGGRD 717

Query: 525 ITEEDLEGALQVGMTPQERRRFEKKRGFSFKHSTDSTAAVPQLENDVGCAPGDEDALNDD 584
           ++EEDLE AL +G++P ERR+ E+K+G SFKHS +                   D   D+
Sbjct: 718 LSEEDLEKALLIGLSPHERRKLERKKGVSFKHSAEVAGM---------------DKQEDE 762

Query: 585 AHDGELLMEKDDLGNPLLASDLAVDAAISNGDYNEGGNSLNVDNSLSRTLPNGVSDLFDP 644
            +DGE L + + +        + V+ +    D  +G +  +    L+ T  NG       
Sbjct: 763 NNDGEALADFEKI--------MTVERSTVVDDSGDGTSEGDGAKELNDTQCNG------- 807

Query: 645 SKYEESTLAKHNSKLSLLGHGPHGNLVVEHLLKEFGEEGIGEFCQRWRQVFVDAVNPRFL 704
                +TL + NSKLSLLGHGPHG  +VE+LL+E GE+G+ +FCQRWR+VFVDAV+PR L
Sbjct: 808 -----NTLHQQNSKLSLLGHGPHGKQIVEYLLREHGEDGVRDFCQRWRKVFVDAVHPRHL 862

Query: 705 PGGWDVKH 712
           PGGW+V H
Sbjct: 863 PGGWNVSH 870


>AT2G32415.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H fold protein with HRDC domain | chr2:13761307-13765421
           REVERSE LENGTH=891
          Length = 891

 Score =  862 bits (2228), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/728 (58%), Positives = 529/728 (72%), Gaps = 53/728 (7%)

Query: 1   MGILRPVFANPSICKVFHGADNDILWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLE 60
           M ILRPVF++P+ICKVFHGADND++WLQRDFHIYVVN+FDT+KACEVLSKPQ+SLAYLLE
Sbjct: 180 MSILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVVNMFDTAKACEVLSKPQRSLAYLLE 239

Query: 61  TYCGVVTNKLLQREDWRQRPLSAEMLHYALTDAHYLLYIANCMINELRQLDNENSGSDDK 120
           T CGV TNKLLQREDWRQRPLS EM+ YA TDAHYLLYIA+ +  EL+QL  ++S  DD+
Sbjct: 240 TVCGVATNKLLQREDWRQRPLSEEMVRYARTDAHYLLYIADSLTTELKQLATDSSSPDDR 299

Query: 121 IQFVLEACRRSNMICLQLFTKDIEASPGESSVLSLFSRHVSSQ-DVPSISNETQFQHTVR 179
             F+LEA RRSNM CLQL+TK+ E  PG ++  S+  RH++   D  +IS     +  VR
Sbjct: 300 FHFLLEASRRSNMTCLQLYTKETEDFPGSAASSSIIYRHLNGHGDKSNIS--LNAEELVR 357

Query: 180 QLCTWRDLMARIHDESLKYVLSDQAIGALASQPPATHTEIYKTIARTDINFEMGLNXXXX 239
           +LC WRDLM RIHDES +YVLSDQAI  L+ + P T  EIY TIA  D+  E   +    
Sbjct: 358 KLCAWRDLMGRIHDESTRYVLSDQAIVGLSCKQPTTTEEIYDTIAHIDLATESSPSLSSS 417

Query: 240 XXXX--XXCSHLNDIYDLLANKLVNRGDIYSVIIQKCLGQNGICQLSIFNYALLVNGSPR 297
                   CSHL+DIY ++ +KL    D+  V+++KCLG NG C +S+FNY+LLVN   +
Sbjct: 418 VQSPYPVICSHLDDIYKMILDKLAKLDDLLPVVLKKCLGTNGTCPISVFNYSLLVNFKTK 477

Query: 298 PTS--VHKHSRLKNLKQ-FSRKASRDLFVQKFSCKAPVYHNCRIYANDGRLLCYCDRKKL 354
            +S    K +  KN KQ F+RKASR+LFV+KFSCKAPVYHNCRIYANDGRLLCYCD++KL
Sbjct: 478 LSSHSAPKQNGHKNFKQQFTRKASRELFVKKFSCKAPVYHNCRIYANDGRLLCYCDKRKL 537

