Miyakogusa Predicted Gene

Lj3g3v2848980.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2848980.1 Non Chatacterized Hit- tr|I3SSI4|I3SSI4_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,97.12,0,HLH,Helix-loop-helix domain; seg,NULL; STEROL REGULATORY
ELEMENT-BINDING PROTEIN,NULL; no descriptio,CUFF.44806.1
         (243 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G68810.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   116   2e-26
AT3G25710.1 | Symbols: BHLH32, ATAIG1, TMO5 | basic helix-loop-h...   111   5e-25
AT2G41130.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   102   3e-22
AT3G56770.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    95   4e-20
AT2G40200.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    94   7e-20
AT4G38070.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    63   2e-10
AT5G46760.1 | Symbols:  | Basic helix-loop-helix (bHLH) DNA-bind...    51   6e-07
AT1G32640.1 | Symbols: ATMYC2, RD22BP1, JAI1, JIN1, MYC2, ZBF1 |...    50   2e-06
AT4G17880.1 | Symbols:  | Basic helix-loop-helix (bHLH) DNA-bind...    48   5e-06

>AT1G68810.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:25861289-25862882 FORWARD
           LENGTH=368
          Length = 368

 Score =  116 bits (290), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 65/173 (37%), Positives = 105/173 (60%), Gaps = 7/173 (4%)

Query: 51  RSIEALRNHSXXXXXXXXXINAHLDTLRTVIPGANKMDKASLLAEVITHLKELKTNAAQA 110
           +++ A ++HS         IN HL  LR+++P   K DKASLLAEVI H+KELK   +  
Sbjct: 170 KALAASKSHSEAERRRRERINNHLAKLRSILPNTTKTDKASLLAEVIQHVKELKRETSVI 229

Query: 111 SEGLMIPKDNDEIRV---EEQEGGLNGFPYSIRASLCCEYKPGLLSDIRQALDALHLMIM 167
           SE  ++P ++DE+ V   EE+E G   F   I+ASLCCE +  LL D+ + L A+ L  +
Sbjct: 230 SETNLVPTESDELTVAFTEEEETGDGRF--VIKASLCCEDRSDLLPDMIKTLKAMRLKTL 287

Query: 168 RAEIATLGGRMKNVFVIISCKEQNFEDAEYRQFLAGSVHQALRSVLDRFSVSQ 220
           +AEI T+GGR+KNV  +   +     +    ++  G++ +AL++V+++ +V +
Sbjct: 288 KAEITTVGGRVKNVLFVTGEESS--GEEVEEEYCIGTIEEALKAVMEKSNVEE 338


>AT3G25710.1 | Symbols: BHLH32, ATAIG1, TMO5 | basic
           helix-loop-helix 32 | chr3:9369598-9371096 FORWARD
           LENGTH=344
          Length = 344

 Score =  111 bits (277), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 68/201 (33%), Positives = 108/201 (53%), Gaps = 15/201 (7%)

Query: 7   THFQVSSGVIGSGYASSSSLVLDRDKGELVEAPMQLERKGVSPERSIEALRNHSXXXXXX 66
            H ++ S  +G      SS   D   GE++    +L  + V   +++ A ++HS      
Sbjct: 90  NHLRILSEALGPIMRRGSSFGFD---GEIMG---KLSAQEVMDAKALAASKSHSEAERRR 143

Query: 67  XXXINAHLDTLRTVIPGANKMDKASLLAEVITHLKELKTNAAQASEGLMIPKDNDEIRVE 126
              IN HL  LR+++P   K DKASLLAEVI H+KELK   +Q ++   +P + D++ V+
Sbjct: 144 RERINTHLAKLRSILPNTTKTDKASLLAEVIQHMKELKRQTSQITDTYQVPTECDDLTVD 203

Query: 127 ----EQEGGLNGFPYSIRASLCCEYKPGLLSDIRQALDALHLMIMRAEIATLGGRMKNVF 182
               ++EG L      IRAS CC+ +  L+ D+  AL +L L  ++AEIAT+GGR+KN+ 
Sbjct: 204 SSYNDEEGNL-----VIRASFCCQDRTDLMHDVINALKSLRLRTLKAEIATVGGRVKNIL 258

