Miyakogusa Predicted Gene

Lj3g3v2873600.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2873600.1 tr|Q5W745|Q5W745_ORYSJ Os05g0331200 protein
OS=Oryza sativa subsp. japonica GN=OJ1005_D04.1 PE=2
SV=,74.55,2e-19,NADH DEHYDROGENASE-RELATED,NULL; FAD/NAD(P)-binding
domain,NULL; Pyr_redox_2,Pyridine nucleotide-dis,CUFF.44830.1
         (56 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G21490.1 | Symbols: NDB3 | NAD(P)H dehydrogenase B3 | chr4:11...   108   1e-24
AT4G05020.1 | Symbols: NDB2 | NAD(P)H dehydrogenase B2 | chr4:25...   104   1e-23
AT4G05020.2 | Symbols: NDB2 | NAD(P)H dehydrogenase B2 | chr4:25...   103   2e-23
AT2G20800.1 | Symbols: NDB4 | NAD(P)H dehydrogenase B4 | chr2:89...    99   8e-22
AT4G28220.1 | Symbols: NDB1 | NAD(P)H dehydrogenase B1 | chr4:13...    86   3e-18

>AT4G21490.1 | Symbols: NDB3 | NAD(P)H dehydrogenase B3 |
           chr4:11436495-11439326 REVERSE LENGTH=580
          Length = 580

 Score =  108 bits (269), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 46/56 (82%), Positives = 51/56 (91%)

Query: 1   MVVWSTGIGPRPEILEFMKQLGQINRRAIVTDEWLRVEGCDNIYALGDCATINQRR 56
           M+VWSTGIG RP I +FMKQ+GQ NRRA+ TDEWLRVEGCDNIYALGDCATINQR+
Sbjct: 322 MIVWSTGIGTRPVIKDFMKQIGQGNRRALATDEWLRVEGCDNIYALGDCATINQRK 377


>AT4G05020.1 | Symbols: NDB2 | NAD(P)H dehydrogenase B2 |
           chr4:2572752-2576222 FORWARD LENGTH=582
          Length = 582

 Score =  104 bits (259), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/56 (80%), Positives = 50/56 (89%)

Query: 1   MVVWSTGIGPRPEILEFMKQLGQINRRAIVTDEWLRVEGCDNIYALGDCATINQRR 56
           M+VWSTGIG RP I +FMKQ+GQ NRRA+ TDEWLRVEG DNIYALGDCATINQR+
Sbjct: 324 MIVWSTGIGTRPVIKDFMKQIGQGNRRALATDEWLRVEGTDNIYALGDCATINQRK 379


>AT4G05020.2 | Symbols: NDB2 | NAD(P)H dehydrogenase B2 |
           chr4:2572752-2576222 FORWARD LENGTH=619
          Length = 619

 Score =  103 bits (258), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/56 (80%), Positives = 50/56 (89%)

Query: 1   MVVWSTGIGPRPEILEFMKQLGQINRRAIVTDEWLRVEGCDNIYALGDCATINQRR 56
           M+VWSTGIG RP I +FMKQ+GQ NRRA+ TDEWLRVEG DNIYALGDCATINQR+
Sbjct: 324 MIVWSTGIGTRPVIKDFMKQIGQGNRRALATDEWLRVEGTDNIYALGDCATINQRK 379


>AT2G20800.1 | Symbols: NDB4 | NAD(P)H dehydrogenase B4 |
           chr2:8953252-8955699 REVERSE LENGTH=582
          Length = 582

 Score = 98.6 bits (244), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 42/56 (75%), Positives = 47/56 (83%)

Query: 1   MVVWSTGIGPRPEILEFMKQLGQINRRAIVTDEWLRVEGCDNIYALGDCATINQRR 56
           MVVWSTGIG RP I +FM+Q+GQ  RR + TDEWLRVEGCD +YALGD ATINQRR
Sbjct: 329 MVVWSTGIGSRPVIKDFMQQIGQGQRRVLATDEWLRVEGCDGVYALGDTATINQRR 384


>AT4G28220.1 | Symbols: NDB1 | NAD(P)H dehydrogenase B1 |
           chr4:13993078-13995651 FORWARD LENGTH=571
          Length = 571

 Score = 86.3 bits (212), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 48/56 (85%)

Query: 1   MVVWSTGIGPRPEILEFMKQLGQINRRAIVTDEWLRVEGCDNIYALGDCATINQRR 56
           +++WSTG+G RP I +FM+Q+GQ  RRA+ T+EWL+V GC+N+YA+GDCA+I QR+
Sbjct: 317 LILWSTGVGTRPVISDFMEQVGQGGRRAVATNEWLQVTGCENVYAVGDCASIAQRK 372