Query: 355 EWYLSRDLAKLVDDDPPGIMLLFEPKGRPEDEDNDFYIQSKKNICVGCGEGNHYLRYRII 414
           EWYL+R LAKLV+++PP IMLLFEPKGRPEDE NDFYIQ+K+NICVGCGEG HYLRYRII
Sbjct: 538 EWYLNRGLAKLVEENPPAIMLLFEPKGRPEDEGNDFYIQTKRNICVGCGEGKHYLRYRII 597

Query: 415 PSCYRIHFPEHLKSHRSHDIVLLCVDCHEIAHAAAEKYKRKIAAEYGIPLYVRSVIHPRE 474
           PSCYR+HFPEHLKSHRSHDIVLLCVDCHE+AHAAAE+YK++IA E+GIPL+VR V+  +E
Sbjct: 598 PSCYRVHFPEHLKSHRSHDIVLLCVDCHEVAHAAAERYKKQIATEFGIPLFVRRVLDSKE 657

Query: 475 KN-------EEQT---EEGGVSPLQLRTAAMALLRHGPRMPLDRREELTEIVKRYYGGRE 524
                    +E T   E+ GVSPL LR+AAMALLRHG RMP  RREEL + VK YYGGR+
Sbjct: 658 AQGTSSLVEDESTGDSEDAGVSPLHLRSAAMALLRHGNRMPSSRREELLQTVKMYYGGRD 717

Query: 525 ITEEDLEGALQVGMTPQERRRFEKKRGFSFKHSTDSTAAVPQLENDVGCAPGDEDALNDD 584
           ++EEDLE AL +G++P ERR+ E+K+G SFKHS +                   D   D+
Sbjct: 718 LSEEDLEKALLIGLSPHERRKLERKKGVSFKHSAEVAGM---------------DKQEDE 762

Query: 585 AHDGELLMEKDDLGNPLLASDLAVDAAISNGDYNEGGNSLNVDNSLSRTLPNGVSDLFDP 644
            +DGE L + + +        + V+ +    D  +G +  +    L+ T  NG       
Sbjct: 763 NNDGEALADFEKI--------MTVERSTVVDDSGDGTSEGDGAKELNDTQCNG------- 807

Query: 645 SKYEESTLAKHNSKLSLLGHGPHGNLVVEHLLKEFGEEGIGEFCQRWRQVFVDAVNPRFL 704
                +TL + NSKLSLLGHGPHG  +VE+LL+E GE+G+ +FCQRWR+VFVDAV+PR L
Sbjct: 808 -----NTLHQQNSKLSLLGHGPHGKQIVEYLLREHGEDGVRDFCQRWRKVFVDAVHPRHL 862

Query: 705 PGGWDVKH 712
           PGGW+V H
Sbjct: 863 PGGWNVSH 870


>AT5G35910.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H fold protein with HRDC domain | chr5:14029871-14035405
           REVERSE LENGTH=870
          Length = 870

 Score =  163 bits (412), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 86/210 (40%), Positives = 123/210 (58%), Gaps = 13/210 (6%)

Query: 4   LRPVFANPSICKVFHGADNDILWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLETYC 63
           LR +F +P   KV HGAD DI+WLQRDF IYV NLFDT +A  VL+  + SL +LL+ +C
Sbjct: 325 LREIFKDPKKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRVLNLERNSLEFLLQHFC 384

Query: 64  GVVTNKLLQREDWRQRPLSAEMLHYALTDAHYLLYIANCMINELRQLDNENSGSDDKIQF 123
           GV  NK  Q  DWR RPL  EM  YA  D HYLLYI + +  EL+++  +++ +D  +  
Sbjct: 385 GVTANKEYQNADWRIRPLPEEMTRYAREDTHYLLYIYDLIKLELQRMAKDDAHTDSPL-- 442

