Miyakogusa Predicted Gene

Lj3g3v2905120.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2905120.1 Non Chatacterized Hit- tr|O49369|O49369_ARATH
Putative uncharacterized protein AT4g32210
OS=Arabidop,42.64,2e-18,SUCCINATE DEHYDROGENASE CYTOCHROME B560
SUBUNIT,NULL; seg,NULL; Fumarate reductase respiratory
compl,CUFF.45149.1
         (219 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G09600.3 | Symbols: SDH3-1 | succinate dehydrogenase 3-1 | ch...    97   7e-21
AT5G09600.1 | Symbols: SDH3-1 | succinate dehydrogenase 3-1 | ch...    97   7e-21
AT4G32210.1 | Symbols: SDH3-2 | succinate dehydrogenase 3-2 | ch...    97   7e-21
AT5G09600.2 | Symbols: SDH3-1 | succinate dehydrogenase 3-1 | ch...    97   8e-21

>AT5G09600.3 | Symbols: SDH3-1 | succinate dehydrogenase 3-1 |
           chr5:2979220-2980527 FORWARD LENGTH=213
          Length = 213

 Score = 97.4 bits (241), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 55/129 (42%), Positives = 78/129 (60%), Gaps = 10/129 (7%)

Query: 94  MARSFQRGAGPEPLGLTSHKRFMSDTSS--KTTETKPY--GLRPLSPHLPVYQPQLSSTL 149
           + RSF+       L + + KR  S  S   KTT+ +P     RPLSPHL VYQPQ++S L
Sbjct: 89  LTRSFR------ALDVGTSKRLFSTISGDIKTTQEEPKIKSFRPLSPHLSVYQPQMNSML 142

Query: 150 SIFNRIAGASLAAIIVAFYMIYMKMGLISLTYDSFYQFVFYSSKLNLLAIEISALATTYH 209
           SIFNRI+G  L  +  A Y++Y+KMG+I LTY SFYQ ++++ +   +   ++ALA  YH
Sbjct: 143 SIFNRISGVYLTGVTFAGYLLYLKMGMICLTYPSFYQVLYHTQQQLPVITSVTALAAIYH 202

Query: 210 LYSAIRHLL 218
              +   LL
Sbjct: 203 TIKSTHSLL 211


>AT5G09600.1 | Symbols: SDH3-1 | succinate dehydrogenase 3-1 |
           chr5:2979220-2980527 FORWARD LENGTH=213
          Length = 213

 Score = 97.4 bits (241), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 55/129 (42%), Positives = 78/129 (60%), Gaps = 10/129 (7%)

Query: 94  MARSFQRGAGPEPLGLTSHKRFMSDTSS--KTTETKPY--GLRPLSPHLPVYQPQLSSTL 149
           + RSF+       L + + KR  S  S   KTT+ +P     RPLSPHL VYQPQ++S L
Sbjct: 89  LTRSFR------ALDVGTSKRLFSTISGDIKTTQEEPKIKSFRPLSPHLSVYQPQMNSML 142

Query: 150 SIFNRIAGASLAAIIVAFYMIYMKMGLISLTYDSFYQFVFYSSKLNLLAIEISALATTYH 209
           SIFNRI+G  L  +  A Y++Y+KMG+I LTY SFYQ ++++ +   +   ++ALA  YH
Sbjct: 143 SIFNRISGVYLTGVTFAGYLLYLKMGMICLTYPSFYQVLYHTQQQLPVITSVTALAAIYH 202

Query: 210 LYSAIRHLL 218
              +   LL
Sbjct: 203 TIKSTHSLL 211


>AT4G32210.1 | Symbols: SDH3-2 | succinate dehydrogenase 3-2 |
           chr4:15556732-15558041 REVERSE LENGTH=213
          Length = 213

 Score = 97.4 bits (241), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 55/129 (42%), Positives = 78/129 (60%), Gaps = 10/129 (7%)

Query: 94  MARSFQRGAGPEPLGLTSHKRFMSDTSS--KTTETKPY--GLRPLSPHLPVYQPQLSSTL 149
           + RSF+       L + + KR  S  S   KTT+ +P     RPLSPHL VYQPQ++S L
Sbjct: 89  LTRSFR------ALDVGTSKRLFSTISGDIKTTQEEPKIKSFRPLSPHLSVYQPQMNSML 142

Query: 150 SIFNRIAGASLAAIIVAFYMIYMKMGLISLTYDSFYQFVFYSSKLNLLAIEISALATTYH 209
           SIFNRI+G  L  +  A Y++Y+KMG+I LTY SFYQ ++++ +   +   ++ALA  YH
Sbjct: 143 SIFNRISGVYLTGVTFAGYLLYLKMGMICLTYPSFYQVLYHTQQQLPVITSVTALAAIYH 202

Query: 210 LYSAIRHLL 218
              +   LL
Sbjct: 203 TIKSTHSLL 211


>AT5G09600.2 | Symbols: SDH3-1 | succinate dehydrogenase 3-1 |
           chr5:2979777-2980527 FORWARD LENGTH=186
          Length = 186

 Score = 97.1 bits (240), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 55/129 (42%), Positives = 78/129 (60%), Gaps = 10/129 (7%)

Query: 94  MARSFQRGAGPEPLGLTSHKRFMSDTSS--KTTETKPY--GLRPLSPHLPVYQPQLSSTL 149
           + RSF+       L + + KR  S  S   KTT+ +P     RPLSPHL VYQPQ++S L
Sbjct: 62  LTRSFR------ALDVGTSKRLFSTISGDIKTTQEEPKIKSFRPLSPHLSVYQPQMNSML 115

Query: 150 SIFNRIAGASLAAIIVAFYMIYMKMGLISLTYDSFYQFVFYSSKLNLLAIEISALATTYH 209
           SIFNRI+G  L  +  A Y++Y+KMG+I LTY SFYQ ++++ +   +   ++ALA  YH
Sbjct: 116 SIFNRISGVYLTGVTFAGYLLYLKMGMICLTYPSFYQVLYHTQQQLPVITSVTALAAIYH 175

Query: 210 LYSAIRHLL 218
              +   LL
Sbjct: 176 TIKSTHSLL 184