Miyakogusa Predicted Gene

Lj3g3v2888310.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2888310.1 Non Chatacterized Hit- tr|I1KF92|I1KF92_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.40201
PE,55.73,2e-17,seg,NULL,CUFF.44881.1
         (115 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G09280.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    48   2e-06

>AT3G09280.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: endomembrane
           system; EXPRESSED IN: root; Has 31 Blast hits to 31
           proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa
           - 0; Fungi - 0; Plants - 31; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr3:2850920-2851258 REVERSE LENGTH=112
          Length = 112

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/40 (52%), Positives = 26/40 (65%)

Query: 72  RLGIKHHSIDKSEAGGGVIIGGFVTAIFAAVFAYIRVTRK 111
           R G  H ++++S AGGGVI+GG  T     VF YIR TRK
Sbjct: 56  RRGHHHSTVERSVAGGGVILGGLATTFLVVVFCYIRATRK 95