Query: 183 VIISCKEQNFEDAEYRQFLAG 203
            +    +   +   YR+   G
Sbjct: 259 FLSREYDDEEDHDSYRRNFDG 279


>AT2G41130.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr2:17143360-17144686 FORWARD
           LENGTH=253
          Length = 253

 Score =  102 bits (254), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 63/175 (36%), Positives = 99/175 (56%), Gaps = 8/175 (4%)

Query: 47  VSPERSIEALRNHSXXXXXXXXXINAHLDTLRTVIPGANKMDKASLLAEVITHLKELKTN 106
           ++ +R++ ALRNH          IN+HL+ LR V+   +K DKA+LLA+V+  ++ELK  
Sbjct: 59  MAQDRALAALRNHKEAERRRRERINSHLNKLRNVLSCNSKTDKATLLAKVVQRVRELKQQ 118

Query: 107 AAQASEG--LMIPKDNDEIRVEEQEGGLNGFPYSIRASLCCEYKPGLLSDIRQALDALHL 164
             + S+    ++P + DEI V       N      +ASLCCE +  LL D+ + L +L++
Sbjct: 119 TLETSDSDQTLLPSETDEISVLHFGDYSNDGHIIFKASLCCEDRSDLLPDLMEILKSLNM 178

Query: 165 MIMRAEIATLGGRMKNVFVIISCKEQNFEDAEYRQFLAGSVHQALRSVLDRFSVS 219
             +RAE+ T+GGR ++V V+ + KE      E   FL      AL+S+L+R S S
Sbjct: 179 KTLRAEMVTIGGRTRSVLVVAADKE--MHGVESVHFL----QNALKSLLERSSKS 227


>AT3G56770.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr3:21029202-21030618 REVERSE
           LENGTH=230
          Length = 230

 Score = 94.7 bits (234), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 97/175 (55%), Gaps = 9/175 (5%)

Query: 47  VSPERSIEALRNHSXXXXXXXXXINAHLDTLRTVIPGANKMDKASLLAEVITHLKELKTN 106
           V  ++++ +LRNH          IN+HL+ LR ++   +K DK++LLA+V+  +KELK  
Sbjct: 37  VYEDKALASLRNHKEAERKRRARINSHLNKLRKLLSCNSKTDKSTLLAKVVQRVKELKQQ 96

Query: 107 AAQASEGLMIPKDNDEIRVEEQEGGLNGFPYSI--RASLCCEYKPGLLSDIRQALDALHL 164
             + ++   IP + DEI V   E    G    I  + S CCE +P LL D+ + L +L +
Sbjct: 97  TLEITDE-TIPSETDEISVLNIEDCSRGDDRRIIFKVSFCCEDRPELLKDLMETLKSLQM 155

Query: 165 MIMRAEIATLGGRMKNVFVIISCKEQNFEDAEYRQFLAGSVHQALRSVLDRFSVS 219
             + A++ T+GGR +NV V+ + KE +    +   FL      AL+S+L+R S S
Sbjct: 156 ETLFADMTTVGGRTRNVLVVAADKEHH--GVQSVNFL----QNALKSLLERSSKS 204


>AT2G40200.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr2:16791098-16792027 FORWARD
           LENGTH=254
          Length = 254

 Score = 94.0 bits (232), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 10/164 (6%)

Query: 57  RNHSXXXXXXXXXINAHLDTLRTVIPGANKMDKASLLAEVITHLKELKTNAAQASEGLMI 116
           R+H          IN+HL  LR ++P ++K+DKA+LLA VI  +KELK  AA++     +
Sbjct: 65  RSHRLAEKRRRDRINSHLTALRKLVPNSDKLDKAALLATVIEQVKELKQKAAESPIFQDL 124

