Miyakogusa Predicted Gene

Lj3g3v2888650.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2888650.1 Non Chatacterized Hit- tr|I1LRS5|I1LRS5_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.26747
PE,56.19,3e-17,seg,NULL; TraB,Pheromone shutdown, TraB,CUFF.44911.1
         (105 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G05270.1 | Symbols:  | TraB family protein | chr1:1531806-153...    78   1e-15
AT2G32340.1 | Symbols:  | TraB family protein | chr2:13732247-13...    72   6e-14

>AT1G05270.1 | Symbols:  | TraB family protein |
           chr1:1531806-1534305 REVERSE LENGTH=371
          Length = 371

 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/105 (46%), Positives = 59/105 (56%), Gaps = 14/105 (13%)

Query: 1   MPLLHKTKLLCYCLFPPFLKLSGNFDDLIKIGKMLKHSDRVXXXXXXXXXXXXXHCIQIL 60
           MPL HK K L   LF     L G  +    + KMLK  D V               IQ +
Sbjct: 230 MPLWHKVKFLYSILFQAVF-LPGAEE----LEKMLKDMDNVDMVTL---------VIQEM 275

Query: 61  SKEFPTAIETLVDERDQYMSSRLLKFASQRRSVVAVVGKGHLEGI 105
           SKEFPT ++T+V ERDQYM+S LL+ AS   SVVAV+GKGH+ GI
Sbjct: 276 SKEFPTLMDTIVHERDQYMASSLLRVASDHSSVVAVIGKGHINGI 320


>AT2G32340.1 | Symbols:  | TraB family protein |
           chr2:13732247-13734361 FORWARD LENGTH=360
          Length = 360

 Score = 72.4 bits (176), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 47/105 (44%), Positives = 62/105 (59%), Gaps = 14/105 (13%)

Query: 1   MPLLHKTKLLCYCLFPPFLKLSGNFDDLIKIGKMLKHSDRVXXXXXXXXXXXXXHCIQIL 60
           MPL HK KL+ Y +    + L  N  +L K+ K L   D +               IQ +
Sbjct: 221 MPLWHKIKLV-YSIVSQAVFLP-NPKELEKMLKDLGDGDMLTL------------AIQEM 266

Query: 61  SKEFPTAIETLVDERDQYMSSRLLKFASQRRSVVAVVGKGHLEGI 105
           S EFPT +ETLV ERD+YM+ +LL+ AS+  SVVAVVG+GHL+GI
Sbjct: 267 STEFPTLMETLVHERDKYMAYQLLRIASEHSSVVAVVGRGHLQGI 311