Miyakogusa Predicted Gene

Lj3g3v2888640.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2888640.1 Non Chatacterized Hit- tr|I1GW99|I1GW99_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,30,3e-17,ZF_C3H1,Zinc finger, CCCH-type; seg,NULL; no
description,NULL; coiled-coil,NULL,CUFF.44936.1
         (444 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G21810.1 | Symbols:  | Zinc finger C-x8-C-x5-C-x3-H type fami...   145   8e-35

>AT3G21810.1 | Symbols:  | Zinc finger C-x8-C-x5-C-x3-H type family
           protein | chr3:7684852-7688360 FORWARD LENGTH=437
          Length = 437

 Score =  145 bits (365), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 101/289 (34%), Positives = 150/289 (51%), Gaps = 20/289 (6%)

Query: 7   FKTRLCVLYQR-GRCNRHNCSFAHGNAELXXXXXXXXXXXXXXXN------------DLR 53
           +KT+LC+L+ + G C+R NC+FAHGNAEL               +            DLR
Sbjct: 7   YKTKLCILFNKTGDCSRPNCTFAHGNAELRRPGESSFTGRRHNMDSDLRDRRHNMDSDLR 66

Query: 54  DKLDRRHLSPRRYSPARDARGRQAIHEYSPPRSLEXXXXXXXXXXXXQGITSQSDNAGSL 113
           D+L R   SP R  P+ D  GR+         S+             +    + D AG L
Sbjct: 67  DRLGR-QFSPER-RPSLDRSGRRVQRFSGHDNSMPFENRRDKDYRENRRFDERRDYAGGL 124

Query: 114 KVSDRVQDHVKEVKLLSSGSRNTLEEKLKKVHSDINTLENQKFQLTVYIDESVQEVDSLN 173
           KV +R++D  ++ +    G  N LEE+LK V  D+  L + K +L   ++    EVD L 
Sbjct: 125 KVGNRIEDRAEDGRNKFHGYNNVLEEQLKDVEMDVKMLTDDKLRLEASVERKAHEVDILT 184

Query: 174 SRIQELKAQLCNENEEYKRISSRIRKFVKVHNHNVQLQDELKRSQIRLERFGDQLVSDIS 233
           SRIQEL+ QL  E +E +RI+S  +KFVK +N  ++ QD+LKRS+ RL++ G+QL + ++
Sbjct: 185 SRIQELETQLDREKDECRRITSSSKKFVKEYNRFLRAQDDLKRSEARLQKLGNQLSTYLA 244

Query: 234 RIGANEEDLSVDIVS----NGDNTGLPPIIKNNLNQNDTSPFKKRLHVE 278
               N  D+ +DIVS    NG N        N L QN +S  +K+ +V+
Sbjct: 245 GSEGNNRDVGLDIVSDEETNGRNLRTACDPHNEL-QNTSSLSRKKHYVD 292