Miyakogusa Predicted Gene

Lj3g3v2862530.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2862530.1 Non Chatacterized Hit- tr|K4DCP0|K4DCP0_SOLLC
Uncharacterized protein OS=Solanum lycopersicum GN=Sol,55.95,4e-19,
,CUFF.44858.1
         (93 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G20820.1 | Symbols:  | unknown protein; Has 44 Blast hits to ...   107   2e-24
AT2G20820.2 | Symbols:  | unknown protein; Has 36 Blast hits to ...    63   5e-11

>AT2G20820.1 | Symbols:  | unknown protein; Has 44 Blast hits to
          44 proteins in 13 species: Archae - 0; Bacteria - 0;
          Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other
          Eukaryotes - 0 (source: NCBI BLink). |
          chr2:8964450-8965166 FORWARD LENGTH=93
          Length = 93

 Score =  107 bits (267), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 60/86 (69%), Gaps = 1/86 (1%)

Query: 1  MASLVRGAASLSRT-AISASKSPIQLLHRRNFAGAADHHGPAKVDFWKDPMSPSKWKEEH 59
          MAS  R A SL++  +   S     +  RR  AGAADHHG  KVDFWK P +P  WKEEH
Sbjct: 1  MASFARRAMSLAQIPSARISSGAASIGQRRCLAGAADHHGSTKVDFWKQPTNPGNWKEEH 60

Query: 60 FVIVSLTGWGLLIYGGYKLATGGKKE 85
          FV++SL+GWGLL Y GYKLATGGKKE
Sbjct: 61 FVLISLSGWGLLFYSGYKLATGGKKE 86


>AT2G20820.2 | Symbols:  | unknown protein; Has 36 Blast hits to
          36 proteins in 10 species: Archae - 0; Bacteria - 0;
          Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other
          Eukaryotes - 0 (source: NCBI BLink). |
          chr2:8964450-8965237 FORWARD LENGTH=102
          Length = 102

 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 38/62 (61%), Gaps = 1/62 (1%)

Query: 1  MASLVRGAASLSRT-AISASKSPIQLLHRRNFAGAADHHGPAKVDFWKDPMSPSKWKEEH 59
          MAS  R A SL++  +   S     +  RR  AGAADHHG  KVDFWK P +P  WKEEH
Sbjct: 1  MASFARRAMSLAQIPSARISSGAASIGQRRCLAGAADHHGSTKVDFWKQPTNPGNWKEEH 60

Query: 60 FV 61
          ++
Sbjct: 61 WI 62