Miyakogusa Predicted Gene

Lj3g3v2848870.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2848870.1 tr|G7JV21|G7JV21_MEDTR Seed biotin-containing
protein SBP65 OS=Medicago truncatula GN=MTR_4g079690
P,60.53,0.000000000000005,LATE EMBRYOGENESIS ABUNDANT
(LEA)-RELATED,NULL; LATE EMBRYOGENESIS ABUNDANT (PLANTS)
LEA-RELATED,NUL,CUFF.44794.1
         (710 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G42560.1 | Symbols:  | late embryogenesis abundant domain-con...    96   1e-19

>AT2G42560.1 | Symbols:  | late embryogenesis abundant
           domain-containing protein / LEA domain-containing
           protein | chr2:17714813-17716821 REVERSE LENGTH=635
          Length = 635

 Score = 95.5 bits (236), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 86/216 (39%), Positives = 114/216 (52%), Gaps = 23/216 (10%)

Query: 233 EELSKYRAQAQQKSNDVISAAQERYERAKQATNEALSSXXXXXXXXXXXXMEKASQAKDT 292
           E+ ++ +  A QK+ +    A E+ +RA +   E  S+             E+A++AKD 
Sbjct: 277 EQAARAKDYALQKAVEAKETAAEKAQRASEYMKETGSTAA-----------EQAARAKDY 325

Query: 293 TLEKGQQGYVATKDTLSSAAKTAAEYTAPVAEKAKGYTAQ----AAEMAKSAGGTTVQFV 348
           TL+K     V  KD  +  A+ A+EY     ++A    AQ    AA M   A   TVQ  
Sbjct: 326 TLQKA----VEAKDVAAEKAQRASEYMTETGKQAGNVAAQKGQEAASMTAKAKDYTVQKA 381

Query: 349 GENAVQAKDVTVETGKTAAEYAGKVAADLKDKATAVGWTAANYSAELTVEGTKAAANVVE 408
           GE A   K+ TVE GK AA YA        +KA AVGWTAA+++ E  V+GTKA A  VE
Sbjct: 382 GEAAGYIKETTVEGGKGAAHYA----GVAAEKAAAVGWTAAHFTTEKVVQGTKAVAGTVE 437

Query: 409 GVAGYAGHKAAELASKSVDTVKGLAAAAGETAKEYT 444
           G  GYAGHKA E+ SK+VD  K  AA A +T   YT
Sbjct: 438 GAVGYAGHKAVEVGSKAVDLTKEKAAVAADTVVGYT 473



 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/39 (66%), Positives = 34/39 (87%), Gaps = 1/39 (2%)

Query: 1  MASEQLSRRENTTSERKIQVEKDRVPKMTTHFEHLSLQG 39
          MASEQ +RREN  +ER++QVEKDRVPKMT+HFE ++ +G
Sbjct: 1  MASEQ-ARRENKVTEREVQVEKDRVPKMTSHFESMAEKG 38