Miyakogusa Predicted Gene

Lj3g3v2873560.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2873560.1 Non Chatacterized Hit- tr|E5GBC6|E5GBC6_CUCME
Putative uncharacterized protein (Fragment)
OS=Cucumis,43.41,0.000000000000002,seg,NULL,CUFF.44827.1
         (341 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G28210.1 | Symbols: emb1923 | embryo defective 1923 | chr4:13...   233   1e-61

>AT4G28210.1 | Symbols: emb1923 | embryo defective 1923 |
           chr4:13990634-13991931 FORWARD LENGTH=348
          Length = 348

 Score =  233 bits (594), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 124/261 (47%), Positives = 156/261 (59%), Gaps = 5/261 (1%)

Query: 82  RGQGTMPERFRYLTKEAXXXXXXXXXXXXXXFLIYAWRAVLFELSNWRNAAFAIVRFIGY 141
           R + TMP+RFRYLTKEA              FL+YAWRAVLFELSNWR AAFAI+ F+G 
Sbjct: 92  RRESTMPDRFRYLTKEAPDSPIIWPWFVALGFLVYAWRAVLFELSNWRKAAFAILAFVGD 151

Query: 142 VLKYALAVVYRFIGNPITFSIRSFEDSLYAIRAFYSWIINCAPVPDXXXXXXXXXXXXXX 201
           + K+ALA+V+ FIG+PIT  I   E ++Y++RAFYS I+   PV +              
Sbjct: 152 LSKFALALVFHFIGDPITSLISLVETAMYSVRAFYSGIVAYTPVRELTTVILLASSVLAI 211

Query: 202 XXXXXPNCISNQPYVLTVSGLIGYAAVRGYVSEPLFWTLLLGIYGFSKFIKRRDDXXXXX 261
                P  IS QPYV+T++GL+GYAAV+ Y+SEP FWT+LLG+YG+S+ IK+RDD     
Sbjct: 212 GEAVAPESISKQPYVVTIAGLVGYAAVQSYISEPFFWTVLLGLYGYSRLIKKRDDVTSAL 271

Query: 262 XXXXXXXXXGEPWVRVLVIISFMALAIFQYS-KTLSEGKEVEEVGTQERXXXXXXXXXXX 320
                    GEPWVRV+ I  ++ALA++  S KT SE    EE     R           
Sbjct: 272 PSAAVLAGVGEPWVRVVAITGYLALAMYHNSTKTSSE----EESQILRRAPPMPLLAAAL 327

Query: 321 XXXXXXXAKWAGYRHLTWMIV 341
                  AKWAGYRHLTWMIV
Sbjct: 328 AIGVRLAAKWAGYRHLTWMIV 348