Miyakogusa Predicted Gene

Lj3g3v2838440.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2838440.1 Non Chatacterized Hit- tr|F6H5F6|F6H5F6_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,36.97,0.000000000000003,seg,NULL,CUFF.44761.1
         (195 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G54680.1 | Symbols:  | proteophosphoglycan-related | chr3:202...    54   7e-08

>AT3G54680.1 | Symbols:  | proteophosphoglycan-related |
           chr3:20244568-20245689 FORWARD LENGTH=211
          Length = 211

 Score = 53.9 bits (128), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 75/210 (35%), Gaps = 55/210 (26%)

Query: 4   NNKYASINFNHIYEKSIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKPHGRILV 63
           NNKY SINFNHI  K                                     + +GR+LV
Sbjct: 6   NNKYTSINFNHILHKD-------------------PPSSSSSSSSASYSSVARSNGRMLV 46

Query: 64  LXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHPRPEPGSDAISLRPLGRTGSGPSLA 123
           L                                +    +P    ISLRPLG TGS  SL+
Sbjct: 47  LTKSSPKPLRSPSAAPTTTTTAPPISTAPRIPSNQAISDPDPSQISLRPLGHTGSSSSLS 106

Query: 124 VP------NQEKDRELPSPRQ-PLKPNKFVPPHLRPGYVPK-EDPGR------------- 162
            P      N+  +   P+P     KP++FVPPHLRPG+V K E PG              
Sbjct: 107 FPIRTPEINKAPEVNAPTPVSLSPKPDRFVPPHLRPGFVRKDEKPGLNSSRVRDPNPNLN 166

Query: 163 ---------------FGENGRPKSGGLERM 177
                          +G+ GRPKSGG ER+
Sbjct: 167 QRLPNQEQPRQEYFGYGQPGRPKSGGYERI 196