Query: 117 PKDNDEIRVEEQ-----EGGLNGFPYSIRASLCCEYKPGLLSDIRQALDALHLMIMRAEI 171
           P + DE+ V+ +     E   N   +  +AS CCE +P  +S+I + L  L L  ++AEI
Sbjct: 125 PTEADEVTVQPETISDFESNTNTIIF--KASFCCEDQPEAISEIIRVLTKLQLETIQAEI 182

Query: 172 ATLGGRMKNVFVIISCKEQNFEDAEYRQFLAGSVHQALRSVLDR 215
            ++GGRM+  F++   K+ N  +       A ++ Q+L S L+R
Sbjct: 183 ISVGGRMRINFIL---KDSNCNETTNIAASAKALKQSLCSALNR 223


>AT4G38070.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
            superfamily protein | chr4:17876535-17882569 FORWARD
            LENGTH=1513
          Length = 1513

 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 7/130 (5%)

Query: 55   ALRNHSXXXXXXXXXINAHLDTLRTVIPGANKMDKASLLAEVITHLKELKTNAAQASEGL 114
            A + HS         IN+   TLRT++P   K DKAS+L E + +  ELK          
Sbjct: 1349 AAKKHSDAERRRRLRINSQFATLRTILPNLVKQDKASVLGETVRYFNELKKMVQDIP--- 1405

Query: 115  MIPKDNDEIRVEEQEGGLNGFPYSIRASLCCEYKPGLLSDIRQALDALHLMIMRAEIATL 174
              P   D +R++      N      R    C  + GL+S++ +++ A+    +RAEI T+
Sbjct: 1406 TTPSLEDNLRLD----HCNNNRDLARVVFSCSDREGLMSEVAESMKAVKAKAVRAEIMTV 1461

Query: 175  GGRMKNVFVI 184
            GGR K    +
Sbjct: 1462 GGRTKCALFV 1471


>AT5G46760.1 | Symbols:  | Basic helix-loop-helix (bHLH) DNA-binding
           family protein | chr5:18974231-18976009 FORWARD
           LENGTH=592
          Length = 592

 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 1/77 (1%)

Query: 35  LVEAPMQLERK-GVSPERSIEALRNHSXXXXXXXXXINAHLDTLRTVIPGANKMDKASLL 93
           +VE P +  RK G  P    E   NH          +N    +LR V+P  +KMDKASLL
Sbjct: 391 VVEPPEKKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYSLRAVVPNVSKMDKASLL 450

Query: 94  AEVITHLKELKTNAAQA 110
            + I+++ ELK+   QA
Sbjct: 451 GDAISYINELKSKLQQA 467


>AT1G32640.1 | Symbols: ATMYC2, RD22BP1, JAI1, JIN1, MYC2, ZBF1 |
           Basic helix-loop-helix (bHLH) DNA-binding family protein
           | chr1:11799042-11800913 REVERSE LENGTH=623
          Length = 623

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 1/85 (1%)

Query: 43  ERKGVSPERSIEALRNHSXXXXXXXXXINAHLDTLRTVIPGANKMDKASLLAEVITHLKE 102
           +++G  P    E   NH          +N     LR V+P  +KMDKASLL + I ++ E
Sbjct: 437 KKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAIAYINE 496

Query: 103 LKTNAAQA-SEGLMIPKDNDEIRVE 126
           LK+   +  SE L I    +E+++E
Sbjct: 497 LKSKVVKTESEKLQIKNQLEEVKLE 521


>AT4G17880.1 | Symbols:  | Basic helix-loop-helix (bHLH) DNA-binding
           family protein | chr4:9933702-9935471 REVERSE LENGTH=589
          Length = 589

 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 39/76 (51%)

Query: 35  LVEAPMQLERKGVSPERSIEALRNHSXXXXXXXXXINAHLDTLRTVIPGANKMDKASLLA 94
           +VE   +  ++G  P    E   NH          +N    +LR V+P  +KMDKASLL 
Sbjct: 393 VVEPEKKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYSLRAVVPNVSKMDKASLLG 452

Query: 95  EVITHLKELKTNAAQA 110
           + I+++ ELK+   +A
Sbjct: 453 DAISYISELKSKLQKA 468