Miyakogusa Predicted Gene

Lj3g3v2848950.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2848950.1 CUFF.44800.1
         (287 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G58600.1 | Symbols:  | Adaptin ear-binding coat-associated pr...   327   5e-90
AT1G03900.1 | Symbols: ATNAP4, NAP4 | non-intrinsic ABC protein ...   137   6e-33

>AT3G58600.1 | Symbols:  | Adaptin ear-binding coat-associated
           protein 1 NECAP-1 | chr3:21668746-21670999 REVERSE
           LENGTH=302
          Length = 302

 Score =  327 bits (839), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 153/182 (84%), Positives = 164/182 (90%), Gaps = 1/182 (0%)

Query: 21  EPIELVLFQVPECYVYIIPPRKSAASYRADEWDVNKWAWEGILKVVSKGEECIIKLEDKN 80
           E IE+ LFQVPECYVY+IPPRK+AASYRADEWDVNKWAWEG LKVVSKGEECIIKL DK 
Sbjct: 30  EAIEIALFQVPECYVYLIPPRKTAASYRADEWDVNKWAWEGALKVVSKGEECIIKLVDKT 89

Query: 81  TGELYARAFLRNGEPHPVEAVIDSSRYFVLRIEENIGGRLRHAFIGVGFRERTEAYDFQA 140
           TGELYA+AFLR GE HPVEAVIDSSRYFVLR+EE I GR+RHAFIG+GFRERTEAYDFQA
Sbjct: 90  TGELYAQAFLREGELHPVEAVIDSSRYFVLRVEEKIDGRVRHAFIGLGFRERTEAYDFQA 149

Query: 141 ALHDHMKYLNKKKTAEEMEQHYQQSSSVDYSLKEGETLVLQLKNNRSGPNVKSKFFEQGL 200
           ALHDHMKYLNKKKTAEEMEQHYQ +SSVDYSLKEGET+VLQLK NRS  + KSK  E+ L
Sbjct: 150 ALHDHMKYLNKKKTAEEMEQHYQNTSSVDYSLKEGETIVLQLK-NRSDKDSKSKTVEKSL 208

Query: 201 NN 202
            N
Sbjct: 209 GN 210


>AT1G03900.1 | Symbols: ATNAP4, NAP4 | non-intrinsic ABC protein 4 |
           chr1:991252-992852 FORWARD LENGTH=272
          Length = 272

 Score =  137 bits (346), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 74/167 (44%), Positives = 103/167 (61%), Gaps = 9/167 (5%)

Query: 23  IELVLFQVPECYVYIIPPRKSAASYRADEWDVNKWAWEGILKVVSKGEECIIKLEDKNTG 82
            E  L  V E  VY IPPR ++  Y+  EW  +   W G L+VVS  + C I+LED N+G
Sbjct: 12  FEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCKDRCEIRLEDSNSG 71

Query: 83  ELYARAFLRNG-EPHPVEAVIDSSRYFVLRIEENIGGRLRHAFIGVGFRERTEAYDFQAA 141
           +L+A  F+  G   + VE  +DSSRYFVLRI++   GR ++AFIG+GF ER EA+DF  A
Sbjct: 72  DLFAACFVDPGRRENSVEPSLDSSRYFVLRIDD---GRGKYAFIGLGFAERNEAFDFNVA 128

Query: 142 LHDHMKYLNKKKTAE-----EMEQHYQQSSSVDYSLKEGETLVLQLK 183
           L DH KY+ ++K  E     E + H     +V++ LKEGET+ + +K
Sbjct: 129 LSDHEKYVRREKEKETGETSESDNHIDIHPAVNHRLKEGETIRINVK 175