Query: 124 VLEACRRSNMICLQLFTKDIEASPGESSVLSLFSRHVSSQDVPSISNETQFQHTVRQLCT 183
            LE  +RS  +C QL+ K++     E+S L ++    +  +   ++        V  LC 
Sbjct: 443 -LEVYKRSYDVCTQLYEKELLT---ENSYLHVYGLQAAGFNAAQLA-------IVAGLCE 491

Query: 184 WRDLMARIHDESLKYVLSDQAIGALASQPP 213
           WRD +AR  DES  YVL ++ +  +A + P
Sbjct: 492 WRDFIARAEDESTGYVLPNKVLLEIAKEMP 521


>AT1G54440.2 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H fold protein with HRDC domain | chr1:20323284-20327931
           FORWARD LENGTH=639
          Length = 639

 Score =  158 bits (400), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 88/220 (40%), Positives = 122/220 (55%), Gaps = 13/220 (5%)

Query: 4   LRPVFANPSICKVFHGADNDILWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLETYC 63
           LR +F +P   KV HGAD DI+WLQRDF IYV NLFDT +A  VL   + SL +LL+ YC
Sbjct: 180 LRELFKDPKKKKVIHGADRDIIWLQRDFGIYVCNLFDTGQASRVLKLERNSLEFLLKHYC 239

Query: 64  GVVTNKLLQREDWRQRPLSAEMLHYALTDAHYLLYIANCMINELRQLDNENSGSDDKIQF 123
           GV  NK  Q+ DWR RPL   M  YA  D HYLLYI + M  EL  +  E+  SD  +  
Sbjct: 240 GVAANKEYQKADWRIRPLPDVMKRYAREDTHYLLYIYDVMRMELHTMAKEDEQSDSPL-- 297

Query: 124 VLEACRRSNMICLQLFTKDIEASPGESSVLSLFSRHVSSQDVPSISNETQFQHTVRQLCT 183
            +E  +RS  +C+QL+ K++       S L ++     + +   +S        V  LC 
Sbjct: 298 -VEVYKRSYDVCMQLYEKELWT---RDSYLHVYGVQTGNLNAVQLS-------IVAGLCE 346

Query: 184 WRDLMARIHDESLKYVLSDQAIGALASQPPATHTEIYKTI 223
           WRD +AR  DES  YVL ++ +  +A + P    ++ + +
Sbjct: 347 WRDRIARADDESTGYVLPNKTLFDIAKEMPIVVAQLRRLL 386


>AT1G54440.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H fold protein with HRDC domain | chr1:20323284-20327931
           FORWARD LENGTH=637
          Length = 637

 Score =  158 bits (400), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 88/220 (40%), Positives = 122/220 (55%), Gaps = 13/220 (5%)

Query: 4   LRPVFANPSICKVFHGADNDILWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLETYC 63
           LR +F +P   KV HGAD DI+WLQRDF IYV NLFDT +A  VL   + SL +LL+ YC
Sbjct: 180 LRELFKDPKKKKVIHGADRDIIWLQRDFGIYVCNLFDTGQASRVLKLERNSLEFLLKHYC 239

Query: 64  GVVTNKLLQREDWRQRPLSAEMLHYALTDAHYLLYIANCMINELRQLDNENSGSDDKIQF 123
           GV  NK  Q+ DWR RPL   M  YA  D HYLLYI + M  EL  +  E+  SD  +  
Sbjct: 240 GVAANKEYQKADWRIRPLPDVMKRYAREDTHYLLYIYDVMRMELHTMAKEDEQSDSPL-- 297

Query: 124 VLEACRRSNMICLQLFTKDIEASPGESSVLSLFSRHVSSQDVPSISNETQFQHTVRQLCT 183
            +E  +RS  +C+QL+ K++       S L ++     + +   +S        V  LC 
Sbjct: 298 -VEVYKRSYDVCMQLYEKELWT---RDSYLHVYGVQTGNLNAVQLS-------IVAGLCE 346

Query: 184 WRDLMARIHDESLKYVLSDQAIGALASQPPATHTEIYKTI 223
           WRD +AR  DES  YVL ++ +  +A + P    ++ + +
Sbjct: 347 WRDRIARADDESTGYVLPNKTLFDIAKEMPIVVAQLRRLL 386